RNA–Protein interactions for RNA: ENST00000354757.4

PCDHB11-201, Transcript of protocadherin beta 11, humanhuman

APPRIS P1 BASIC

Gene PCDHB11, Length 4,198 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-201ENST00000354757 PPM1GO15355 546 aaPredicted RBP16.65■□□□□ 0.26
PCDHB11-201ENST00000354757 ZNF608Q9ULD9 1512 aaPredicted RBP16.65■□□□□ 0.26
PCDHB11-201ENST00000354757 IFT140Q96RY7 1462 aa16.65■□□□□ 0.26
PCDHB11-201ENST00000354757 LRRC9Q6ZRR7 1453 aa16.65■□□□□ 0.26
PCDHB11-201ENST00000354757 ZBTB7CA1YPR0 619 aa16.64■□□□□ 0.25
PCDHB11-201ENST00000354757 DAXXQ9UER7 740 aaPredicted RBP16.64■□□□□ 0.25
PCDHB11-201ENST00000354757 PRDM2Q13029 1718 aa16.64■□□□□ 0.25
PCDHB11-201ENST00000354757 ANP32EQ9BTT0 268 aa16.64■□□□□ 0.25
PCDHB11-201ENST00000354757 KANK1Q14678 1352 aa16.63■□□□□ 0.25
PCDHB11-201ENST00000354757 POGKQ9P215 609 aa16.63■□□□□ 0.25
PCDHB11-201ENST00000354757 FGD6Q6ZV73 1430 aa16.62■□□□□ 0.25
PCDHB11-201ENST00000354757 AFAP1Q8N556 730 aa16.62■□□□□ 0.25
PCDHB11-201ENST00000354757 KNSTRNQ9Y448 316 aa16.61■□□□□ 0.25
PCDHB11-201ENST00000354757 LAMC3Q9Y6N6 1575 aa16.61■□□□□ 0.25
PCDHB11-201ENST00000354757 ABCA10Q8WWZ4 1543 aa16.6■□□□□ 0.25
PCDHB11-201ENST00000354757 CASKIN1Q8WXD9 1431 aa16.6■□□□□ 0.25
PCDHB11-201ENST00000354757 WASHC2CQ9Y4E1 1318 aa16.59■□□□□ 0.25
PCDHB11-201ENST00000354757 NEUROD2Q15784 382 aa16.59■□□□□ 0.25
PCDHB11-201ENST00000354757 TIMELESSQ9UNS1 1208 aa16.58■□□□□ 0.24
PCDHB11-201ENST00000354757 NCOA2Q15596 1464 aa16.58■□□□□ 0.24
PCDHB11-201ENST00000354757 MYOM3Q5VTT5 1437 aa16.58■□□□□ 0.24
PCDHB11-201ENST00000354757 SUPT16HQ9Y5B9 1047 aaKnown RBP16.57■□□□□ 0.24
PCDHB11-201ENST00000354757 FAM69CQ0P6D2 419 aa16.56■□□□□ 0.24
PCDHB11-201ENST00000354757 SOX12O15370 315 aa16.55■□□□□ 0.24
PCDHB11-201ENST00000354757 RSPH4AQ5TD94 716 aa16.54■□□□□ 0.24
PCDHB11-201ENST00000354757 LMOD2Q6P5Q4 547 aa16.52■□□□□ 0.24
PCDHB11-201ENST00000354757 SRPK2P78362 688 aaKnown RBP16.51■□□□□ 0.23
PCDHB11-201ENST00000354757 ROCK2O75116 1388 aaKnown RBP16.51■□□□□ 0.23
PCDHB11-201ENST00000354757 TMF1P82094 1093 aa16.51■□□□□ 0.23
PCDHB11-201ENST00000354757 CDCA8Q53HL2 280 aa16.49■□□□□ 0.23
PCDHB11-201ENST00000354757 CDK13Q14004 1512 aaKnown RBP16.49■□□□□ 0.23
PCDHB11-201ENST00000354757 KIF15Q9NS87 1388 aa16.48■□□□□ 0.23
PCDHB11-201ENST00000354757 ST20-MTHFSA0A0A6YYL1 179 aa16.47■□□□□ 0.23
PCDHB11-201ENST00000354757 FYCO1Q9BQS8 1478 aa16.47■□□□□ 0.23
PCDHB11-201ENST00000354757 PLB1Q6P1J6 1458 aa16.46■□□□□ 0.23
PCDHB11-201ENST00000354757 NUTM2FA1L443 756 aa16.46■□□□□ 0.23
PCDHB11-201ENST00000354757 TRAK1Q9UPV9 953 aa16.45■□□□□ 0.22
PCDHB11-201ENST00000354757 NPM2Q86SE8 214 aaKnown RBP16.45■□□□□ 0.22
PCDHB11-201ENST00000354757 KIAA0586Q9BVV6 1533 aa16.44■□□□□ 0.22
PCDHB11-201ENST00000354757 A0A0G2JS52 829 aa16.44■□□□□ 0.22
PCDHB11-201ENST00000354757 CCDC136Q96JN2 1154 aa16.44■□□□□ 0.22
PCDHB11-201ENST00000354757 ZBTB47Q9UFB7 747 aaPredicted RBP16.44■□□□□ 0.22
PCDHB11-201ENST00000354757 SYNJ2O15056 1496 aa16.42■□□□□ 0.22
PCDHB11-201ENST00000354757 CCDC144AA2RUR9 1427 aa16.42■□□□□ 0.22
PCDHB11-201ENST00000354757 U2SURPO15042 1029 aaKnown RBP16.41■□□□□ 0.22
PCDHB11-201ENST00000354757 TSHZ2Q9NRE2 1034 aa16.41■□□□□ 0.22
PCDHB11-201ENST00000354757 RAPGEF3O95398 923 aa16.41■□□□□ 0.22
PCDHB11-201ENST00000354757 ANKRD50Q9ULJ7 1429 aa16.41■□□□□ 0.22
PCDHB11-201ENST00000354757 RRBP1Q9P2E9 1410 aaKnown RBP16.4■□□□□ 0.22
PCDHB11-201ENST00000354757 GRIN2AQ12879 1464 aa16.4■□□□□ 0.22
PCDHB11-201ENST00000354757 EFCAB5A4FU69 1503 aa16.39■□□□□ 0.21
PCDHB11-201ENST00000354757 TIAM1Q13009 1591 aa16.39■□□□□ 0.21
PCDHB11-201ENST00000354757 BIVM-ERCC5R4GMW8 1640 aa16.38■□□□□ 0.21
PCDHB11-201ENST00000354757 IQGAP2Q13576 1575 aa16.37■□□□□ 0.21
PCDHB11-201ENST00000354757 TROQ12816 1431 aaPredicted RBP16.37■□□□□ 0.21
PCDHB11-201ENST00000354757 EPRSP07814 1512 aaKnown RBP16.37■□□□□ 0.21
PCDHB11-201ENST00000354757 RTL5Q5HYW3 569 aaPredicted RBP16.37■□□□□ 0.21
PCDHB11-201ENST00000354757 CFAP53Q96M91 514 aa16.36■□□□□ 0.21
PCDHB11-201ENST00000354757 ARHGAP5Q13017 1502 aa16.36■□□□□ 0.21
PCDHB11-201ENST00000354757 PCF11O94913 1555 aaKnown RBP16.36■□□□□ 0.21
PCDHB11-201ENST00000354757 LAS1LQ9Y4W2 734 aaKnown RBP16.36■□□□□ 0.21
PCDHB11-201ENST00000354757 UACAQ9BZF9 1416 aa16.34■□□□□ 0.21
PCDHB11-201ENST00000354757 MORC1Q86VD1 984 aa16.33■□□□□ 0.21
PCDHB11-201ENST00000354757 SCAPERQ9BY12 1400 aa16.32■□□□□ 0.2
PCDHB11-201ENST00000354757 HAP1P54257 671 aaPredicted RBP16.32■□□□□ 0.2
PCDHB11-201ENST00000354757 ARHGEF11O15085 1522 aa16.31■□□□□ 0.2
PCDHB11-201ENST00000354757 HDGFP51858 240 aaKnown RBP16.29■□□□□ 0.2
PCDHB11-201ENST00000354757 TMEM132EQ6IEE7 984 aa16.28■□□□□ 0.2
PCDHB11-201ENST00000354757 USP47Q96K76 1375 aa16.28■□□□□ 0.2
PCDHB11-201ENST00000354757 NBR1Q14596 966 aa16.28■□□□□ 0.2
PCDHB11-201ENST00000354757 MAGI1Q96QZ7 1491 aaPredicted RBP16.28■□□□□ 0.2
PCDHB11-201ENST00000354757 PAK3O75914 559 aaPredicted RBP16.27■□□□□ 0.19
PCDHB11-201ENST00000354757 C9orf84Q5VXU9 1444 aa16.26■□□□□ 0.19
PCDHB11-201ENST00000354757 PANK3Q9H999 370 aa16.26■□□□□ 0.19
PCDHB11-201ENST00000354757 CUL7Q14999 1698 aa16.26■□□□□ 0.19
PCDHB11-201ENST00000354757 MAPK8IP3Q9UPT6 1336 aa16.26■□□□□ 0.19
PCDHB11-201ENST00000354757 EHBP1L1Q8N3D4 1523 aa16.26■□□□□ 0.19
PCDHB11-201ENST00000354757 FRAT1Q92837 279 aaPredicted RBP16.26■□□□□ 0.19
PCDHB11-201ENST00000354757 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.26■□□□□ 0.19
PCDHB11-201ENST00000354757 NBPF8Q3BBV2 869 aa16.25■□□□□ 0.19
PCDHB11-201ENST00000354757 MINK1Q8N4C8 1332 aaPredicted RBP16.25■□□□□ 0.19
PCDHB11-201ENST00000354757 CCER2I3L3R5 266 aa16.25■□□□□ 0.19
PCDHB11-201ENST00000354757 NBPF1Q3BBV0 1214 aa16.25■□□□□ 0.19
PCDHB11-201ENST00000354757 RBM19Q9Y4C8 960 aaKnown RBP16.25■□□□□ 0.19
PCDHB11-201ENST00000354757 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.24■□□□□ 0.19
PCDHB11-201ENST00000354757 NUDCQ9Y266 331 aa16.24■□□□□ 0.19
PCDHB11-201ENST00000354757 KTN1Q86UP2 1357 aaKnown RBP16.24■□□□□ 0.19
PCDHB11-201ENST00000354757 HECW1Q76N89 1606 aa16.24■□□□□ 0.19
PCDHB11-201ENST00000354757 CFAP70Q5T0N1 1121 aa16.22■□□□□ 0.19
PCDHB11-201ENST00000354757 B4GALNT3Q6L9W6 998 aa16.22■□□□□ 0.19
PCDHB11-201ENST00000354757 NAIPQ13075 1403 aa16.22■□□□□ 0.19
PCDHB11-201ENST00000354757 DAPK1P53355 1430 aa16.21■□□□□ 0.19
PCDHB11-201ENST00000354757 MIA2Q96PC5 1412 aa16.21■□□□□ 0.19
PCDHB11-201ENST00000354757 U2AF1L5P0DN76 240 aaPredicted RBP16.21■□□□□ 0.19
PCDHB11-201ENST00000354757 U2AF1Q01081 240 aaKnown RBP eCLIP16.21■□□□□ 0.19
PCDHB11-201ENST00000354757 CCDC146Q8IYE0 955 aa16.21■□□□□ 0.19
PCDHB11-201ENST00000354757 HFM1A2PYH4 1435 aa16.21■□□□□ 0.19
PCDHB11-201ENST00000354757 KIF21AQ7Z4S6 1674 aa16.2■□□□□ 0.18
PCDHB11-201ENST00000354757 VGFO15240 615 aaPredicted RBP16.2■□□□□ 0.18
PCDHB11-201ENST00000354757 EID1Q9Y6B2 187 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms