RNA–Protein interactions for RNA: ENST00000367279.8

PTPN7-202, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN7, Length 3,265 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-202ENST00000367279 KDM5BQ9UGL1 1544 aa17.01■□□□□ 0.31
PTPN7-202ENST00000367279 TCOF1Q13428 1488 aaKnown RBP17■□□□□ 0.31
PTPN7-202ENST00000367279 DENND4BO75064 1496 aaPredicted RBP17■□□□□ 0.31
PTPN7-202ENST00000367279 ARHGEF11O15085 1522 aa17■□□□□ 0.31
PTPN7-202ENST00000367279 SENP3-EIF4A1A0A087X0R7 540 aa17■□□□□ 0.31
PTPN7-202ENST00000367279 CFDP1Q9UEE9 299 aaPredicted RBP16.99■□□□□ 0.31
PTPN7-202ENST00000367279 MIA2Q96PC5 1412 aa16.98■□□□□ 0.31
PTPN7-202ENST00000367279 ZNF608Q9ULD9 1512 aaPredicted RBP16.98■□□□□ 0.31
PTPN7-202ENST00000367279 GCC2Q8IWJ2 1684 aa16.98■□□□□ 0.31
PTPN7-202ENST00000367279 DAPK1P53355 1430 aa16.96■□□□□ 0.31
PTPN7-202ENST00000367279 CNTLNQ9NXG0 1405 aa16.96■□□□□ 0.31
PTPN7-202ENST00000367279 ADAMTS12P58397 1594 aa16.96■□□□□ 0.31
PTPN7-202ENST00000367279 PRKRIP1Q9H875 184 aaPredicted RBP16.96■□□□□ 0.31
PTPN7-202ENST00000367279 WDR62O43379 1518 aa16.96■□□□□ 0.31
PTPN7-202ENST00000367279 CCDC7Q96M83 1385 aa16.96■□□□□ 0.3
PTPN7-202ENST00000367279 CHMP7Q8WUX9 453 aaPredicted RBP16.95■□□□□ 0.3
PTPN7-202ENST00000367279 MRC2Q9UBG0 1479 aa16.93■□□□□ 0.3
PTPN7-202ENST00000367279 ABCC5O15440 1437 aa16.93■□□□□ 0.3
PTPN7-202ENST00000367279 ANKRD30BQ9BXX2 1392 aa16.92■□□□□ 0.3
PTPN7-202ENST00000367279 AKNAQ7Z591 1439 aa16.92■□□□□ 0.3
PTPN7-202ENST00000367279 KIF7Q2M1P5 1343 aa16.91■□□□□ 0.3
PTPN7-202ENST00000367279 PRG4Q92954 1404 aaPredicted RBP16.91■□□□□ 0.3
PTPN7-202ENST00000367279 PKD2Q13563 968 aa16.89■□□□□ 0.29
PTPN7-202ENST00000367279 KDM2AQ9Y2K7 1162 aa16.88■□□□□ 0.29
PTPN7-202ENST00000367279 NUP153P49790 1475 aaKnown RBP16.88■□□□□ 0.29
PTPN7-202ENST00000367279 RPRD2Q5VT52 1461 aaKnown RBP16.87■□□□□ 0.29
PTPN7-202ENST00000367279 NCOA1Q15788 1441 aa16.87■□□□□ 0.29
PTPN7-202ENST00000367279 B4GALNT3Q6L9W6 998 aa16.87■□□□□ 0.29
PTPN7-202ENST00000367279 KIAA0586Q9BVV6 1533 aa16.86■□□□□ 0.29
PTPN7-202ENST00000367279 ROCK1Q13464 1354 aa16.86■□□□□ 0.29
PTPN7-202ENST00000367279 ERICH6Q7L0X2 663 aa16.85■□□□□ 0.29
PTPN7-202ENST00000367279 DISP1Q96F81 1524 aa16.85■□□□□ 0.29
PTPN7-202ENST00000367279 KIAA0556O60303 1618 aa16.85■□□□□ 0.29
PTPN7-202ENST00000367279 IFT140Q96RY7 1462 aa16.84■□□□□ 0.29
PTPN7-202ENST00000367279 PLB1Q6P1J6 1458 aa16.83■□□□□ 0.29
PTPN7-202ENST00000367279 PPP4R2Q9NY27 417 aa16.83■□□□□ 0.28
PTPN7-202ENST00000367279 DNMT1P26358 1616 aaKnown RBP16.82■□□□□ 0.28
PTPN7-202ENST00000367279 RAPGEF6Q8TEU7 1601 aa16.82■□□□□ 0.28
PTPN7-202ENST00000367279 CAMSAP2Q08AD1 1489 aa16.81■□□□□ 0.28
PTPN7-202ENST00000367279 TEX14Q8IWB6 1497 aa16.81■□□□□ 0.28
PTPN7-202ENST00000367279 GRIN2AQ12879 1464 aa16.81■□□□□ 0.28
PTPN7-202ENST00000367279 PLEKHD1A6NEE1 506 aa16.81■□□□□ 0.28
PTPN7-202ENST00000367279 ERCC6Q03468 1493 aa16.8■□□□□ 0.28
PTPN7-202ENST00000367279 TROQ12816 1431 aaPredicted RBP16.8■□□□□ 0.28
PTPN7-202ENST00000367279 USP47Q96K76 1375 aa16.8■□□□□ 0.28
PTPN7-202ENST00000367279 ZBED9Q6R2W3 1325 aa16.79■□□□□ 0.28
PTPN7-202ENST00000367279 JPH4Q96JJ6 628 aa16.79■□□□□ 0.28
PTPN7-202ENST00000367279 CARD11Q9BXL7 1154 aa16.79■□□□□ 0.28
PTPN7-202ENST00000367279 NUP155O75694 1391 aa16.78■□□□□ 0.28
PTPN7-202ENST00000367279 ANKRD30AQ9BXX3 1397 aa16.78■□□□□ 0.28
PTPN7-202ENST00000367279 TSPY4P0CV99 314 aa16.78■□□□□ 0.28
PTPN7-202ENST00000367279 TSPY10P0CW01 314 aa16.78■□□□□ 0.28
PTPN7-202ENST00000367279 PZPP20742 1482 aa16.77■□□□□ 0.27
PTPN7-202ENST00000367279 TMC1Q8TDI8 760 aa16.76■□□□□ 0.27
PTPN7-202ENST00000367279 MSH5O43196 834 aa16.76■□□□□ 0.27
PTPN7-202ENST00000367279 HNRNPMP52272 730 aaKnown RBP eCLIP16.75■□□□□ 0.27
PTPN7-202ENST00000367279 GPATCH8Q9UKJ3 1502 aaKnown RBP16.75■□□□□ 0.27
PTPN7-202ENST00000367279 KIAA1107Q9UPP5 1409 aa16.75■□□□□ 0.27
PTPN7-202ENST00000367279 DCAF11Q8TEB1 546 aa16.74■□□□□ 0.27
PTPN7-202ENST00000367279 SALL2Q9Y467 1007 aaPredicted RBP16.74■□□□□ 0.27
PTPN7-202ENST00000367279 EIF4G3O43432 1585 aaKnown RBP16.74■□□□□ 0.27
PTPN7-202ENST00000367279 KIF14Q15058 1648 aa16.74■□□□□ 0.27
PTPN7-202ENST00000367279 CARMIL2Q6F5E8 1435 aa16.73■□□□□ 0.27
PTPN7-202ENST00000367279 SPATA31E1Q6ZUB1 1445 aa16.73■□□□□ 0.27
PTPN7-202ENST00000367279 ANKRD50Q9ULJ7 1429 aa16.73■□□□□ 0.27
PTPN7-202ENST00000367279 RGL3Q3MIN7 710 aa16.71■□□□□ 0.27
PTPN7-202ENST00000367279 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.71■□□□□ 0.27
PTPN7-202ENST00000367279 ST20-MTHFSA0A0A6YYL1 179 aa16.7■□□□□ 0.26
PTPN7-202ENST00000367279 ERICH6BQ5W0A0 696 aa16.7■□□□□ 0.26
PTPN7-202ENST00000367279 ITSN2Q9NZM3 1697 aa16.68■□□□□ 0.26
PTPN7-202ENST00000367279 CCDC136Q96JN2 1154 aa16.67■□□□□ 0.26
PTPN7-202ENST00000367279 CEP170Q5SW79 1584 aa16.67■□□□□ 0.26
PTPN7-202ENST00000367279 DHX29Q7Z478 1369 aaKnown RBP16.66■□□□□ 0.26
PTPN7-202ENST00000367279 C9orf84Q5VXU9 1444 aa16.66■□□□□ 0.26
PTPN7-202ENST00000367279 NUDCQ9Y266 331 aa16.65■□□□□ 0.26
PTPN7-202ENST00000367279 SYNJ2O15056 1496 aa16.65■□□□□ 0.26
PTPN7-202ENST00000367279 ADGBQ8N7X0 1667 aa16.64■□□□□ 0.25
PTPN7-202ENST00000367279 BCORL1Q5H9F3 1711 aa16.64■□□□□ 0.25
PTPN7-202ENST00000367279 FANCIQ9NVI1 1328 aa16.64■□□□□ 0.25
PTPN7-202ENST00000367279 KIF15Q9NS87 1388 aa16.63■□□□□ 0.25
PTPN7-202ENST00000367279 MAGI1Q96QZ7 1491 aaPredicted RBP16.63■□□□□ 0.25
PTPN7-202ENST00000367279 ROCK2O75116 1388 aaKnown RBP16.62■□□□□ 0.25
PTPN7-202ENST00000367279 PNISRQ8TF01 805 aaKnown RBP16.6■□□□□ 0.25
PTPN7-202ENST00000367279 ADGRL2O95490 1459 aa16.59■□□□□ 0.25
PTPN7-202ENST00000367279 MBD5Q9P267 1494 aa16.59■□□□□ 0.25
PTPN7-202ENST00000367279 ATP10BO94823 1461 aa16.59■□□□□ 0.25
PTPN7-202ENST00000367279 POLR1AO95602 1720 aaPredicted RBP16.58■□□□□ 0.25
PTPN7-202ENST00000367279 SMG6Q86US8 1419 aaKnown RBP16.58■□□□□ 0.24
PTPN7-202ENST00000367279 KDM5CP41229 1560 aa16.56■□□□□ 0.24
PTPN7-202ENST00000367279 CROCC2H7BZ55 1655 aa16.56■□□□□ 0.24
PTPN7-202ENST00000367279 NBPF1Q3BBV0 1214 aa16.56■□□□□ 0.24
PTPN7-202ENST00000367279 CC2D1BQ5T0F9 858 aaKnown RBP16.56■□□□□ 0.24
PTPN7-202ENST00000367279 ARID4BQ4LE39 1312 aaPredicted RBP16.55■□□□□ 0.24
PTPN7-202ENST00000367279 CDC42BPAQ5VT25 1732 aa16.55■□□□□ 0.24
PTPN7-202ENST00000367279 MYBBP1AQ9BQG0 1328 aaKnown RBP16.54■□□□□ 0.24
PTPN7-202ENST00000367279 PTPRGP23470 1445 aa16.54■□□□□ 0.24
PTPN7-202ENST00000367279 RALGAPBQ86X10 1494 aa16.54■□□□□ 0.24
PTPN7-202ENST00000367279 ADCY10Q96PN6 1610 aa16.53■□□□□ 0.24
PTPN7-202ENST00000367279 RALBP1Q15311 655 aa16.52■□□□□ 0.23
PTPN7-202ENST00000367279 CCDC144AA2RUR9 1427 aa16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms