RNA–Protein interactions for RNA: ENST00000370225.3

ABCA4-201, Transcript of ATP binding cassette subfamily A member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ABCA4, Length 7,309 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4-201ENST00000370225 CARMIL1Q5VZK9 1371 aa10.96□□□□□ -0.66
ABCA4-201ENST00000370225 CHMP3Q9Y3E7 222 aa10.95□□□□□ -0.66
ABCA4-201ENST00000370225 B4GALNT3Q6L9W6 998 aa10.95□□□□□ -0.66
ABCA4-201ENST00000370225 PKD2Q13563 968 aa10.95□□□□□ -0.66
ABCA4-201ENST00000370225 GNL2Q13823 731 aaKnown RBP10.93□□□□□ -0.66
ABCA4-201ENST00000370225 LTV1Q96GA3 475 aaPredicted RBP10.93□□□□□ -0.66
ABCA4-201ENST00000370225 GOLGA6L4A6NEF3 574 aa10.92□□□□□ -0.66
ABCA4-201ENST00000370225 TMX4Q9H1E5 349 aaPredicted RBP10.92□□□□□ -0.66
ABCA4-201ENST00000370225 CHMP4BQ9H444 224 aaKnown RBP10.92□□□□□ -0.66
ABCA4-201ENST00000370225 TNIKQ9UKE5 1360 aa10.92□□□□□ -0.66
ABCA4-201ENST00000370225 CECR2Q9BXF3 1484 aa10.92□□□□□ -0.66
ABCA4-201ENST00000370225 U2AF1L5P0DN76 240 aaPredicted RBP10.91□□□□□ -0.66
ABCA4-201ENST00000370225 MS4A1P11836 297 aa10.91□□□□□ -0.66
ABCA4-201ENST00000370225 U2AF1Q01081 240 aaKnown RBP eCLIP10.91□□□□□ -0.66
ABCA4-201ENST00000370225 ANP32EQ9BTT0 268 aa10.91□□□□□ -0.66
ABCA4-201ENST00000370225 RTN4Q9NQC3 1192 aaKnown RBP10.91□□□□□ -0.66
ABCA4-201ENST00000370225 ROCK2O75116 1388 aaKnown RBP10.9□□□□□ -0.66
ABCA4-201ENST00000370225 FHAD1B1AJZ9 1412 aa10.9□□□□□ -0.66
ABCA4-201ENST00000370225 G3V3G9 751 aa10.9□□□□□ -0.66
ABCA4-201ENST00000370225 DCAF8Q5TAQ9 597 aa10.9□□□□□ -0.66
ABCA4-201ENST00000370225 KIF3BO15066 747 aa10.89□□□□□ -0.67
ABCA4-201ENST00000370225 HNRNPMP52272 730 aaKnown RBP eCLIP10.89□□□□□ -0.67
ABCA4-201ENST00000370225 GOLGA6L6A8MZA4 724 aa10.89□□□□□ -0.67
ABCA4-201ENST00000370225 HSPA5P11021 654 aaKnown RBP10.89□□□□□ -0.67
ABCA4-201ENST00000370225 SOGA1O94964 1423 aa10.89□□□□□ -0.67
ABCA4-201ENST00000370225 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.89□□□□□ -0.67
ABCA4-201ENST00000370225 ITPRIPQ8IWB1 547 aa10.88□□□□□ -0.67
ABCA4-201ENST00000370225 MCCP23508 829 aa10.88□□□□□ -0.67
ABCA4-201ENST00000370225 HSCBQ8IWL3 235 aa10.88□□□□□ -0.67
ABCA4-201ENST00000370225 NGDNQ8NEJ9 315 aaKnown RBP10.88□□□□□ -0.67
ABCA4-201ENST00000370225 TDRD9Q8NDG6 1382 aaKnown RBP10.88□□□□□ -0.67
ABCA4-201ENST00000370225 ARHGAP35Q9NRY4 1499 aa10.88□□□□□ -0.67
ABCA4-201ENST00000370225 TAF7LQ5H9L4 462 aa10.88□□□□□ -0.67
ABCA4-201ENST00000370225 GORABQ5T7V8 394 aa10.88□□□□□ -0.67
ABCA4-201ENST00000370225 PPP4R2Q9NY27 417 aa10.88□□□□□ -0.67
ABCA4-201ENST00000370225 CARMIL2Q6F5E8 1435 aa10.88□□□□□ -0.67
ABCA4-201ENST00000370225 EID1Q9Y6B2 187 aa10.87□□□□□ -0.67
ABCA4-201ENST00000370225 DRC7Q8IY82 874 aa10.87□□□□□ -0.67
ABCA4-201ENST00000370225 ABCC8Q09428 1581 aa10.87□□□□□ -0.67
ABCA4-201ENST00000370225 BAZ1AQ9NRL2 1556 aaPredicted RBP10.86□□□□□ -0.67
ABCA4-201ENST00000370225 NAP1L5Q96NT1 182 aaPredicted RBP10.86□□□□□ -0.67
ABCA4-201ENST00000370225 NUP155O75694 1391 aa10.86□□□□□ -0.67
ABCA4-201ENST00000370225 ERICH6BQ5W0A0 696 aa10.85□□□□□ -0.67
ABCA4-201ENST00000370225 KIAA1211Q6ZU35 1233 aa10.85□□□□□ -0.67
ABCA4-201ENST00000370225 SLC4A10Q6U841 1118 aa10.85□□□□□ -0.67
ABCA4-201ENST00000370225 CCDC146Q8IYE0 955 aa10.85□□□□□ -0.67
ABCA4-201ENST00000370225 WASHC2CQ9Y4E1 1318 aa10.85□□□□□ -0.67
ABCA4-201ENST00000370225 KTN1Q86UP2 1357 aaKnown RBP10.85□□□□□ -0.67
ABCA4-201ENST00000370225 MSH5O43196 834 aa10.85□□□□□ -0.67
ABCA4-201ENST00000370225 ANO8Q9HCE9 1232 aaPredicted RBP10.84□□□□□ -0.67
ABCA4-201ENST00000370225 PDE4CQ08493 712 aa10.84□□□□□ -0.67
ABCA4-201ENST00000370225 KANK4Q5T7N3 995 aaPredicted RBP10.84□□□□□ -0.67
ABCA4-201ENST00000370225 EFCAB2Q5VUJ9 269 aa10.84□□□□□ -0.67
ABCA4-201ENST00000370225 AMPHP49418 695 aa10.84□□□□□ -0.67
ABCA4-201ENST00000370225 AEBP2Q6ZN18 517 aaPredicted RBP10.82□□□□□ -0.68
ABCA4-201ENST00000370225 SPAG9O60271 1321 aaKnown RBP10.82□□□□□ -0.68
ABCA4-201ENST00000370225 GTF2E1P29083 439 aaPredicted RBP10.82□□□□□ -0.68
ABCA4-201ENST00000370225 FRAT2O75474 233 aaPredicted RBP10.82□□□□□ -0.68
ABCA4-201ENST00000370225 HSP90B1P14625 803 aaKnown RBP10.82□□□□□ -0.68
ABCA4-201ENST00000370225 SETD5Q9C0A6 1442 aa10.82□□□□□ -0.68
ABCA4-201ENST00000370225 TRIM6-TRIM34B2RNG4 842 aa10.81□□□□□ -0.68
ABCA4-201ENST00000370225 MPHOSPH9Q99550 1183 aa10.81□□□□□ -0.68
ABCA4-201ENST00000370225 NOP58Q9Y2X3 529 aaKnown RBP10.81□□□□□ -0.68
ABCA4-201ENST00000370225 STK31Q9BXU1 1019 aa10.81□□□□□ -0.68
ABCA4-201ENST00000370225 IPO8O15397 1037 aaKnown RBP10.81□□□□□ -0.68
ABCA4-201ENST00000370225 NOL8Q76FK4 1167 aaKnown RBP10.81□□□□□ -0.68
ABCA4-201ENST00000370225 CYB5RLQ6IPT4 315 aa10.81□□□□□ -0.68
ABCA4-201ENST00000370225 EVA1CP58658 441 aa10.8□□□□□ -0.68
ABCA4-201ENST00000370225 TRAK1Q9UPV9 953 aa10.8□□□□□ -0.68
ABCA4-201ENST00000370225 PDS5BQ9NTI5 1447 aa10.8□□□□□ -0.68
ABCA4-201ENST00000370225 PRM3Q9NNZ6 103 aa10.8□□□□□ -0.68
ABCA4-201ENST00000370225 MEX3CQ5U5Q3 659 aaKnown RBP10.79□□□□□ -0.68
ABCA4-201ENST00000370225 NRDCO43847 1150 aa10.79□□□□□ -0.68
ABCA4-201ENST00000370225 VPS53Q5VIR6 699 aa10.79□□□□□ -0.68
ABCA4-201ENST00000370225 TOMM22Q9NS69 142 aa10.79□□□□□ -0.68
ABCA4-201ENST00000370225 SMC4Q9NTJ3 1288 aa10.79□□□□□ -0.68
ABCA4-201ENST00000370225 NGEFQ8N5V2 710 aa10.78□□□□□ -0.68
ABCA4-201ENST00000370225 CLUAP1Q96AJ1 413 aa10.78□□□□□ -0.68
ABCA4-201ENST00000370225 CREBRFQ8IUR6 639 aa10.78□□□□□ -0.68
ABCA4-201ENST00000370225 CALD1Q05682 793 aaKnown RBP10.78□□□□□ -0.68
ABCA4-201ENST00000370225 TERF2IPQ9NYB0 399 aa10.77□□□□□ -0.68
ABCA4-201ENST00000370225 ANKRD30AQ9BXX3 1397 aa10.77□□□□□ -0.69
ABCA4-201ENST00000370225 KLHL34Q8N239 644 aa10.77□□□□□ -0.69
ABCA4-201ENST00000370225 RRP7AQ9Y3A4 280 aaKnown RBP10.77□□□□□ -0.69
ABCA4-201ENST00000370225 EIF3AQ14152 1382 aaKnown RBP10.77□□□□□ -0.69
ABCA4-201ENST00000370225 FOXD4L1Q9NU39 408 aa10.77□□□□□ -0.69
ABCA4-201ENST00000370225 CCDC88BA6NC98 1476 aa10.76□□□□□ -0.69
ABCA4-201ENST00000370225 GZF1Q9H116 711 aaPredicted RBP10.76□□□□□ -0.69
ABCA4-201ENST00000370225 SYTL4Q96C24 671 aaPredicted RBP10.76□□□□□ -0.69
ABCA4-201ENST00000370225 MFAP1P55081 439 aaKnown RBP10.75□□□□□ -0.69
ABCA4-201ENST00000370225 GPATCH3Q96I76 525 aa10.75□□□□□ -0.69
ABCA4-201ENST00000370225 RASSF8Q8NHQ8 419 aa10.75□□□□□ -0.69
ABCA4-201ENST00000370225 RCAN3Q9UKA8 241 aa10.74□□□□□ -0.69
ABCA4-201ENST00000370225 RAD21O60216 631 aa10.74□□□□□ -0.69
ABCA4-201ENST00000370225 KIAA2012Q0VF49 1180 aa10.74□□□□□ -0.69
ABCA4-201ENST00000370225 ELL2O00472 640 aaPredicted RBP10.74□□□□□ -0.69
ABCA4-201ENST00000370225 SLKQ9H2G2 1235 aaPredicted RBP10.74□□□□□ -0.69
ABCA4-201ENST00000370225 PHF23Q9BUL5 403 aaPredicted RBP10.74□□□□□ -0.69
ABCA4-201ENST00000370225 FHOD3Q2V2M9 1422 aa10.73□□□□□ -0.69
ABCA4-201ENST00000370225 CHAF1AQ13111 956 aaPredicted RBP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms