RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 AMPHP49418 695 aa11.19□□□□□ -0.62
HMGB1-203ENST00000341423 TULP1O00294 542 aaPredicted RBP11.18□□□□□ -0.62
HMGB1-203ENST00000341423 BAG6P46379 1132 aa11.18□□□□□ -0.62
HMGB1-203ENST00000341423 MRC2Q9UBG0 1479 aa11.18□□□□□ -0.62
HMGB1-203ENST00000341423 RTF1Q92541 710 aaKnown RBP11.18□□□□□ -0.62
HMGB1-203ENST00000341423 STRN4Q9NRL3 753 aa11.18□□□□□ -0.62
HMGB1-203ENST00000341423 NEUROD2Q15784 382 aa11.17□□□□□ -0.62
HMGB1-203ENST00000341423 FRAT2O75474 233 aaPredicted RBP11.17□□□□□ -0.62
HMGB1-203ENST00000341423 CTDP1Q9Y5B0 961 aaPredicted RBP11.16□□□□□ -0.62
HMGB1-203ENST00000341423 ZCCHC6Q5VYS8 1495 aaKnown RBP11.16□□□□□ -0.62
HMGB1-203ENST00000341423 ZNF316A6NFI3 1004 aaPredicted RBP11.15□□□□□ -0.62
HMGB1-203ENST00000341423 ERICH6Q7L0X2 663 aa11.15□□□□□ -0.62
HMGB1-203ENST00000341423 WDR43Q15061 677 aaKnown RBP eCLIP11.15□□□□□ -0.62
HMGB1-203ENST00000341423 GPRASP1Q5JY77 1395 aa11.15□□□□□ -0.63
HMGB1-203ENST00000341423 GPR162Q16538 588 aa11.14□□□□□ -0.63
HMGB1-203ENST00000341423 LTV1Q96GA3 475 aaPredicted RBP11.14□□□□□ -0.63
HMGB1-203ENST00000341423 HSPA2P54652 639 aa11.14□□□□□ -0.63
HMGB1-203ENST00000341423 PRDM11Q9NQV5 511 aa11.13□□□□□ -0.63
HMGB1-203ENST00000341423 GOLGA3Q08378 1498 aa11.13□□□□□ -0.63
HMGB1-203ENST00000341423 ESCO1Q5FWF5 840 aa11.13□□□□□ -0.63
HMGB1-203ENST00000341423 MAPK8IP3Q9UPT6 1336 aa11.13□□□□□ -0.63
HMGB1-203ENST00000341423 TONSLQ96HA7 1378 aa11.13□□□□□ -0.63
HMGB1-203ENST00000341423 VGFO15240 615 aaPredicted RBP11.12□□□□□ -0.63
HMGB1-203ENST00000341423 TRIM34Q9BYJ4 488 aa11.12□□□□□ -0.63
HMGB1-203ENST00000341423 MYH16Q9H6N6 1097 aa11.12□□□□□ -0.63
HMGB1-203ENST00000341423 GRM1Q13255 1194 aa11.12□□□□□ -0.63
HMGB1-203ENST00000341423 TAF7LQ5H9L4 462 aa11.11□□□□□ -0.63
HMGB1-203ENST00000341423 PNNQ9H307 717 aaKnown RBP11.11□□□□□ -0.63
HMGB1-203ENST00000341423 NCBP3Q53F19 620 aaKnown RBP11.1□□□□□ -0.63
HMGB1-203ENST00000341423 C8orf37Q96NL8 207 aa11.1□□□□□ -0.63
HMGB1-203ENST00000341423 RAPGEF4Q8WZA2 1011 aa11.09□□□□□ -0.63
HMGB1-203ENST00000341423 MAP3K9P80192 1104 aa11.09□□□□□ -0.63
HMGB1-203ENST00000341423 FBXW7Q969H0 707 aa11.08□□□□□ -0.63
HMGB1-203ENST00000341423 NLRP2Q9NX02 1062 aa11.08□□□□□ -0.63
HMGB1-203ENST00000341423 CLEC11AQ9Y240 323 aa11.08□□□□□ -0.63
HMGB1-203ENST00000341423 CNKSR2Q8WXI2 1034 aa11.08□□□□□ -0.64
HMGB1-203ENST00000341423 AIDAQ96BJ3 306 aa11.08□□□□□ -0.64
HMGB1-203ENST00000341423 TNIKQ9UKE5 1360 aa11.08□□□□□ -0.64
HMGB1-203ENST00000341423 IFT140Q96RY7 1462 aa11.08□□□□□ -0.64
HMGB1-203ENST00000341423 C1orf141Q5JVX7 400 aa11.07□□□□□ -0.64
HMGB1-203ENST00000341423 ZNF772Q68DY9 489 aaPredicted RBP11.07□□□□□ -0.64
HMGB1-203ENST00000341423 RBM33Q96EV2 1170 aaKnown RBP11.07□□□□□ -0.64
HMGB1-203ENST00000341423 PRG4Q92954 1404 aaPredicted RBP11.07□□□□□ -0.64
HMGB1-203ENST00000341423 IL27Q8NEV9 243 aa11.07□□□□□ -0.64
HMGB1-203ENST00000341423 CADPS2Q86UW7 1296 aa11.07□□□□□ -0.64
HMGB1-203ENST00000341423 TTC5Q8N0Z6 440 aa11.06□□□□□ -0.64
HMGB1-203ENST00000341423 KNSTRNQ9Y448 316 aa11.05□□□□□ -0.64
HMGB1-203ENST00000341423 CC2D2AQ9P2K1 1620 aa11.05□□□□□ -0.64
HMGB1-203ENST00000341423 TERF2IPQ9NYB0 399 aa11.05□□□□□ -0.64
HMGB1-203ENST00000341423 CLSTN1O94985 981 aa11.05□□□□□ -0.64
HMGB1-203ENST00000341423 RAPGEF3O95398 923 aa11.04□□□□□ -0.64
HMGB1-203ENST00000341423 TOM1L2Q6ZVM7 507 aa11.04□□□□□ -0.64
HMGB1-203ENST00000341423 ATAD2BQ9ULI0 1458 aa11.04□□□□□ -0.64
HMGB1-203ENST00000341423 MSH6P52701 1360 aa11.04□□□□□ -0.64
HMGB1-203ENST00000341423 OS9Q13438 667 aaPredicted RBP11.03□□□□□ -0.64
HMGB1-203ENST00000341423 LOC105371045A0A1W2PR82 267 aa11.03□□□□□ -0.64
HMGB1-203ENST00000341423 AQRO60306 1485 aaKnown RBP eCLIP11.03□□□□□ -0.642e-9■■■■□ 19.7
HMGB1-203ENST00000341423 STK32BQ9NY57 414 aa11.03□□□□□ -0.64
HMGB1-203ENST00000341423 FHAD1B1AJZ9 1412 aa11.02□□□□□ -0.64
HMGB1-203ENST00000341423 U2SURPO15042 1029 aaKnown RBP11.02□□□□□ -0.64
HMGB1-203ENST00000341423 TNNT2P45379 298 aaPredicted RBP11.02□□□□□ -0.64
HMGB1-203ENST00000341423 NOL10Q9BSC4 688 aaKnown RBP11.02□□□□□ -0.64
HMGB1-203ENST00000341423 RXRBP28702 533 aa11.02□□□□□ -0.65
HMGB1-203ENST00000341423 TTLL12Q14166 644 aaPredicted RBP11.01□□□□□ -0.65
HMGB1-203ENST00000341423 TEX14Q8IWB6 1497 aa11.01□□□□□ -0.65
HMGB1-203ENST00000341423 KCNJ4P48050 445 aa11.01□□□□□ -0.65
HMGB1-203ENST00000341423 LAS1LQ9Y4W2 734 aaKnown RBP11.01□□□□□ -0.65
HMGB1-203ENST00000341423 ZNF710Q8N1W2 664 aa11.01□□□□□ -0.65
HMGB1-203ENST00000341423 GRIN2BQ13224 1484 aa11□□□□□ -0.65
HMGB1-203ENST00000341423 AKNAQ7Z591 1439 aa10.99□□□□□ -0.65
HMGB1-203ENST00000341423 GAPVD1Q14C86 1478 aa10.99□□□□□ -0.65
HMGB1-203ENST00000341423 CEP162Q5TB80 1403 aa10.98□□□□□ -0.65
HMGB1-203ENST00000341423 GORABQ5T7V8 394 aa10.98□□□□□ -0.65
HMGB1-203ENST00000341423 PMFBP1Q8TBY8 1022 aa10.98□□□□□ -0.65
HMGB1-203ENST00000341423 HSP90B1P14625 803 aaKnown RBP10.98□□□□□ -0.65
HMGB1-203ENST00000341423 ANKRD30AQ9BXX3 1397 aa10.97□□□□□ -0.65
HMGB1-203ENST00000341423 ANP32CO43423 234 aa10.97□□□□□ -0.65
HMGB1-203ENST00000341423 PKD2Q13563 968 aa10.97□□□□□ -0.65
HMGB1-203ENST00000341423 CHMP3Q9Y3E7 222 aa10.97□□□□□ -0.65
HMGB1-203ENST00000341423 TRIM26Q12899 539 aaPredicted RBP10.96□□□□□ -0.65
HMGB1-203ENST00000341423 LRPPRCP42704 1394 aaKnown RBP10.96□□□□□ -0.65
HMGB1-203ENST00000341423 SLC26A8Q96RN1 970 aa10.96□□□□□ -0.66
HMGB1-203ENST00000341423 FBXO41Q8TF61 875 aa10.95□□□□□ -0.66
HMGB1-203ENST00000341423 CEBPAP49715 358 aaPredicted RBP10.95□□□□□ -0.66
HMGB1-203ENST00000341423 CD109Q6YHK3 1445 aa10.95□□□□□ -0.66
HMGB1-203ENST00000341423 HDAC5Q9UQL6 1122 aa10.95□□□□□ -0.66
HMGB1-203ENST00000341423 TEFQ10587 303 aa10.94□□□□□ -0.66
HMGB1-203ENST00000341423 NCAPD3P42695 1498 aa10.94□□□□□ -0.66
HMGB1-203ENST00000341423 LRRC59Q96AG4 307 aaKnown RBP10.94□□□□□ -0.66
HMGB1-203ENST00000341423 CARD11Q9BXL7 1154 aa10.94□□□□□ -0.66
HMGB1-203ENST00000341423 EEA1Q15075 1411 aa10.94□□□□□ -0.66
HMGB1-203ENST00000341423 CERKQ8TCT0 537 aa10.93□□□□□ -0.66
HMGB1-203ENST00000341423 FMN1Q68DA7 1419 aa10.93□□□□□ -0.66
HMGB1-203ENST00000341423 HIRIP3Q9BW71 556 aaPredicted RBP10.93□□□□□ -0.66
HMGB1-203ENST00000341423 RBM42Q9BTD8 480 aaKnown RBP10.92□□□□□ -0.66
HMGB1-203ENST00000341423 VPS37DQ86XT2 251 aa10.92□□□□□ -0.66
HMGB1-203ENST00000341423 NLRP13Q86W25 1043 aa10.91□□□□□ -0.66
HMGB1-203ENST00000341423 DCAF11Q8TEB1 546 aa10.91□□□□□ -0.66
HMGB1-203ENST00000341423 AMOTL1Q8IY63 956 aa10.91□□□□□ -0.66
HMGB1-203ENST00000341423 CENPBP07199 599 aaPredicted RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms