RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 CHIC2Q9UKJ5 165 aa12.61□□□□□ -0.39
TRIM55-204ENST00000353317 TTC37Q6PGP7 1564 aa12.6□□□□□ -0.39
TRIM55-204ENST00000353317 CDC42BPBQ9Y5S2 1711 aa12.6□□□□□ -0.39
TRIM55-204ENST00000353317 CFDP1Q9UEE9 299 aaPredicted RBP12.59□□□□□ -0.39
TRIM55-204ENST00000353317 ZNF777Q9ULD5 760 aaPredicted RBP12.59□□□□□ -0.39
TRIM55-204ENST00000353317 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.59□□□□□ -0.39
TRIM55-204ENST00000353317 DHX57Q6P158 1386 aaKnown RBP12.59□□□□□ -0.39
TRIM55-204ENST00000353317 SETD5Q9C0A6 1442 aa12.59□□□□□ -0.39
TRIM55-204ENST00000353317 ITSN2Q9NZM3 1697 aa12.58□□□□□ -0.4
TRIM55-204ENST00000353317 CAMSAP2Q08AD1 1489 aa12.57□□□□□ -0.4
TRIM55-204ENST00000353317 ABCC5O15440 1437 aa12.57□□□□□ -0.4
TRIM55-204ENST00000353317 RRP7BPQ9NSQ0 103 aa12.57□□□□□ -0.4
TRIM55-204ENST00000353317 NAIPQ13075 1403 aa12.56□□□□□ -0.4
TRIM55-204ENST00000353317 KDM6BO15054 1643 aa12.55□□□□□ -0.4
TRIM55-204ENST00000353317 DAPK1P53355 1430 aa12.55□□□□□ -0.4
TRIM55-204ENST00000353317 DNMT1P26358 1616 aaKnown RBP12.55□□□□□ -0.4
TRIM55-204ENST00000353317 RIMBP3CA6NJZ7 1639 aa12.54□□□□□ -0.4
TRIM55-204ENST00000353317 RIMBP3BA6NNM3 1639 aa12.54□□□□□ -0.4
TRIM55-204ENST00000353317 RIMBP3Q9UFD9 1639 aa12.54□□□□□ -0.4
TRIM55-204ENST00000353317 HFM1A2PYH4 1435 aa12.54□□□□□ -0.4
TRIM55-204ENST00000353317 PREX2Q70Z35 1606 aa12.53□□□□□ -0.4
TRIM55-204ENST00000353317 SAMD9LQ8IVG5 1584 aa12.53□□□□□ -0.4
TRIM55-204ENST00000353317 CYB5RLQ6IPT4 315 aa12.53□□□□□ -0.4
TRIM55-204ENST00000353317 HNRNPMP52272 730 aaKnown RBP eCLIP12.52□□□□□ -0.4
TRIM55-204ENST00000353317 ASXL2Q76L83 1435 aa12.51□□□□□ -0.41
TRIM55-204ENST00000353317 MYO5CQ9NQX4 1742 aa12.51□□□□□ -0.41
TRIM55-204ENST00000353317 WDR7Q9Y4E6 1490 aa12.5□□□□□ -0.41
TRIM55-204ENST00000353317 MBD5Q9P267 1494 aa12.5□□□□□ -0.41
TRIM55-204ENST00000353317 MAPKBP1O60336 1514 aa12.5□□□□□ -0.41
TRIM55-204ENST00000353317 CROCC2H7BZ55 1655 aa12.49□□□□□ -0.41
TRIM55-204ENST00000353317 AKNAQ7Z591 1439 aa12.49□□□□□ -0.41
TRIM55-204ENST00000353317 GCC2Q8IWJ2 1684 aa12.48□□□□□ -0.41
TRIM55-204ENST00000353317 ARHGAP5Q13017 1502 aa12.48□□□□□ -0.41
TRIM55-204ENST00000353317 ARHGEF12Q9NZN5 1544 aa12.48□□□□□ -0.41
TRIM55-204ENST00000353317 CLSPNQ9HAW4 1339 aa12.47□□□□□ -0.41
TRIM55-204ENST00000353317 PLCH2O75038 1416 aa12.47□□□□□ -0.41
TRIM55-204ENST00000353317 DNAJC5Q9H3Z4 198 aa12.46□□□□□ -0.41
TRIM55-204ENST00000353317 NCOA1Q15788 1441 aa12.46□□□□□ -0.41
TRIM55-204ENST00000353317 SYCP2Q9BX26 1530 aa12.46□□□□□ -0.41
TRIM55-204ENST00000353317 DENND4BO75064 1496 aaPredicted RBP12.44□□□□□ -0.42
TRIM55-204ENST00000353317 ROCK1Q13464 1354 aa12.44□□□□□ -0.42
TRIM55-204ENST00000353317 ABCA9Q8IUA7 1624 aa12.44□□□□□ -0.42
TRIM55-204ENST00000353317 ADGBQ8N7X0 1667 aa12.43□□□□□ -0.42
TRIM55-204ENST00000353317 NPM1P06748 294 aaKnown RBP eCLIP12.43□□□□□ -0.42
TRIM55-204ENST00000353317 ARHGEF5Q12774 1597 aa12.43□□□□□ -0.42
TRIM55-204ENST00000353317 SIN3AQ96ST3 1273 aa12.42□□□□□ -0.42
TRIM55-204ENST00000353317 C9orf84Q5VXU9 1444 aa12.42□□□□□ -0.42
TRIM55-204ENST00000353317 ADGRL2O95490 1459 aa12.42□□□□□ -0.42
TRIM55-204ENST00000353317 TRAPPC8Q9Y2L5 1435 aa12.4□□□□□ -0.42
TRIM55-204ENST00000353317 EFCAB2Q5VUJ9 269 aa12.4□□□□□ -0.42
TRIM55-204ENST00000353317 CCDC141Q6ZP82 1450 aa12.4□□□□□ -0.42
TRIM55-204ENST00000353317 ABCC1P33527 1531 aa12.39□□□□□ -0.43
TRIM55-204ENST00000353317 AFAP1Q8N556 730 aa12.39□□□□□ -0.43
TRIM55-204ENST00000353317 SHANK2Q9UPX8 1470 aa12.39□□□□□ -0.43
TRIM55-204ENST00000353317 KIAA1107Q9UPP5 1409 aa12.38□□□□□ -0.43
TRIM55-204ENST00000353317 TSPY4P0CV99 314 aa12.38□□□□□ -0.43
TRIM55-204ENST00000353317 TSPY10P0CW01 314 aa12.38□□□□□ -0.43
TRIM55-204ENST00000353317 TRIM52Q96A61 297 aa12.38□□□□□ -0.43
TRIM55-204ENST00000353317 FANCAO15360 1455 aa12.38□□□□□ -0.43
TRIM55-204ENST00000353317 FOXD1Q16676 465 aa12.38□□□□□ -0.43
TRIM55-204ENST00000353317 ANKRD30AQ9BXX3 1397 aa12.37□□□□□ -0.43
TRIM55-204ENST00000353317 ARAP3Q8WWN8 1544 aa12.37□□□□□ -0.43
TRIM55-204ENST00000353317 MPHOSPH9Q99550 1183 aa12.35□□□□□ -0.43
TRIM55-204ENST00000353317 ANKRD50Q9ULJ7 1429 aa12.35□□□□□ -0.43
TRIM55-204ENST00000353317 KIF15Q9NS87 1388 aa12.35□□□□□ -0.43
TRIM55-204ENST00000353317 CD109Q6YHK3 1445 aa12.35□□□□□ -0.43
TRIM55-204ENST00000353317 MAST1Q9Y2H9 1570 aa12.34□□□□□ -0.43
TRIM55-204ENST00000353317 MYT1Q01538 1121 aa12.34□□□□□ -0.43
TRIM55-204ENST00000353317 RSPH4AQ5TD94 716 aa12.34□□□□□ -0.43
TRIM55-204ENST00000353317 PLEKHH2Q8IVE3 1493 aa12.34□□□□□ -0.43
TRIM55-204ENST00000353317 PZPP20742 1482 aa12.33□□□□□ -0.44
TRIM55-204ENST00000353317 SCAPERQ9BY12 1400 aa12.32□□□□□ -0.44
TRIM55-204ENST00000353317 ADGRL1O94910 1474 aa12.31□□□□□ -0.44
TRIM55-204ENST00000353317 MAP3K4Q9Y6R4 1608 aa12.3□□□□□ -0.44
TRIM55-204ENST00000353317 PLXNC1O60486 1568 aa12.3□□□□□ -0.44
TRIM55-204ENST00000353317 DIP2BQ9P265 1576 aa12.29□□□□□ -0.44
TRIM55-204ENST00000353317 ZFYVE16Q7Z3T8 1539 aa12.28□□□□□ -0.44
TRIM55-204ENST00000353317 SLC4A1APQ9BWU0 796 aaKnown RBP12.28□□□□□ -0.44
TRIM55-204ENST00000353317 TSPOAP1O95153 1857 aa12.28□□□□□ -0.44
TRIM55-204ENST00000353317 FAM69CQ0P6D2 419 aa12.28□□□□□ -0.44
TRIM55-204ENST00000353317 SUPT16HQ9Y5B9 1047 aaKnown RBP12.28□□□□□ -0.44
TRIM55-204ENST00000353317 SPAG9O60271 1321 aaKnown RBP12.28□□□□□ -0.44
TRIM55-204ENST00000353317 NUP155O75694 1391 aa12.27□□□□□ -0.45
TRIM55-204ENST00000353317 INO80Q9ULG1 1556 aaPredicted RBP12.26□□□□□ -0.45
TRIM55-204ENST00000353317 KIDINS220Q9ULH0 1771 aa12.26□□□□□ -0.45
TRIM55-204ENST00000353317 PPRC1Q5VV67 1664 aaKnown RBP12.26□□□□□ -0.45
TRIM55-204ENST00000353317 GLI2P10070 1586 aa12.26□□□□□ -0.45
TRIM55-204ENST00000353317 ANKRD30BQ9BXX2 1392 aa12.26□□□□□ -0.45
TRIM55-204ENST00000353317 RAPGEF3O95398 923 aa12.26□□□□□ -0.45
TRIM55-204ENST00000353317 KIF13AQ9H1H9 1805 aa12.26□□□□□ -0.45
TRIM55-204ENST00000353317 ATP7AQ04656 1500 aa12.25□□□□□ -0.45
TRIM55-204ENST00000353317 PKD2Q13563 968 aa12.24□□□□□ -0.45
TRIM55-204ENST00000353317 RTEL1-TNFRSF6BF6WH68 1400 aa12.24□□□□□ -0.45
TRIM55-204ENST00000353317 DUOX2Q9NRD8 1548 aa12.24□□□□□ -0.45
TRIM55-204ENST00000353317 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.23□□□□□ -0.45
TRIM55-204ENST00000353317 KDM5DQ9BY66 1539 aa12.23□□□□□ -0.45
TRIM55-204ENST00000353317 POGZQ7Z3K3 1410 aa12.22□□□□□ -0.45
TRIM55-204ENST00000353317 UNC13BO14795 1591 aa12.22□□□□□ -0.45
TRIM55-204ENST00000353317 KDM5CP41229 1560 aa12.22□□□□□ -0.45
TRIM55-204ENST00000353317 PPP1R15AO75807 674 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms