RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SCAPERQ9BY12 1400 aa23.14■■□□□ 1.29
VPS29-201ENST00000360579 HECW1Q76N89 1606 aa23.13■■□□□ 1.29
VPS29-201ENST00000360579 CDK13Q14004 1512 aaKnown RBP23.12■■□□□ 1.29
VPS29-201ENST00000360579 MLECQ14165 292 aa23.11■■□□□ 1.29
VPS29-201ENST00000360579 EFCAB2Q5VUJ9 269 aa23.09■■□□□ 1.29
VPS29-201ENST00000360579 SIGLEC1Q9BZZ2 1709 aa23.08■■□□□ 1.29
VPS29-201ENST00000360579 CDK11AQ9UQ88 783 aaPredicted RBP23.08■■□□□ 1.29
VPS29-201ENST00000360579 ATP10AO60312 1499 aa23.08■■□□□ 1.29
VPS29-201ENST00000360579 FER1L4A9Z1Z3 1794 aa23.07■■□□□ 1.28
VPS29-201ENST00000360579 C9orf84Q5VXU9 1444 aa23.07■■□□□ 1.28
VPS29-201ENST00000360579 FMN1Q68DA7 1419 aa23.07■■□□□ 1.28
VPS29-201ENST00000360579 CERKQ8TCT0 537 aa23.06■■□□□ 1.28
VPS29-201ENST00000360579 ARHGEF12Q9NZN5 1544 aa23.05■■□□□ 1.28
VPS29-201ENST00000360579 ATP1B4Q9UN42 357 aaPredicted RBP23.03■■□□□ 1.28
VPS29-201ENST00000360579 ZNF518AQ6AHZ1 1483 aa23.01■■□□□ 1.27
VPS29-201ENST00000360579 MYO5CQ9NQX4 1742 aa23■■□□□ 1.27
VPS29-201ENST00000360579 UBTFP17480 764 aaKnown RBP22.99■■□□□ 1.27
VPS29-201ENST00000360579 DMRT2Q9Y5R5 561 aa22.98■■□□□ 1.27
VPS29-201ENST00000360579 PREX1Q8TCU6 1659 aa22.97■■□□□ 1.27
VPS29-201ENST00000360579 KIF14Q15058 1648 aa22.97■■□□□ 1.27
VPS29-201ENST00000360579 CLIP1P30622 1438 aa22.96■■□□□ 1.27
VPS29-201ENST00000360579 TROQ12816 1431 aaPredicted RBP22.95■■□□□ 1.26
VPS29-201ENST00000360579 ARHGAP5Q13017 1502 aa22.94■■□□□ 1.26
VPS29-201ENST00000360579 KDM5CP41229 1560 aa22.93■■□□□ 1.26
VPS29-201ENST00000360579 ARHGAP35Q9NRY4 1499 aa22.93■■□□□ 1.26
VPS29-201ENST00000360579 CEBPAP49715 358 aaPredicted RBP22.93■■□□□ 1.26
VPS29-201ENST00000360579 UHRF1BP1Q6BDS2 1440 aa22.92■■□□□ 1.26
VPS29-201ENST00000360579 AFAP1Q8N556 730 aa22.92■■□□□ 1.26
VPS29-201ENST00000360579 MYT1LQ9UL68 1186 aa22.92■■□□□ 1.26
VPS29-201ENST00000360579 PPP6R1Q9UPN7 881 aa22.92■■□□□ 1.26
VPS29-201ENST00000360579 REREQ9P2R6 1566 aa22.89■■□□□ 1.25
VPS29-201ENST00000360579 MLH3Q9UHC1 1453 aa22.87■■□□□ 1.25
VPS29-201ENST00000360579 EHMT2Q96KQ7 1210 aa22.87■■□□□ 1.25
VPS29-201ENST00000360579 DIP2CQ9Y2E4 1556 aa22.86■■□□□ 1.25
VPS29-201ENST00000360579 ESF1Q9H501 851 aaKnown RBP22.86■■□□□ 1.25
VPS29-201ENST00000360579 SETD1BQ9UPS6 1966 aaKnown RBP22.84■■□□□ 1.25
VPS29-201ENST00000360579 ADRA2BP18089 450 aa22.84■■□□□ 1.25
VPS29-201ENST00000360579 AGLP35573 1532 aa22.82■■□□□ 1.24
VPS29-201ENST00000360579 STRCQ7RTU9 1775 aa22.81■■□□□ 1.24
VPS29-201ENST00000360579 PTPRTO14522 1441 aa22.81■■□□□ 1.24
VPS29-201ENST00000360579 ABCA6Q8N139 1617 aa22.79■■□□□ 1.24
VPS29-201ENST00000360579 CCDC18Q5T9S5 1454 aa22.79■■□□□ 1.24
VPS29-201ENST00000360579 ABCC1P33527 1531 aa22.78■■□□□ 1.24
VPS29-201ENST00000360579 TRAPPC8Q9Y2L5 1435 aa22.78■■□□□ 1.24
VPS29-201ENST00000360579 CDC42BPBQ9Y5S2 1711 aa22.77■■□□□ 1.24
VPS29-201ENST00000360579 CNTLNQ9NXG0 1405 aa22.77■■□□□ 1.24
VPS29-201ENST00000360579 PREX2Q70Z35 1606 aa22.77■■□□□ 1.24
VPS29-201ENST00000360579 DISP3Q9P2K9 1392 aa22.76■■□□□ 1.23
VPS29-201ENST00000360579 CASKIN1Q8WXD9 1431 aa22.75■■□□□ 1.23
VPS29-201ENST00000360579 C3P01024 1663 aa22.75■■□□□ 1.23
VPS29-201ENST00000360579 LRRIQ1Q96JM4 1722 aa22.74■■□□□ 1.23
VPS29-201ENST00000360579 PIAS4Q8N2W9 510 aaPredicted RBP22.73■■□□□ 1.23
VPS29-201ENST00000360579 ITSN2Q9NZM3 1697 aa22.72■■□□□ 1.23
VPS29-201ENST00000360579 IQSEC2Q5JU85 1478 aa22.68■■□□□ 1.22
VPS29-201ENST00000360579 NPATQ14207 1427 aa22.68■■□□□ 1.22
VPS29-201ENST00000360579 NCOA1Q15788 1441 aa22.68■■□□□ 1.22
VPS29-201ENST00000360579 KIDINS220Q9ULH0 1771 aa22.68■■□□□ 1.22
VPS29-201ENST00000360579 LTBP4Q8N2S1 1624 aa22.65■■□□□ 1.22
VPS29-201ENST00000360579 SOCS7O14512 581 aa22.65■■□□□ 1.22
VPS29-201ENST00000360579 ILDR2Q71H61 639 aa22.64■■□□□ 1.21
VPS29-201ENST00000360579 ZNF777Q9ULD5 760 aaPredicted RBP22.64■■□□□ 1.21
VPS29-201ENST00000360579 FYCO1Q9BQS8 1478 aa22.64■■□□□ 1.21
VPS29-201ENST00000360579 SAMD9LQ8IVG5 1584 aa22.63■■□□□ 1.21
VPS29-201ENST00000360579 SPAG9O60271 1321 aaKnown RBP22.63■■□□□ 1.21
VPS29-201ENST00000360579 CDC42BPAQ5VT25 1732 aa22.63■■□□□ 1.21
VPS29-201ENST00000360579 MSH5O43196 834 aa22.63■■□□□ 1.21
VPS29-201ENST00000360579 MROH2AA6NES4 1674 aa22.62■■□□□ 1.21
VPS29-201ENST00000360579 ZMYM3Q14202 1370 aa22.62■■□□□ 1.21
VPS29-201ENST00000360579 CAMSAP1Q5T5Y3 1602 aa22.6■■□□□ 1.21
VPS29-201ENST00000360579 SYCP2Q9BX26 1530 aa22.59■■□□□ 1.21
VPS29-201ENST00000360579 GPATCH8Q9UKJ3 1502 aaKnown RBP22.59■■□□□ 1.21
VPS29-201ENST00000360579 SPATA31D1Q6ZQQ2 1576 aa22.59■■□□□ 1.21
VPS29-201ENST00000360579 KIAA1107Q9UPP5 1409 aa22.58■■□□□ 1.21
VPS29-201ENST00000360579 PLEKHH2Q8IVE3 1493 aa22.58■■□□□ 1.2
VPS29-201ENST00000360579 HNRNPMP52272 730 aaKnown RBP eCLIP22.56■■□□□ 1.2
VPS29-201ENST00000360579 ATP7AQ04656 1500 aa22.56■■□□□ 1.2
VPS29-201ENST00000360579 CFDP1Q9UEE9 299 aaPredicted RBP22.55■■□□□ 1.2
VPS29-201ENST00000360579 PKD2Q13563 968 aa22.54■■□□□ 1.2
VPS29-201ENST00000360579 A2MP01023 1474 aa22.54■■□□□ 1.2
VPS29-201ENST00000360579 PLXNC1O60486 1568 aa22.53■■□□□ 1.2
VPS29-201ENST00000360579 PLA2R1Q13018 1463 aa22.53■■□□□ 1.2
VPS29-201ENST00000360579 POTEDQ86YR6 584 aa22.52■■□□□ 1.2
VPS29-201ENST00000360579 NCKAP5LQ9HCH0 1330 aa22.52■■□□□ 1.2
VPS29-201ENST00000360579 CCNB3Q8WWL7 1395 aa22.51■■□□□ 1.19
VPS29-201ENST00000360579 SUPT6HQ7KZ85 1726 aaKnown RBP22.51■■□□□ 1.19
VPS29-201ENST00000360579 INO80Q9ULG1 1556 aaPredicted RBP22.5■■□□□ 1.19
VPS29-201ENST00000360579 PTPRKQ15262 1439 aa22.49■■□□□ 1.19
VPS29-201ENST00000360579 GGT6Q6P531 493 aa22.49■■□□□ 1.19
VPS29-201ENST00000360579 ZNF335Q9H4Z2 1342 aaPredicted RBP22.49■■□□□ 1.19
VPS29-201ENST00000360579 ZNF142P52746 1687 aaPredicted RBP22.49■■□□□ 1.19
VPS29-201ENST00000360579 CLTCQ00610 1675 aaKnown RBP22.49■■□□□ 1.19
VPS29-201ENST00000360579 MYO3AQ8NEV4 1616 aa22.48■■□□□ 1.19
VPS29-201ENST00000360579 CEP170BQ9Y4F5 1589 aaPredicted RBP22.47■■□□□ 1.19
VPS29-201ENST00000360579 UBAP1LF5GYI3 381 aa22.47■■□□□ 1.19
VPS29-201ENST00000360579 TCOF1Q13428 1488 aaKnown RBP22.47■■□□□ 1.19
VPS29-201ENST00000360579 MTUS2Q5JR59 1369 aa22.46■■□□□ 1.19
VPS29-201ENST00000360579 ADGBQ8N7X0 1667 aa22.42■■□□□ 1.18
VPS29-201ENST00000360579 A2ML1A8K2U0 1454 aa22.4■■□□□ 1.18
VPS29-201ENST00000360579 RTEL1-TNFRSF6BF6WH68 1400 aa22.4■■□□□ 1.18
VPS29-201ENST00000360579 MBD5Q9P267 1494 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms