RNA–Protein interactions for RNA: ENST00000356660.8

BDNF-202, Transcript of brain derived neurotrophic factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BDNF, Length 4,018 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BDNF-202ENST00000356660 CC2D1BQ5T0F9 858 aaKnown RBP16.48■□□□□ 0.23
BDNF-202ENST00000356660 UBE2Q2Q8WVN8 375 aa16.48■□□□□ 0.23
BDNF-202ENST00000356660 FGD6Q6ZV73 1430 aa16.47■□□□□ 0.23
BDNF-202ENST00000356660 TOP2BQ02880 1626 aa16.47■□□□□ 0.23
BDNF-202ENST00000356660 TIAM1Q13009 1591 aa16.46■□□□□ 0.23
BDNF-202ENST00000356660 NBPF8Q3BBV2 869 aa16.44■□□□□ 0.22
BDNF-202ENST00000356660 BRPF3Q9ULD4 1205 aa16.44■□□□□ 0.22
BDNF-202ENST00000356660 PLEKHG5O94827 1062 aa16.43■□□□□ 0.22
BDNF-202ENST00000356660 RRP1P56182 461 aaKnown RBP16.43■□□□□ 0.22
BDNF-202ENST00000356660 NPM1P06748 294 aaKnown RBP eCLIP16.42■□□□□ 0.22
BDNF-202ENST00000356660 STAG3Q9UJ98 1225 aa16.42■□□□□ 0.22
BDNF-202ENST00000356660 WDR43Q15061 677 aaKnown RBP eCLIP16.42■□□□□ 0.22
BDNF-202ENST00000356660 SKAP1Q86WV1 359 aa16.41■□□□□ 0.22
BDNF-202ENST00000356660 DCAF11Q8TEB1 546 aa16.4■□□□□ 0.22
BDNF-202ENST00000356660 TDRD9Q8NDG6 1382 aaKnown RBP16.4■□□□□ 0.22
BDNF-202ENST00000356660 PKD2Q13563 968 aa16.4■□□□□ 0.22
BDNF-202ENST00000356660 GSE1Q14687 1217 aa16.39■□□□□ 0.21
BDNF-202ENST00000356660 USP35Q9P2H5 1018 aa16.39■□□□□ 0.21
BDNF-202ENST00000356660 CUX1P39880 1505 aa16.39■□□□□ 0.21
BDNF-202ENST00000356660 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.38■□□□□ 0.21
BDNF-202ENST00000356660 A0A0U1RQG5 324 aaPredicted RBP16.37■□□□□ 0.21
BDNF-202ENST00000356660 CRBNQ96SW2 442 aa16.35■□□□□ 0.21
BDNF-202ENST00000356660 ST20-MTHFSA0A0A6YYL1 179 aa16.35■□□□□ 0.21
BDNF-202ENST00000356660 CDCA7LQ96GN5 454 aa16.34■□□□□ 0.21
BDNF-202ENST00000356660 SLKQ9H2G2 1235 aaPredicted RBP16.34■□□□□ 0.21
BDNF-202ENST00000356660 UPF2Q9HAU5 1272 aaKnown RBP16.34■□□□□ 0.21
BDNF-202ENST00000356660 NFKBIBQ15653 356 aa16.33■□□□□ 0.2
BDNF-202ENST00000356660 HFM1A2PYH4 1435 aa16.33■□□□□ 0.2
BDNF-202ENST00000356660 USP47Q96K76 1375 aa16.33■□□□□ 0.2
BDNF-202ENST00000356660 NAIPQ13075 1403 aa16.32■□□□□ 0.2
BDNF-202ENST00000356660 VSIG10Q8N0Z9 540 aa16.31■□□□□ 0.2
BDNF-202ENST00000356660 SPRYD3Q8NCJ5 442 aa16.31■□□□□ 0.2
BDNF-202ENST00000356660 ESF1Q9H501 851 aaKnown RBP16.31■□□□□ 0.2
BDNF-202ENST00000356660 PNISRQ8TF01 805 aaKnown RBP16.3■□□□□ 0.2
BDNF-202ENST00000356660 BACH2Q9BYV9 841 aa16.3■□□□□ 0.2
BDNF-202ENST00000356660 MYOM3Q5VTT5 1437 aa16.3■□□□□ 0.2
BDNF-202ENST00000356660 SMG6Q86US8 1419 aaKnown RBP16.3■□□□□ 0.2
BDNF-202ENST00000356660 FRAT1Q92837 279 aaPredicted RBP16.3■□□□□ 0.2
BDNF-202ENST00000356660 FGD5Q6ZNL6 1462 aa16.3■□□□□ 0.2
BDNF-202ENST00000356660 RALBP1Q15311 655 aa16.29■□□□□ 0.2
BDNF-202ENST00000356660 NAP1L5Q96NT1 182 aaPredicted RBP16.29■□□□□ 0.2
BDNF-202ENST00000356660 ZNF644Q9H582 1327 aaPredicted RBP16.29■□□□□ 0.2
BDNF-202ENST00000356660 NLRP13Q86W25 1043 aa16.28■□□□□ 0.2
BDNF-202ENST00000356660 BECN1Q14457 450 aa16.28■□□□□ 0.2
BDNF-202ENST00000356660 NCOA2Q15596 1464 aa16.28■□□□□ 0.2
BDNF-202ENST00000356660 CASKIN1Q8WXD9 1431 aa16.27■□□□□ 0.2
BDNF-202ENST00000356660 MYBBP1AQ9BQG0 1328 aaKnown RBP16.27■□□□□ 0.2
BDNF-202ENST00000356660 MS4A1P11836 297 aa16.27■□□□□ 0.2
BDNF-202ENST00000356660 CFTRP13569 1480 aa16.27■□□□□ 0.19
BDNF-202ENST00000356660 PTPRKQ15262 1439 aa16.27■□□□□ 0.19
BDNF-202ENST00000356660 KTN1Q86UP2 1357 aaKnown RBP16.26■□□□□ 0.19
BDNF-202ENST00000356660 NEUROD2Q15784 382 aa16.26■□□□□ 0.19
BDNF-202ENST00000356660 AQRO60306 1485 aaKnown RBP eCLIP16.25■□□□□ 0.19
BDNF-202ENST00000356660 RAD54L2Q9Y4B4 1467 aa16.25■□□□□ 0.19
BDNF-202ENST00000356660 GZF1Q9H116 711 aaPredicted RBP16.25■□□□□ 0.19
BDNF-202ENST00000356660 PCF11O94913 1555 aaKnown RBP16.25■□□□□ 0.19
BDNF-202ENST00000356660 CADPSQ9ULU8 1353 aa16.24■□□□□ 0.19
BDNF-202ENST00000356660 KIF15Q9NS87 1388 aa16.24■□□□□ 0.19
BDNF-202ENST00000356660 KNSTRNQ9Y448 316 aa16.23■□□□□ 0.19
BDNF-202ENST00000356660 FRAT2O75474 233 aaPredicted RBP16.23■□□□□ 0.19
BDNF-202ENST00000356660 TNNT2P45379 298 aaPredicted RBP16.23■□□□□ 0.19
BDNF-202ENST00000356660 PDE3BQ13370 1112 aa16.23■□□□□ 0.19
BDNF-202ENST00000356660 ARID4BQ4LE39 1312 aaPredicted RBP16.22■□□□□ 0.19
BDNF-202ENST00000356660 FYCO1Q9BQS8 1478 aa16.21■□□□□ 0.19
BDNF-202ENST00000356660 HSP90AA1P07900 732 aaKnown RBP16.21■□□□□ 0.18
BDNF-202ENST00000356660 NCOA1Q15788 1441 aa16.2■□□□□ 0.18
BDNF-202ENST00000356660 FAM161AQ3B820 660 aa16.2■□□□□ 0.18
BDNF-202ENST00000356660 ROCK2O75116 1388 aaKnown RBP16.2■□□□□ 0.18
BDNF-202ENST00000356660 NUP155O75694 1391 aa16.19■□□□□ 0.18
BDNF-202ENST00000356660 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.19■□□□□ 0.18
BDNF-202ENST00000356660 MAP3K1Q13233 1512 aa16.18■□□□□ 0.18
BDNF-202ENST00000356660 CCDC146Q8IYE0 955 aa16.18■□□□□ 0.18
BDNF-202ENST00000356660 BICRAQ9NZM4 1560 aa16.16■□□□□ 0.18
BDNF-202ENST00000356660 PANK3Q9H999 370 aa16.15■□□□□ 0.18
BDNF-202ENST00000356660 CENPQQ7L2Z9 268 aaPredicted RBP16.15■□□□□ 0.18
BDNF-202ENST00000356660 BIVM-ERCC5R4GMW8 1640 aa16.14■□□□□ 0.17
BDNF-202ENST00000356660 RSPH6AQ9H0K4 717 aa16.13■□□□□ 0.17
BDNF-202ENST00000356660 TMF1P82094 1093 aa16.13■□□□□ 0.17
BDNF-202ENST00000356660 C20orf194Q5TEA3 1177 aa16.13■□□□□ 0.17
BDNF-202ENST00000356660 PTPN23Q9H3S7 1636 aa16.13■□□□□ 0.17
BDNF-202ENST00000356660 GOLGA2Q08379 1002 aa16.12■□□□□ 0.17
BDNF-202ENST00000356660 TRIM44Q96DX7 344 aaPredicted RBP16.12■□□□□ 0.17
BDNF-202ENST00000356660 UNC13AQ9UPW8 1703 aa16.12■□□□□ 0.17
BDNF-202ENST00000356660 ERCC6Q03468 1493 aa16.12■□□□□ 0.17
BDNF-202ENST00000356660 PEG3Q9GZU2 1588 aa16.12■□□□□ 0.17
BDNF-202ENST00000356660 L1TD1Q5T7N2 865 aaKnown RBP16.1■□□□□ 0.17
BDNF-202ENST00000356660 PNNQ9H307 717 aaKnown RBP16.1■□□□□ 0.17
BDNF-202ENST00000356660 BRD4O60885 1362 aaPredicted RBP16.1■□□□□ 0.17
BDNF-202ENST00000356660 NCAPD3P42695 1498 aa16.09■□□□□ 0.17
BDNF-202ENST00000356660 SAFB2Q14151 953 aaKnown RBP eCLIP16.08■□□□□ 0.16
BDNF-202ENST00000356660 ADAMTS8Q9UP79 889 aa16.08■□□□□ 0.16
BDNF-202ENST00000356660 ANKRD30BQ9BXX2 1392 aa16.08■□□□□ 0.16
BDNF-202ENST00000356660 FANCD2Q9BXW9 1451 aa16.08■□□□□ 0.16
BDNF-202ENST00000356660 ANP32BQ92688 251 aaKnown RBP16.07■□□□□ 0.16
BDNF-202ENST00000356660 CLUAP1Q96AJ1 413 aa16.07■□□□□ 0.16
BDNF-202ENST00000356660 HNRNPMP52272 730 aaKnown RBP eCLIP16.06■□□□□ 0.16
BDNF-202ENST00000356660 COG6Q9Y2V7 657 aa16.05■□□□□ 0.16
BDNF-202ENST00000356660 GOLGA6L3A6NEY3 463 aa16.04■□□□□ 0.16
BDNF-202ENST00000356660 ANKRD30AQ9BXX3 1397 aa16.04■□□□□ 0.16
BDNF-202ENST00000356660 NBPF1Q3BBV0 1214 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 5.3 ms