RNA–Protein interactions for RNA: ENST00000360413.7

SRGAP3-201, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best) BASIC

Gene SRGAP3, Length 8,415 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-201ENST00000360413 CEP89Q96ST8 783 aa16.6■□□□□ 0.25
SRGAP3-201ENST00000360413 CSPP1Q1MSJ5 1256 aa16.58■□□□□ 0.25
SRGAP3-201ENST00000360413 CALD1Q05682 793 aaKnown RBP16.58■□□□□ 0.24
SRGAP3-201ENST00000360413 APPP05067 770 aa16.57■□□□□ 0.24
SRGAP3-201ENST00000360413 PKNOX2Q96KN3 472 aa16.56■□□□□ 0.24
SRGAP3-201ENST00000360413 KANK1Q14678 1352 aa16.55■□□□□ 0.24
SRGAP3-201ENST00000360413 SCRIBQ14160 1630 aa16.55■□□□□ 0.24
SRGAP3-201ENST00000360413 TCERG1O14776 1098 aaKnown RBP16.55■□□□□ 0.24
SRGAP3-201ENST00000360413 GPATCH3Q96I76 525 aa16.55■□□□□ 0.24
SRGAP3-201ENST00000360413 ANO8Q9HCE9 1232 aaPredicted RBP16.54■□□□□ 0.24
SRGAP3-201ENST00000360413 POGKQ9P215 609 aa16.54■□□□□ 0.24
SRGAP3-201ENST00000360413 CHMP4CQ96CF2 233 aa16.54■□□□□ 0.24
SRGAP3-201ENST00000360413 ISY1Q9ULR0 285 aaKnown RBP16.54■□□□□ 0.24
SRGAP3-201ENST00000360413 PHF14O94880 888 aa16.53■□□□□ 0.24
SRGAP3-201ENST00000360413 PLEKHD1A6NEE1 506 aa16.53■□□□□ 0.24
SRGAP3-201ENST00000360413 KRI1Q8N9T8 703 aaKnown RBP16.52■□□□□ 0.24
SRGAP3-201ENST00000360413 GSE1Q14687 1217 aa16.52■□□□□ 0.23
SRGAP3-201ENST00000360413 KIF3AQ9Y496 699 aa16.5■□□□□ 0.23
SRGAP3-201ENST00000360413 PATL2C9JE40 543 aaKnown RBP16.5■□□□□ 0.23
SRGAP3-201ENST00000360413 PODXL2Q9NZ53 605 aa16.5■□□□□ 0.23
SRGAP3-201ENST00000360413 IPO8O15397 1037 aaKnown RBP16.5■□□□□ 0.23
SRGAP3-201ENST00000360413 FAM13BQ9NYF5 915 aa16.49■□□□□ 0.23
SRGAP3-201ENST00000360413 PLEKHG5O94827 1062 aa16.49■□□□□ 0.23
SRGAP3-201ENST00000360413 EEA1Q15075 1411 aa16.48■□□□□ 0.23
SRGAP3-201ENST00000360413 GPS2Q13227 327 aa16.48■□□□□ 0.23
SRGAP3-201ENST00000360413 TEX35Q5T0J7 233 aa16.47■□□□□ 0.23
SRGAP3-201ENST00000360413 RTF1Q92541 710 aaKnown RBP16.47■□□□□ 0.23
SRGAP3-201ENST00000360413 CC2D1BQ5T0F9 858 aaKnown RBP16.46■□□□□ 0.23
SRGAP3-201ENST00000360413 DDX11L8A8MPP1 907 aa16.46■□□□□ 0.23
SRGAP3-201ENST00000360413 RRP7BPQ9NSQ0 103 aa16.46■□□□□ 0.23
SRGAP3-201ENST00000360413 LMOD2Q6P5Q4 547 aa16.46■□□□□ 0.23
SRGAP3-201ENST00000360413 CCDC70Q6NSX1 233 aa16.45■□□□□ 0.22
SRGAP3-201ENST00000360413 CARD11Q9BXL7 1154 aa16.45■□□□□ 0.22
SRGAP3-201ENST00000360413 TPM3P06753 285 aa16.45■□□□□ 0.22
SRGAP3-201ENST00000360413 NOM1Q5C9Z4 860 aaKnown RBP16.44■□□□□ 0.22
SRGAP3-201ENST00000360413 SENP3Q9H4L4 574 aaPredicted RBP16.43■□□□□ 0.22
SRGAP3-201ENST00000360413 CCER2I3L3R5 266 aa16.43■□□□□ 0.22
SRGAP3-201ENST00000360413 PDE4CQ08493 712 aa16.43■□□□□ 0.22
SRGAP3-201ENST00000360413 TSR1Q2NL82 804 aaKnown RBP16.42■□□□□ 0.22
SRGAP3-201ENST00000360413 CCAR2Q8N163 923 aaKnown RBP16.42■□□□□ 0.22
SRGAP3-201ENST00000360413 MFAP1P55081 439 aaKnown RBP16.42■□□□□ 0.22
SRGAP3-201ENST00000360413 RGL3Q3MIN7 710 aa16.4■□□□□ 0.22
SRGAP3-201ENST00000360413 CLIP1P30622 1438 aa16.4■□□□□ 0.22
SRGAP3-201ENST00000360413 KAT6BQ8WYB5 2073 aa16.4■□□□□ 0.22
SRGAP3-201ENST00000360413 HSP90B1P14625 803 aaKnown RBP16.4■□□□□ 0.22
SRGAP3-201ENST00000360413 FOXD4L1Q9NU39 408 aa16.39■□□□□ 0.21
SRGAP3-201ENST00000360413 TPM2P07951 284 aa16.38■□□□□ 0.21
SRGAP3-201ENST00000360413 RCAN3Q9UKA8 241 aa16.38■□□□□ 0.21
SRGAP3-201ENST00000360413 U2SURPO15042 1029 aaKnown RBP16.37■□□□□ 0.21
SRGAP3-201ENST00000360413 APBB1O00213 710 aa16.37■□□□□ 0.21
SRGAP3-201ENST00000360413 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.37■□□□□ 0.21
SRGAP3-201ENST00000360413 CREBRFQ8IUR6 639 aa16.37■□□□□ 0.21
SRGAP3-201ENST00000360413 ZNF592Q92610 1267 aa16.37■□□□□ 0.21
SRGAP3-201ENST00000360413 RWDD1Q9H446 243 aaPredicted RBP16.37■□□□□ 0.21
SRGAP3-201ENST00000360413 SPAG9O60271 1321 aaKnown RBP16.36■□□□□ 0.21
SRGAP3-201ENST00000360413 TPM1P09493 284 aa16.36■□□□□ 0.21
SRGAP3-201ENST00000360413 RASSF8Q8NHQ8 419 aa16.36■□□□□ 0.21
SRGAP3-201ENST00000360413 TMF1P82094 1093 aa16.36■□□□□ 0.21
SRGAP3-201ENST00000360413 RRP12Q5JTH9 1297 aaKnown RBP16.35■□□□□ 0.21
SRGAP3-201ENST00000360413 G3V3G9 751 aa16.34■□□□□ 0.21
SRGAP3-201ENST00000360413 TAF7LQ5H9L4 462 aa16.34■□□□□ 0.21
SRGAP3-201ENST00000360413 DCAF8Q5TAQ9 597 aa16.34■□□□□ 0.21
SRGAP3-201ENST00000360413 CFDP1Q9UEE9 299 aaPredicted RBP16.34■□□□□ 0.21
SRGAP3-201ENST00000360413 SKOR2Q2VWA4 1001 aaPredicted RBP16.34■□□□□ 0.21
SRGAP3-201ENST00000360413 GOLGA3Q08378 1498 aa16.34■□□□□ 0.21
SRGAP3-201ENST00000360413 LRRFIP1Q32MZ4 808 aaKnown RBP16.34■□□□□ 0.21
SRGAP3-201ENST00000360413 GORABQ5T7V8 394 aa16.33■□□□□ 0.2
SRGAP3-201ENST00000360413 PRKCSHP14314 528 aaPredicted RBP16.33■□□□□ 0.2
SRGAP3-201ENST00000360413 FAM43AQ8N2R8 423 aa16.33■□□□□ 0.2
SRGAP3-201ENST00000360413 RB1CC1Q8TDY2 1594 aa16.33■□□□□ 0.2
SRGAP3-201ENST00000360413 HMMRO75330 724 aa16.32■□□□□ 0.2
SRGAP3-201ENST00000360413 PMFBP1Q8TBY8 1022 aa16.32■□□□□ 0.2
SRGAP3-201ENST00000360413 DDX49Q9Y6V7 483 aaKnown RBP16.32■□□□□ 0.2
SRGAP3-201ENST00000360413 MYO15BQ96JP2 1530 aa16.32■□□□□ 0.2
SRGAP3-201ENST00000360413 EIF3AQ14152 1382 aaKnown RBP16.32■□□□□ 0.2
SRGAP3-201ENST00000360413 GOLGA6L19H0YKK7 550 aa16.32■□□□□ 0.2
SRGAP3-201ENST00000360413 ZCCHC6Q5VYS8 1495 aaKnown RBP16.31■□□□□ 0.2
SRGAP3-201ENST00000360413 ITPRIPQ8IWB1 547 aa16.3■□□□□ 0.2
SRGAP3-201ENST00000360413 FHAD1B1AJZ9 1412 aa16.3■□□□□ 0.2
SRGAP3-201ENST00000360413 FOXD4L5Q5VV16 416 aaPredicted RBP16.3■□□□□ 0.2
SRGAP3-201ENST00000360413 FOXD4L4Q8WXT5 416 aaPredicted RBP16.3■□□□□ 0.2
SRGAP3-201ENST00000360413 TCEAL9Q9UHQ7 104 aa16.3■□□□□ 0.2
SRGAP3-201ENST00000360413 MTERF4Q7Z6M4 381 aaKnown RBP16.3■□□□□ 0.2
SRGAP3-201ENST00000360413 KIF16BQ96L93 1317 aa16.3■□□□□ 0.2
SRGAP3-201ENST00000360413 ST18O60284 1047 aa16.29■□□□□ 0.2
SRGAP3-201ENST00000360413 KCNH8Q96L42 1107 aa16.29■□□□□ 0.2
SRGAP3-201ENST00000360413 ATP6V1DQ9Y5K8 247 aa16.28■□□□□ 0.2
SRGAP3-201ENST00000360413 MAP7D2Q96T17 732 aa16.28■□□□□ 0.2
SRGAP3-201ENST00000360413 NOL8Q76FK4 1167 aaKnown RBP16.28■□□□□ 0.2
SRGAP3-201ENST00000360413 SIN3AQ96ST3 1273 aa16.28■□□□□ 0.2
SRGAP3-201ENST00000360413 CWC15Q9P013 229 aaKnown RBP16.27■□□□□ 0.2
SRGAP3-201ENST00000360413 CCDC66A2RUB6 948 aa16.27■□□□□ 0.2
SRGAP3-201ENST00000360413 HDGFL2Q7Z4V5 671 aaPredicted RBP16.27■□□□□ 0.19
SRGAP3-201ENST00000360413 CDR1P51861 262 aa16.25■□□□□ 0.19
SRGAP3-201ENST00000360413 PES1O00541 588 aaKnown RBP16.25■□□□□ 0.19
SRGAP3-201ENST00000360413 IPO7O95373 1038 aaKnown RBP16.25■□□□□ 0.19
SRGAP3-201ENST00000360413 RDXP35241 583 aaKnown RBP16.25■□□□□ 0.19
SRGAP3-201ENST00000360413 SLC4A3P48751 1232 aa16.25■□□□□ 0.19
SRGAP3-201ENST00000360413 FANCIQ9NVI1 1328 aa16.25■□□□□ 0.19
SRGAP3-201ENST00000360413 TRIM6-TRIM34B2RNG4 842 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms