RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 JPH4Q96JJ6 628 aa21.08■□□□□ 0.96
VIPAS39-202ENST00000343765 ABCC5O15440 1437 aa21.06■□□□□ 0.96
VIPAS39-202ENST00000343765 ZNF777Q9ULD5 760 aaPredicted RBP21.06■□□□□ 0.96
VIPAS39-202ENST00000343765 KDM5BQ9UGL1 1544 aa21.05■□□□□ 0.96
VIPAS39-202ENST00000343765 CFDP1Q9UEE9 299 aaPredicted RBP21.04■□□□□ 0.96
VIPAS39-202ENST00000343765 TROQ12816 1431 aaPredicted RBP21.03■□□□□ 0.96
VIPAS39-202ENST00000343765 ANP32CO43423 234 aa21.03■□□□□ 0.96
VIPAS39-202ENST00000343765 CARMIL2Q6F5E8 1435 aa21.02■□□□□ 0.96
VIPAS39-202ENST00000343765 DNMT1P26358 1616 aaKnown RBP21.01■□□□□ 0.95
VIPAS39-202ENST00000343765 ROCK1Q13464 1354 aa21■□□□□ 0.95
VIPAS39-202ENST00000343765 NUP160Q12769 1436 aa20.99■□□□□ 0.95
VIPAS39-202ENST00000343765 L3MBTL2Q969R5 705 aa20.98■□□□□ 0.95
VIPAS39-202ENST00000343765 SLC4A1APQ9BWU0 796 aaKnown RBP20.97■□□□□ 0.95
VIPAS39-202ENST00000343765 CAMSAP2Q08AD1 1489 aa20.97■□□□□ 0.95
VIPAS39-202ENST00000343765 KIF14Q15058 1648 aa20.97■□□□□ 0.95
VIPAS39-202ENST00000343765 HSPA5P11021 654 aaKnown RBP20.97■□□□□ 0.95
VIPAS39-202ENST00000343765 SUPT16HQ9Y5B9 1047 aaKnown RBP20.96■□□□□ 0.95
VIPAS39-202ENST00000343765 GPATCH8Q9UKJ3 1502 aaKnown RBP20.95■□□□□ 0.94
VIPAS39-202ENST00000343765 ANKRD30BQ9BXX2 1392 aa20.91■□□□□ 0.94
VIPAS39-202ENST00000343765 PLEKHD1A6NEE1 506 aa20.91■□□□□ 0.94
VIPAS39-202ENST00000343765 CCER2I3L3R5 266 aa20.9■□□□□ 0.94
VIPAS39-202ENST00000343765 EIF4G2P78344 907 aaKnown RBP eCLIP20.89■□□□□ 0.93
VIPAS39-202ENST00000343765 ITSN2Q9NZM3 1697 aa20.89■□□□□ 0.93
VIPAS39-202ENST00000343765 WASHC2AQ641Q2 1341 aa20.88■□□□□ 0.93
VIPAS39-202ENST00000343765 NCOA1Q15788 1441 aa20.87■□□□□ 0.93
VIPAS39-202ENST00000343765 ATP10BO94823 1461 aa20.85■□□□□ 0.93
VIPAS39-202ENST00000343765 RPRD2Q5VT52 1461 aaKnown RBP20.85■□□□□ 0.93
VIPAS39-202ENST00000343765 NBPF8Q3BBV2 869 aa20.85■□□□□ 0.93
VIPAS39-202ENST00000343765 ADCY10Q96PN6 1610 aa20.85■□□□□ 0.93
VIPAS39-202ENST00000343765 ABCA8O94911 1581 aa20.84■□□□□ 0.93
VIPAS39-202ENST00000343765 PZPP20742 1482 aa20.82■□□□□ 0.92
VIPAS39-202ENST00000343765 ANKRD30AQ9BXX3 1397 aa20.81■□□□□ 0.92
VIPAS39-202ENST00000343765 TEX14Q8IWB6 1497 aa20.81■□□□□ 0.92
VIPAS39-202ENST00000343765 ADGBQ8N7X0 1667 aa20.8■□□□□ 0.92
VIPAS39-202ENST00000343765 PTPRGP23470 1445 aa20.79■□□□□ 0.92
VIPAS39-202ENST00000343765 C11orf95C9JLR9 678 aaPredicted RBP20.79■□□□□ 0.92
VIPAS39-202ENST00000343765 PKD2Q13563 968 aa20.79■□□□□ 0.92
VIPAS39-202ENST00000343765 ZNF326Q5BKZ1 582 aaKnown RBP20.77■□□□□ 0.92
VIPAS39-202ENST00000343765 BCANQ96GW7 911 aa20.77■□□□□ 0.92
VIPAS39-202ENST00000343765 ADGRL2O95490 1459 aa20.77■□□□□ 0.92
VIPAS39-202ENST00000343765 ABCC10Q5T3U5 1492 aa20.77■□□□□ 0.92
VIPAS39-202ENST00000343765 CROCC2H7BZ55 1655 aa20.77■□□□□ 0.92
VIPAS39-202ENST00000343765 CDC42BPAQ5VT25 1732 aa20.77■□□□□ 0.92
VIPAS39-202ENST00000343765 ANKRD50Q9ULJ7 1429 aa20.77■□□□□ 0.92
VIPAS39-202ENST00000343765 HNRNPMP52272 730 aaKnown RBP eCLIP20.76■□□□□ 0.91
VIPAS39-202ENST00000343765 C9orf84Q5VXU9 1444 aa20.75■□□□□ 0.91
VIPAS39-202ENST00000343765 KIAA1107Q9UPP5 1409 aa20.74■□□□□ 0.91
VIPAS39-202ENST00000343765 TSPY4P0CV99 314 aa20.74■□□□□ 0.91
VIPAS39-202ENST00000343765 TSPY10P0CW01 314 aa20.74■□□□□ 0.91
VIPAS39-202ENST00000343765 FKBP8Q14318 412 aa20.73■□□□□ 0.91
VIPAS39-202ENST00000343765 CCDC7Q96M83 1385 aa20.72■□□□□ 0.91
VIPAS39-202ENST00000343765 NUP155O75694 1391 aa20.71■□□□□ 0.91
VIPAS39-202ENST00000343765 CNTLNQ9NXG0 1405 aa20.71■□□□□ 0.91
VIPAS39-202ENST00000343765 HNRNPUQ00839 825 aaKnown RBP eCLIP20.68■□□□□ 0.9
VIPAS39-202ENST00000343765 CHD1O14646 1710 aa20.68■□□□□ 0.9
VIPAS39-202ENST00000343765 KIF15Q9NS87 1388 aa20.67■□□□□ 0.9
VIPAS39-202ENST00000343765 KIF7Q2M1P5 1343 aa20.66■□□□□ 0.9
VIPAS39-202ENST00000343765 SHANK2Q9UPX8 1470 aa20.66■□□□□ 0.9
VIPAS39-202ENST00000343765 POLR3GLQ9BT43 218 aa20.65■□□□□ 0.9
VIPAS39-202ENST00000343765 CCDC184Q52MB2 194 aa20.65■□□□□ 0.9
VIPAS39-202ENST00000343765 SPATA31E1Q6ZUB1 1445 aa20.64■□□□□ 0.89
VIPAS39-202ENST00000343765 NEFLP07196 543 aa20.63■□□□□ 0.89
VIPAS39-202ENST00000343765 CNGB1Q14028 1251 aaPredicted RBP20.63■□□□□ 0.89
VIPAS39-202ENST00000343765 MBD5Q9P267 1494 aa20.61■□□□□ 0.89
VIPAS39-202ENST00000343765 PRKRIP1Q9H875 184 aaPredicted RBP20.6■□□□□ 0.89
VIPAS39-202ENST00000343765 ERCC6L2Q5T890 1561 aa20.6■□□□□ 0.89
VIPAS39-202ENST00000343765 SAMD9LQ8IVG5 1584 aa20.59■□□□□ 0.89
VIPAS39-202ENST00000343765 KDM2AQ9Y2K7 1162 aa20.59■□□□□ 0.89
VIPAS39-202ENST00000343765 USP47Q96K76 1375 aa20.59■□□□□ 0.89
VIPAS39-202ENST00000343765 CCDC141Q6ZP82 1450 aa20.58■□□□□ 0.89
VIPAS39-202ENST00000343765 CDC42BPBQ9Y5S2 1711 aa20.57■□□□□ 0.88
VIPAS39-202ENST00000343765 FAM9BQ8IZU0 186 aa20.57■□□□□ 0.88
VIPAS39-202ENST00000343765 ARHGEF5Q12774 1597 aa20.56■□□□□ 0.88
VIPAS39-202ENST00000343765 MRS2Q9HD23 443 aa20.56■□□□□ 0.88
VIPAS39-202ENST00000343765 PREX2Q70Z35 1606 aa20.56■□□□□ 0.88
VIPAS39-202ENST00000343765 ARHGAP5Q13017 1502 aa20.56■□□□□ 0.88
VIPAS39-202ENST00000343765 SYCP2Q9BX26 1530 aa20.55■□□□□ 0.88
VIPAS39-202ENST00000343765 TTC37Q6PGP7 1564 aa20.55■□□□□ 0.88
VIPAS39-202ENST00000343765 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.54■□□□□ 0.884e-6■■■■□ 19.8
VIPAS39-202ENST00000343765 DCAF11Q8TEB1 546 aa20.52■□□□□ 0.88
VIPAS39-202ENST00000343765 CARD11Q9BXL7 1154 aa20.52■□□□□ 0.88
VIPAS39-202ENST00000343765 SHROOM2Q13796 1616 aa20.52■□□□□ 0.87
VIPAS39-202ENST00000343765 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.51■□□□□ 0.87
VIPAS39-202ENST00000343765 KDM5DQ9BY66 1539 aa20.51■□□□□ 0.87
VIPAS39-202ENST00000343765 TSHZ2Q9NRE2 1034 aa20.5■□□□□ 0.87
VIPAS39-202ENST00000343765 RSPH4AQ5TD94 716 aa20.49■□□□□ 0.87
VIPAS39-202ENST00000343765 ABCC2Q92887 1545 aa20.49■□□□□ 0.87
VIPAS39-202ENST00000343765 BCORL1Q5H9F3 1711 aa20.48■□□□□ 0.87
VIPAS39-202ENST00000343765 FAM135AQ9P2D6 1515 aa20.48■□□□□ 0.87
VIPAS39-202ENST00000343765 IRX6P78412 446 aaPredicted RBP20.47■□□□□ 0.87
VIPAS39-202ENST00000343765 POLR1AO95602 1720 aaPredicted RBP20.46■□□□□ 0.87
VIPAS39-202ENST00000343765 KDM5CP41229 1560 aa20.46■□□□□ 0.87
VIPAS39-202ENST00000343765 RALGAPBQ86X10 1494 aa20.46■□□□□ 0.87
VIPAS39-202ENST00000343765 UHRF1BP1Q6BDS2 1440 aa20.46■□□□□ 0.87
VIPAS39-202ENST00000343765 RGL3Q3MIN7 710 aa20.46■□□□□ 0.87
VIPAS39-202ENST00000343765 ARHGEF12Q9NZN5 1544 aa20.43■□□□□ 0.86
VIPAS39-202ENST00000343765 ST20-MTHFSA0A0A6YYL1 179 aa20.43■□□□□ 0.86
VIPAS39-202ENST00000343765 DHX29Q7Z478 1369 aaKnown RBP20.42■□□□□ 0.86
VIPAS39-202ENST00000343765 CCDC144AA2RUR9 1427 aa20.42■□□□□ 0.86
VIPAS39-202ENST00000343765 PLEKHH2Q8IVE3 1493 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms