RNA–Protein interactions for RNA: ENST00000368213.9

PTPRK-205, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,816 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-205ENST00000368213 FOXD1Q16676 465 aa14.07□□□□□ -0.16
PTPRK-205ENST00000368213 GOLGA2Q08379 1002 aa14.06□□□□□ -0.16
PTPRK-205ENST00000368213 SENP3-EIF4A1A0A087X0R7 540 aa14.06□□□□□ -0.16
PTPRK-205ENST00000368213 VPS8Q8N3P4 1428 aa14.06□□□□□ -0.16
PTPRK-205ENST00000368213 FTSJ3Q8IY81 847 aaKnown RBP14.06□□□□□ -0.16
PTPRK-205ENST00000368213 RTF1Q92541 710 aaKnown RBP14.05□□□□□ -0.16
PTPRK-205ENST00000368213 KANK4Q5T7N3 995 aaPredicted RBP14.05□□□□□ -0.16
PTPRK-205ENST00000368213 MEX3CQ5U5Q3 659 aaKnown RBP14.04□□□□□ -0.16
PTPRK-205ENST00000368213 NUTM2FA1L443 756 aa14.03□□□□□ -0.16
PTPRK-205ENST00000368213 AQRO60306 1485 aaKnown RBP eCLIP14.03□□□□□ -0.169e-8■■■■■ 30.5
PTPRK-205ENST00000368213 ZNF330Q9Y3S2 320 aaPredicted RBP14.03□□□□□ -0.16
PTPRK-205ENST00000368213 FGD5Q6ZNL6 1462 aa14.03□□□□□ -0.16
PTPRK-205ENST00000368213 RAD54L2Q9Y4B4 1467 aa14.02□□□□□ -0.16
PTPRK-205ENST00000368213 OS9Q13438 667 aaPredicted RBP14.02□□□□□ -0.16
PTPRK-205ENST00000368213 NCAPD3P42695 1498 aa14.02□□□□□ -0.17
PTPRK-205ENST00000368213 SETD5Q9C0A6 1442 aa14.01□□□□□ -0.17
PTPRK-205ENST00000368213 TMX4Q9H1E5 349 aaPredicted RBP14□□□□□ -0.17
PTPRK-205ENST00000368213 MPHOSPH9Q99550 1183 aa14□□□□□ -0.17
PTPRK-205ENST00000368213 ROCK2O75116 1388 aaKnown RBP13.99□□□□□ -0.17
PTPRK-205ENST00000368213 EIF3AQ14152 1382 aaKnown RBP13.98□□□□□ -0.17
PTPRK-205ENST00000368213 CC2D2AQ9P2K1 1620 aa13.97□□□□□ -0.17
PTPRK-205ENST00000368213 TERF2IPQ9NYB0 399 aa13.96□□□□□ -0.17
PTPRK-205ENST00000368213 MRC2Q9UBG0 1479 aa13.96□□□□□ -0.17
PTPRK-205ENST00000368213 EVA1CP58658 441 aa13.95□□□□□ -0.18
PTPRK-205ENST00000368213 FRAT1Q92837 279 aaPredicted RBP13.94□□□□□ -0.18
PTPRK-205ENST00000368213 ANP32BQ92688 251 aaKnown RBP13.94□□□□□ -0.18
PTPRK-205ENST00000368213 AMPHP49418 695 aa13.93□□□□□ -0.18
PTPRK-205ENST00000368213 CASC1Q6TDU7 716 aa13.93□□□□□ -0.18
PTPRK-205ENST00000368213 PHF23Q9BUL5 403 aaPredicted RBP13.93□□□□□ -0.18
PTPRK-205ENST00000368213 CHMP4BQ9H444 224 aaKnown RBP13.93□□□□□ -0.18
PTPRK-205ENST00000368213 LTV1Q96GA3 475 aaPredicted RBP13.92□□□□□ -0.18
PTPRK-205ENST00000368213 IRX6P78412 446 aaPredicted RBP13.92□□□□□ -0.18
PTPRK-205ENST00000368213 GRIN2BQ13224 1484 aa13.92□□□□□ -0.18
PTPRK-205ENST00000368213 VGFO15240 615 aaPredicted RBP13.92□□□□□ -0.18
PTPRK-205ENST00000368213 CDK11BP21127 795 aaKnown RBP13.92□□□□□ -0.18
PTPRK-205ENST00000368213 TRAK1Q9UPV9 953 aa13.91□□□□□ -0.18
PTPRK-205ENST00000368213 NESP48681 1621 aa13.91□□□□□ -0.18
PTPRK-205ENST00000368213 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.89□□□□□ -0.191e-6■■■□□ 16.3
PTPRK-205ENST00000368213 MS4A1P11836 297 aa13.88□□□□□ -0.19
PTPRK-205ENST00000368213 ATF3P18847 181 aa13.88□□□□□ -0.19
PTPRK-205ENST00000368213 U2AF1L5P0DN76 240 aaPredicted RBP13.88□□□□□ -0.19
PTPRK-205ENST00000368213 U2AF1Q01081 240 aaKnown RBP eCLIP13.88□□□□□ -0.19
PTPRK-205ENST00000368213 TULP1O00294 542 aaPredicted RBP13.88□□□□□ -0.19
PTPRK-205ENST00000368213 PRG4Q92954 1404 aaPredicted RBP13.88□□□□□ -0.19
PTPRK-205ENST00000368213 MIER1Q8N108 512 aa13.88□□□□□ -0.19
PTPRK-205ENST00000368213 IFT140Q96RY7 1462 aa13.87□□□□□ -0.19
PTPRK-205ENST00000368213 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.87□□□□□ -0.19
PTPRK-205ENST00000368213 UACAQ9BZF9 1416 aa13.87□□□□□ -0.19
PTPRK-205ENST00000368213 MSH5O43196 834 aa13.87□□□□□ -0.19
PTPRK-205ENST00000368213 TIMELESSQ9UNS1 1208 aa13.87□□□□□ -0.19
PTPRK-205ENST00000368213 HSPA5P11021 654 aaKnown RBP13.86□□□□□ -0.19
PTPRK-205ENST00000368213 IGF1RP08069 1367 aa13.86□□□□□ -0.19
PTPRK-205ENST00000368213 TAOK2Q9UL54 1235 aa13.86□□□□□ -0.19
PTPRK-205ENST00000368213 ISY1Q9ULR0 285 aaKnown RBP13.86□□□□□ -0.19
PTPRK-205ENST00000368213 DNAJC5BQ9UF47 199 aa13.85□□□□□ -0.19
PTPRK-205ENST00000368213 G3V3G9 751 aa13.85□□□□□ -0.19
PTPRK-205ENST00000368213 DCAF8Q5TAQ9 597 aa13.85□□□□□ -0.19
PTPRK-205ENST00000368213 CCDC144AA2RUR9 1427 aa13.85□□□□□ -0.19
PTPRK-205ENST00000368213 CALD1Q05682 793 aaKnown RBP13.84□□□□□ -0.19
PTPRK-205ENST00000368213 KTN1Q86UP2 1357 aaKnown RBP13.84□□□□□ -0.19
PTPRK-205ENST00000368213 PRDM2Q13029 1718 aa13.84□□□□□ -0.19
PTPRK-205ENST00000368213 RAB3GAP2Q9H2M9 1393 aa13.84□□□□□ -0.19
PTPRK-205ENST00000368213 PSME1Q06323 249 aa13.84□□□□□ -0.19
PTPRK-205ENST00000368213 GTF2E1P29083 439 aaPredicted RBP13.83□□□□□ -0.2
PTPRK-205ENST00000368213 CHMP4AQ9BY43 222 aa13.83□□□□□ -0.2
PTPRK-205ENST00000368213 KCNJ4P48050 445 aa13.82□□□□□ -0.2
PTPRK-205ENST00000368213 FGD1P98174 961 aa13.82□□□□□ -0.2
PTPRK-205ENST00000368213 EIF5BO60841 1220 aaKnown RBP13.81□□□□□ -0.2
PTPRK-205ENST00000368213 MINK1Q8N4C8 1332 aaPredicted RBP13.8□□□□□ -0.2
PTPRK-205ENST00000368213 NAP1L2Q9ULW6 460 aaPredicted RBP13.79□□□□□ -0.2
PTPRK-205ENST00000368213 TAF7LQ5H9L4 462 aa13.79□□□□□ -0.2
PTPRK-205ENST00000368213 COG3Q96JB2 828 aa13.79□□□□□ -0.2
PTPRK-205ENST00000368213 STK31Q9BXU1 1019 aa13.78□□□□□ -0.2
PTPRK-205ENST00000368213 RUSC2Q8N2Y8 1516 aa13.78□□□□□ -0.2
PTPRK-205ENST00000368213 NCLP19338 710 aaKnown RBP13.78□□□□□ -0.2
PTPRK-205ENST00000368213 CHMP3Q9Y3E7 222 aa13.78□□□□□ -0.2
PTPRK-205ENST00000368213 SYNJ2O15056 1496 aa13.78□□□□□ -0.2
PTPRK-205ENST00000368213 EVC2Q86UK5 1308 aa13.77□□□□□ -0.21
PTPRK-205ENST00000368213 C1orf141Q5JVX7 400 aa13.76□□□□□ -0.21
PTPRK-205ENST00000368213 L3MBTL2Q969R5 705 aa13.76□□□□□ -0.21
PTPRK-205ENST00000368213 ARHGAP5Q13017 1502 aa13.76□□□□□ -0.21
PTPRK-205ENST00000368213 CFTRP13569 1480 aa13.76□□□□□ -0.21
PTPRK-205ENST00000368213 SYTL4Q96C24 671 aaPredicted RBP13.75□□□□□ -0.21
PTPRK-205ENST00000368213 SNAPC4Q5SXM2 1469 aa13.75□□□□□ -0.21
PTPRK-205ENST00000368213 PROSER2Q86WR7 435 aaPredicted RBP13.75□□□□□ -0.21
PTPRK-205ENST00000368213 DCAF8L1A6NGE4 600 aa13.74□□□□□ -0.21
PTPRK-205ENST00000368213 AFAP1Q8N556 730 aa13.74□□□□□ -0.21
PTPRK-205ENST00000368213 ZRSR1Q15695 479 aaKnown RBP13.74□□□□□ -0.21
PTPRK-205ENST00000368213 KLHL34Q8N239 644 aa13.74□□□□□ -0.21
PTPRK-205ENST00000368213 BECN1Q14457 450 aa13.74□□□□□ -0.21
PTPRK-205ENST00000368213 GORABQ5T7V8 394 aa13.74□□□□□ -0.21
PTPRK-205ENST00000368213 IPO8O15397 1037 aaKnown RBP13.73□□□□□ -0.21
PTPRK-205ENST00000368213 TXNDC2Q86VQ3 553 aa13.73□□□□□ -0.21
PTPRK-205ENST00000368213 MYOM3Q5VTT5 1437 aa13.72□□□□□ -0.21
PTPRK-205ENST00000368213 POGZQ7Z3K3 1410 aa13.72□□□□□ -0.21
PTPRK-205ENST00000368213 LMOD3Q0VAK6 560 aa13.72□□□□□ -0.21
PTPRK-205ENST00000368213 KIF15Q9NS87 1388 aa13.71□□□□□ -0.21
PTPRK-205ENST00000368213 THEMISQ8N1K5 641 aaPredicted RBP13.71□□□□□ -0.21
PTPRK-205ENST00000368213 RALBP1Q15311 655 aa13.71□□□□□ -0.22
PTPRK-205ENST00000368213 HMGXB3Q12766 1538 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms