RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PKD2Q13563 968 aa19.97■□□□□ 0.79
PTPRF-201ENST00000359947 SPRYD3Q8NCJ5 442 aa19.96■□□□□ 0.79
PTPRF-201ENST00000359947 CHMP3Q9Y3E7 222 aa19.96■□□□□ 0.79
PTPRF-201ENST00000359947 CHMP4BQ9H444 224 aaKnown RBP19.95■□□□□ 0.78
PTPRF-201ENST00000359947 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.94■□□□□ 0.78
PTPRF-201ENST00000359947 LTV1Q96GA3 475 aaPredicted RBP19.93■□□□□ 0.78
PTPRF-201ENST00000359947 CECR2Q9BXF3 1484 aa19.93■□□□□ 0.78
PTPRF-201ENST00000359947 KIF3BO15066 747 aa19.92■□□□□ 0.78
PTPRF-201ENST00000359947 MS4A1P11836 297 aa19.92■□□□□ 0.78
PTPRF-201ENST00000359947 FHAD1B1AJZ9 1412 aa19.91■□□□□ 0.78
PTPRF-201ENST00000359947 EID1Q9Y6B2 187 aa19.91■□□□□ 0.78
PTPRF-201ENST00000359947 TNIKQ9UKE5 1360 aa19.91■□□□□ 0.78
PTPRF-201ENST00000359947 G3V3G9 751 aa19.9■□□□□ 0.78
PTPRF-201ENST00000359947 U2AF1L5P0DN76 240 aaPredicted RBP19.9■□□□□ 0.78
PTPRF-201ENST00000359947 U2AF1Q01081 240 aaKnown RBP eCLIP19.9■□□□□ 0.78
PTPRF-201ENST00000359947 DCAF8Q5TAQ9 597 aa19.9■□□□□ 0.78
PTPRF-201ENST00000359947 GOLGA6L4A6NEF3 574 aa19.9■□□□□ 0.78
PTPRF-201ENST00000359947 GNL2Q13823 731 aaKnown RBP19.9■□□□□ 0.78
PTPRF-201ENST00000359947 NGDNQ8NEJ9 315 aaKnown RBP19.89■□□□□ 0.78
PTPRF-201ENST00000359947 CARMIL2Q6F5E8 1435 aa19.89■□□□□ 0.77
PTPRF-201ENST00000359947 TDRD9Q8NDG6 1382 aaKnown RBP19.89■□□□□ 0.77
PTPRF-201ENST00000359947 B4GALNT3Q6L9W6 998 aa19.88■□□□□ 0.77
PTPRF-201ENST00000359947 HNRNPMP52272 730 aaKnown RBP eCLIP19.88■□□□□ 0.771e-6■■■■□ 19.7
PTPRF-201ENST00000359947 ANP32EQ9BTT0 268 aa19.88■□□□□ 0.77
PTPRF-201ENST00000359947 AEBP2Q6ZN18 517 aaPredicted RBP19.88■□□□□ 0.77
PTPRF-201ENST00000359947 EFCAB2Q5VUJ9 269 aa19.86■□□□□ 0.77
PTPRF-201ENST00000359947 TAF7LQ5H9L4 462 aa19.85■□□□□ 0.77
PTPRF-201ENST00000359947 GORABQ5T7V8 394 aa19.85■□□□□ 0.77
PTPRF-201ENST00000359947 ROCK2O75116 1388 aaKnown RBP19.84■□□□□ 0.77
PTPRF-201ENST00000359947 WASHC2CQ9Y4E1 1318 aa19.84■□□□□ 0.77
PTPRF-201ENST00000359947 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.84■□□□□ 0.771e-6■□□□□ 9.3
PTPRF-201ENST00000359947 CYB5RLQ6IPT4 315 aa19.82■□□□□ 0.76
PTPRF-201ENST00000359947 MCCP23508 829 aa19.82■□□□□ 0.76
PTPRF-201ENST00000359947 BAZ1AQ9NRL2 1556 aaPredicted RBP19.82■□□□□ 0.76
PTPRF-201ENST00000359947 SOGA1O94964 1423 aa19.82■□□□□ 0.76
PTPRF-201ENST00000359947 NUP155O75694 1391 aa19.82■□□□□ 0.76
PTPRF-201ENST00000359947 MSH5O43196 834 aa19.81■□□□□ 0.76
PTPRF-201ENST00000359947 HSPA5P11021 654 aaKnown RBP19.81■□□□□ 0.76
PTPRF-201ENST00000359947 GOLGA6L6A8MZA4 724 aa19.81■□□□□ 0.76
PTPRF-201ENST00000359947 GTF2E1P29083 439 aaPredicted RBP19.8■□□□□ 0.76
PTPRF-201ENST00000359947 ITPRIPQ8IWB1 547 aa19.8■□□□□ 0.76
PTPRF-201ENST00000359947 ARHGAP35Q9NRY4 1499 aa19.8■□□□□ 0.76
PTPRF-201ENST00000359947 AMPHP49418 695 aa19.79■□□□□ 0.76
PTPRF-201ENST00000359947 KIAA1211Q6ZU35 1233 aa19.79■□□□□ 0.76
PTPRF-201ENST00000359947 HSCBQ8IWL3 235 aa19.78■□□□□ 0.76
PTPRF-201ENST00000359947 PDS5BQ9NTI5 1447 aa19.78■□□□□ 0.76
PTPRF-201ENST00000359947 SLC4A10Q6U841 1118 aa19.77■□□□□ 0.76
PTPRF-201ENST00000359947 PPP4R2Q9NY27 417 aa19.77■□□□□ 0.76
PTPRF-201ENST00000359947 SPAG9O60271 1321 aaKnown RBP19.76■□□□□ 0.75
PTPRF-201ENST00000359947 FRAT2O75474 233 aaPredicted RBP19.75■□□□□ 0.75
PTPRF-201ENST00000359947 EVA1CP58658 441 aa19.75■□□□□ 0.75
PTPRF-201ENST00000359947 KTN1Q86UP2 1357 aaKnown RBP19.75■□□□□ 0.75
PTPRF-201ENST00000359947 DRC7Q8IY82 874 aa19.74■□□□□ 0.75
PTPRF-201ENST00000359947 KANK4Q5T7N3 995 aaPredicted RBP19.74■□□□□ 0.75
PTPRF-201ENST00000359947 STK31Q9BXU1 1019 aa19.73■□□□□ 0.75
PTPRF-201ENST00000359947 IPO8O15397 1037 aaKnown RBP19.73■□□□□ 0.75
PTPRF-201ENST00000359947 ABCC8Q09428 1581 aa19.72■□□□□ 0.75
PTPRF-201ENST00000359947 CCDC146Q8IYE0 955 aa19.72■□□□□ 0.75
PTPRF-201ENST00000359947 MPHOSPH9Q99550 1183 aa19.72■□□□□ 0.75
PTPRF-201ENST00000359947 MEX3CQ5U5Q3 659 aaKnown RBP19.72■□□□□ 0.75
PTPRF-201ENST00000359947 TRAK1Q9UPV9 953 aa19.72■□□□□ 0.75
PTPRF-201ENST00000359947 ERICH6BQ5W0A0 696 aa19.7■□□□□ 0.74
PTPRF-201ENST00000359947 RTN4Q9NQC3 1192 aaKnown RBP19.7■□□□□ 0.74
PTPRF-201ENST00000359947 TRIM6-TRIM34B2RNG4 842 aa19.69■□□□□ 0.74
PTPRF-201ENST00000359947 SETD5Q9C0A6 1442 aa19.69■□□□□ 0.74
PTPRF-201ENST00000359947 TERF2IPQ9NYB0 399 aa19.69■□□□□ 0.74
PTPRF-201ENST00000359947 CALD1Q05682 793 aaKnown RBP19.69■□□□□ 0.74
PTPRF-201ENST00000359947 NRDCO43847 1150 aa19.68■□□□□ 0.74
PTPRF-201ENST00000359947 PDE4CQ08493 712 aa19.68■□□□□ 0.74
PTPRF-201ENST00000359947 ANO8Q9HCE9 1232 aaPredicted RBP19.67■□□□□ 0.74
PTPRF-201ENST00000359947 ANKRD30AQ9BXX3 1397 aa19.66■□□□□ 0.74
PTPRF-201ENST00000359947 NAP1L5Q96NT1 182 aaPredicted RBP19.66■□□□□ 0.74
PTPRF-201ENST00000359947 KLHL34Q8N239 644 aa19.66■□□□□ 0.74
PTPRF-201ENST00000359947 TOMM22Q9NS69 142 aa19.66■□□□□ 0.74
PTPRF-201ENST00000359947 NGEFQ8N5V2 710 aa19.66■□□□□ 0.74
PTPRF-201ENST00000359947 HSP90B1P14625 803 aaKnown RBP19.65■□□□□ 0.74
PTPRF-201ENST00000359947 PRM3Q9NNZ6 103 aa19.65■□□□□ 0.74
PTPRF-201ENST00000359947 VPS53Q5VIR6 699 aa19.65■□□□□ 0.74
PTPRF-201ENST00000359947 PHF23Q9BUL5 403 aaPredicted RBP19.65■□□□□ 0.74
PTPRF-201ENST00000359947 SYTL4Q96C24 671 aaPredicted RBP19.64■□□□□ 0.74
PTPRF-201ENST00000359947 SMC4Q9NTJ3 1288 aa19.64■□□□□ 0.74
PTPRF-201ENST00000359947 CLUAP1Q96AJ1 413 aa19.63■□□□□ 0.73
PTPRF-201ENST00000359947 NOL8Q76FK4 1167 aaKnown RBP19.62■□□□□ 0.73
PTPRF-201ENST00000359947 EIF3AQ14152 1382 aaKnown RBP19.62■□□□□ 0.73
PTPRF-201ENST00000359947 JPH4Q96JJ6 628 aa19.61■□□□□ 0.73
PTPRF-201ENST00000359947 GPATCH3Q96I76 525 aa19.6■□□□□ 0.73
PTPRF-201ENST00000359947 CCDC88BA6NC98 1476 aa19.6■□□□□ 0.73
PTPRF-201ENST00000359947 CREBRFQ8IUR6 639 aa19.6■□□□□ 0.73
PTPRF-201ENST00000359947 NOP58Q9Y2X3 529 aaKnown RBP19.6■□□□□ 0.73
PTPRF-201ENST00000359947 RRP7AQ9Y3A4 280 aaKnown RBP19.59■□□□□ 0.73
PTPRF-201ENST00000359947 RASSF8Q8NHQ8 419 aa19.58■□□□□ 0.73
PTPRF-201ENST00000359947 ELL2O00472 640 aaPredicted RBP19.57■□□□□ 0.72
PTPRF-201ENST00000359947 RAD21O60216 631 aa19.57■□□□□ 0.72
PTPRF-201ENST00000359947 RCAN3Q9UKA8 241 aa19.56■□□□□ 0.72
PTPRF-201ENST00000359947 C1orf141Q5JVX7 400 aa19.55■□□□□ 0.72
PTPRF-201ENST00000359947 KIAA2012Q0VF49 1180 aa19.55■□□□□ 0.72
PTPRF-201ENST00000359947 RWDD1Q9H446 243 aaPredicted RBP19.55■□□□□ 0.72
PTPRF-201ENST00000359947 FHOD3Q2V2M9 1422 aa19.54■□□□□ 0.72
PTPRF-201ENST00000359947 FMN1Q68DA7 1419 aa19.54■□□□□ 0.72
PTPRF-201ENST00000359947 MFAP1P55081 439 aaKnown RBP19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms