RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 PTPRKQ15262 1439 aa21.82■■□□□ 1.08
TPM3-208ENST00000341485 ZNF777Q9ULD5 760 aaPredicted RBP21.79■■□□□ 1.08
TPM3-208ENST00000341485 CAMSAP2Q08AD1 1489 aa21.79■■□□□ 1.08
TPM3-208ENST00000341485 ZNF644Q9H582 1327 aaPredicted RBP21.78■■□□□ 1.08
TPM3-208ENST00000341485 KCNH8Q96L42 1107 aa21.76■■□□□ 1.07
TPM3-208ENST00000341485 DNMT1P26358 1616 aaKnown RBP21.75■■□□□ 1.07
TPM3-208ENST00000341485 DAPK1P53355 1430 aa21.75■■□□□ 1.07
TPM3-208ENST00000341485 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.74■■□□□ 1.073e-7■□□□□ 8.5
TPM3-208ENST00000341485 CHIC2Q9UKJ5 165 aa21.74■■□□□ 1.07
TPM3-208ENST00000341485 HFM1A2PYH4 1435 aa21.74■■□□□ 1.07
TPM3-208ENST00000341485 TTC37Q6PGP7 1564 aa21.73■■□□□ 1.07
TPM3-208ENST00000341485 PREX2Q70Z35 1606 aa21.73■■□□□ 1.07
TPM3-208ENST00000341485 NPM1P06748 294 aaKnown RBP eCLIP21.71■■□□□ 1.07
TPM3-208ENST00000341485 YTHDC1Q96MU7 727 aaKnown RBP21.71■■□□□ 1.07
TPM3-208ENST00000341485 ABCC5O15440 1437 aa21.71■■□□□ 1.07
TPM3-208ENST00000341485 CDC42BPBQ9Y5S2 1711 aa21.7■■□□□ 1.06
TPM3-208ENST00000341485 MYO5CQ9NQX4 1742 aa21.69■■□□□ 1.06
TPM3-208ENST00000341485 NAIPQ13075 1403 aa21.69■■□□□ 1.06
TPM3-208ENST00000341485 WDR7Q9Y4E6 1490 aa21.69■■□□□ 1.06
TPM3-208ENST00000341485 RRP7BPQ9NSQ0 103 aa21.68■■□□□ 1.06
TPM3-208ENST00000341485 AKNAQ7Z591 1439 aa21.67■■□□□ 1.06
TPM3-208ENST00000341485 SIN3AQ96ST3 1273 aa21.67■■□□□ 1.06
TPM3-208ENST00000341485 GTF3C3Q9Y5Q9 886 aa21.67■■□□□ 1.06
TPM3-208ENST00000341485 ARHGAP5Q13017 1502 aa21.67■■□□□ 1.06
TPM3-208ENST00000341485 GCC2Q8IWJ2 1684 aa21.66■■□□□ 1.06
TPM3-208ENST00000341485 CROCC2H7BZ55 1655 aa21.64■■□□□ 1.05
TPM3-208ENST00000341485 ROCK1Q13464 1354 aa21.64■■□□□ 1.05
TPM3-208ENST00000341485 ASXL2Q76L83 1435 aa21.64■■□□□ 1.05
TPM3-208ENST00000341485 SAMD9LQ8IVG5 1584 aa21.63■■□□□ 1.05
TPM3-208ENST00000341485 RIMBP3CA6NJZ7 1639 aa21.63■■□□□ 1.05
TPM3-208ENST00000341485 RIMBP3BA6NNM3 1639 aa21.63■■□□□ 1.05
TPM3-208ENST00000341485 RIMBP3Q9UFD9 1639 aa21.63■■□□□ 1.05
TPM3-208ENST00000341485 ADGBQ8N7X0 1667 aa21.61■■□□□ 1.05
TPM3-208ENST00000341485 PLCH2O75038 1416 aa21.6■■□□□ 1.05
TPM3-208ENST00000341485 HNRNPMP52272 730 aaKnown RBP eCLIP21.59■■□□□ 1.057e-7■■■□□ 16.5
TPM3-208ENST00000341485 ARHGEF5Q12774 1597 aa21.58■■□□□ 1.05
TPM3-208ENST00000341485 TIMELESSQ9UNS1 1208 aa21.58■■□□□ 1.05
TPM3-208ENST00000341485 CYB5RLQ6IPT4 315 aa21.57■■□□□ 1.04
TPM3-208ENST00000341485 SHANK2Q9UPX8 1470 aa21.56■■□□□ 1.04
TPM3-208ENST00000341485 TSPY4P0CV99 314 aa21.56■■□□□ 1.04
TPM3-208ENST00000341485 TSPY10P0CW01 314 aa21.56■■□□□ 1.04
TPM3-208ENST00000341485 PLEKHH2Q8IVE3 1493 aa21.56■■□□□ 1.04
TPM3-208ENST00000341485 EFCAB2Q5VUJ9 269 aa21.56■■□□□ 1.04
TPM3-208ENST00000341485 SYCP2Q9BX26 1530 aa21.55■■□□□ 1.04
TPM3-208ENST00000341485 ABCA9Q8IUA7 1624 aa21.55■■□□□ 1.04
TPM3-208ENST00000341485 ANKRD30AQ9BXX3 1397 aa21.55■■□□□ 1.04
TPM3-208ENST00000341485 ADGRL2O95490 1459 aa21.55■■□□□ 1.04
TPM3-208ENST00000341485 CCDC141Q6ZP82 1450 aa21.55■■□□□ 1.04
TPM3-208ENST00000341485 MBD5Q9P267 1494 aa21.55■■□□□ 1.04
TPM3-208ENST00000341485 RSPH4AQ5TD94 716 aa21.54■■□□□ 1.04
TPM3-208ENST00000341485 C9orf84Q5VXU9 1444 aa21.54■■□□□ 1.04
TPM3-208ENST00000341485 KDM6BO15054 1643 aa21.53■■□□□ 1.04
TPM3-208ENST00000341485 NCOA1Q15788 1441 aa21.53■■□□□ 1.04
TPM3-208ENST00000341485 ARAP3Q8WWN8 1544 aa21.53■■□□□ 1.04
TPM3-208ENST00000341485 KIAA1107Q9UPP5 1409 aa21.51■■□□□ 1.03
TPM3-208ENST00000341485 TRIM52Q96A61 297 aa21.51■■□□□ 1.03
TPM3-208ENST00000341485 PPP1R15AO75807 674 aaPredicted RBP21.49■■□□□ 1.03
TPM3-208ENST00000341485 ABCC1P33527 1531 aa21.47■■□□□ 1.03
TPM3-208ENST00000341485 FANCAO15360 1455 aa21.45■■□□□ 1.02
TPM3-208ENST00000341485 ARHGEF12Q9NZN5 1544 aa21.44■■□□□ 1.02
TPM3-208ENST00000341485 MAST1Q9Y2H9 1570 aa21.44■■□□□ 1.02
TPM3-208ENST00000341485 ANKRD50Q9ULJ7 1429 aa21.42■■□□□ 1.02
TPM3-208ENST00000341485 TONSLQ96HA7 1378 aa21.42■■□□□ 1.02
TPM3-208ENST00000341485 KIF15Q9NS87 1388 aa21.41■■□□□ 1.02
TPM3-208ENST00000341485 CD109Q6YHK3 1445 aa21.4■■□□□ 1.02
TPM3-208ENST00000341485 TRAPPC8Q9Y2L5 1435 aa21.38■■□□□ 1.01
TPM3-208ENST00000341485 MPHOSPH9Q99550 1183 aa21.37■■□□□ 1.01
TPM3-208ENST00000341485 DENND4BO75064 1496 aaPredicted RBP21.37■■□□□ 1.01
TPM3-208ENST00000341485 ADGRL1O94910 1474 aa21.36■■□□□ 1.01
TPM3-208ENST00000341485 PLXNC1O60486 1568 aa21.35■■□□□ 1.01
TPM3-208ENST00000341485 CFAP74Q9C0B2 1584 aa21.35■■□□□ 1.01
TPM3-208ENST00000341485 SCAPERQ9BY12 1400 aa21.33■■□□□ 1.01
TPM3-208ENST00000341485 DDX10Q13206 875 aaKnown RBP21.33■■□□□ 1
TPM3-208ENST00000341485 SLC4A1APQ9BWU0 796 aaKnown RBP21.32■■□□□ 1
TPM3-208ENST00000341485 SPAG9O60271 1321 aaKnown RBP21.32■■□□□ 1
TPM3-208ENST00000341485 AFAP1Q8N556 730 aa21.31■■□□□ 1
TPM3-208ENST00000341485 HIRIP3Q9BW71 556 aaPredicted RBP21.31■■□□□ 1
TPM3-208ENST00000341485 RTEL1-TNFRSF6BF6WH68 1400 aa21.29■■□□□ 1
TPM3-208ENST00000341485 DUOX2Q9NRD8 1548 aa21.28■■□□□ 1
TPM3-208ENST00000341485 GLI2P10070 1586 aa21.28■■□□□ 1
TPM3-208ENST00000341485 PZPP20742 1482 aa21.28■■□□□ 1
TPM3-208ENST00000341485 PELP1Q8IZL8 1130 aaKnown RBP21.27■■□□□ 1
TPM3-208ENST00000341485 ZFYVE16Q7Z3T8 1539 aa21.27■■□□□ 1
TPM3-208ENST00000341485 MYT1LQ9UL68 1186 aa21.27■□□□□ 0.99
TPM3-208ENST00000341485 MAP3K4Q9Y6R4 1608 aa21.27■□□□□ 0.99
TPM3-208ENST00000341485 NUP155O75694 1391 aa21.26■□□□□ 0.99
TPM3-208ENST00000341485 FOXD1Q16676 465 aa21.25■□□□□ 0.99
TPM3-208ENST00000341485 ATP7AQ04656 1500 aa21.24■□□□□ 0.99
TPM3-208ENST00000341485 NEO1Q92859 1461 aa21.24■□□□□ 0.99
TPM3-208ENST00000341485 ERBINQ96RT1 1412 aa21.24■□□□□ 0.99
TPM3-208ENST00000341485 FAM69CQ0P6D2 419 aa21.24■□□□□ 0.99
TPM3-208ENST00000341485 DIP2BQ9P265 1576 aa21.23■□□□□ 0.99
TPM3-208ENST00000341485 INO80Q9ULG1 1556 aaPredicted RBP21.23■□□□□ 0.99
TPM3-208ENST00000341485 KDM5DQ9BY66 1539 aa21.23■□□□□ 0.99
TPM3-208ENST00000341485 ZNF518AQ6AHZ1 1483 aa21.23■□□□□ 0.99
TPM3-208ENST00000341485 UNC13BO14795 1591 aa21.2■□□□□ 0.98
TPM3-208ENST00000341485 POGZQ7Z3K3 1410 aa21.19■□□□□ 0.98
TPM3-208ENST00000341485 PKD2Q13563 968 aa21.19■□□□□ 0.98
TPM3-208ENST00000341485 ANKRD30BQ9BXX2 1392 aa21.18■□□□□ 0.98
TPM3-208ENST00000341485 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.17■□□□□ 0.984e-9■■■■■ 28.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms