RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 ARID3CA6NKF2 412 aa20.57■□□□□ 0.88
TDP2-201ENST00000341060 JPH4Q96JJ6 628 aa20.56■□□□□ 0.88
TDP2-201ENST00000341060 ANP32CO43423 234 aa20.56■□□□□ 0.88
TDP2-201ENST00000341060 ADCY10Q96PN6 1610 aa20.55■□□□□ 0.88
TDP2-201ENST00000341060 TRIM52Q96A61 297 aa20.54■□□□□ 0.88
TDP2-201ENST00000341060 ABCC5O15440 1437 aa20.54■□□□□ 0.88
TDP2-201ENST00000341060 MPHOSPH9Q99550 1183 aa20.53■□□□□ 0.88
TDP2-201ENST00000341060 ADGBQ8N7X0 1667 aa20.52■□□□□ 0.88
TDP2-201ENST00000341060 CDK11AQ9UQ88 783 aaPredicted RBP20.52■□□□□ 0.88
TDP2-201ENST00000341060 CROCC2H7BZ55 1655 aa20.5■□□□□ 0.87
TDP2-201ENST00000341060 TROQ12816 1431 aaPredicted RBP20.5■□□□□ 0.87
TDP2-201ENST00000341060 CAMSAP2Q08AD1 1489 aa20.47■□□□□ 0.87
TDP2-201ENST00000341060 KIF14Q15058 1648 aa20.47■□□□□ 0.87
TDP2-201ENST00000341060 RPRD2Q5VT52 1461 aaKnown RBP20.47■□□□□ 0.87
TDP2-201ENST00000341060 PLB1Q6P1J6 1458 aa20.46■□□□□ 0.87
TDP2-201ENST00000341060 PRG4Q92954 1404 aaPredicted RBP20.45■□□□□ 0.86
TDP2-201ENST00000341060 ZNF644Q9H582 1327 aaPredicted RBP20.45■□□□□ 0.86
TDP2-201ENST00000341060 ANKRD30BQ9BXX2 1392 aa20.45■□□□□ 0.86
TDP2-201ENST00000341060 POLR1AO95602 1720 aaPredicted RBP20.44■□□□□ 0.86
TDP2-201ENST00000341060 TEX14Q8IWB6 1497 aa20.43■□□□□ 0.86
TDP2-201ENST00000341060 CARMIL2Q6F5E8 1435 aa20.43■□□□□ 0.86
TDP2-201ENST00000341060 GPATCH8Q9UKJ3 1502 aaKnown RBP20.42■□□□□ 0.86
TDP2-201ENST00000341060 HSPA5P11021 654 aaKnown RBP20.42■□□□□ 0.86
TDP2-201ENST00000341060 ADGRL2O95490 1459 aa20.4■□□□□ 0.86
TDP2-201ENST00000341060 CDC42BPAQ5VT25 1732 aa20.4■□□□□ 0.86
TDP2-201ENST00000341060 L3MBTL2Q969R5 705 aa20.4■□□□□ 0.86
TDP2-201ENST00000341060 WASHC2AQ641Q2 1341 aa20.4■□□□□ 0.86
TDP2-201ENST00000341060 EIF4G2P78344 907 aaKnown RBP eCLIP20.39■□□□□ 0.86
TDP2-201ENST00000341060 FOXD1Q16676 465 aa20.39■□□□□ 0.86
TDP2-201ENST00000341060 NCOA1Q15788 1441 aa20.38■□□□□ 0.85
TDP2-201ENST00000341060 ABCA8O94911 1581 aa20.38■□□□□ 0.85
TDP2-201ENST00000341060 PZPP20742 1482 aa20.37■□□□□ 0.85
TDP2-201ENST00000341060 CFDP1Q9UEE9 299 aaPredicted RBP20.36■□□□□ 0.85
TDP2-201ENST00000341060 CLASP1Q7Z460 1538 aa20.35■□□□□ 0.85
TDP2-201ENST00000341060 CNTLNQ9NXG0 1405 aa20.34■□□□□ 0.85
TDP2-201ENST00000341060 SLC4A1APQ9BWU0 796 aaKnown RBP20.34■□□□□ 0.85
TDP2-201ENST00000341060 SHROOM2Q13796 1616 aa20.33■□□□□ 0.84
TDP2-201ENST00000341060 ERCC6L2Q5T890 1561 aa20.32■□□□□ 0.84
TDP2-201ENST00000341060 OSCARQ8IYS5 282 aa20.31■□□□□ 0.84
TDP2-201ENST00000341060 ABCC10Q5T3U5 1492 aa20.29■□□□□ 0.84
TDP2-201ENST00000341060 SHANK2Q9UPX8 1470 aa20.29■□□□□ 0.84
TDP2-201ENST00000341060 SPATA31E1Q6ZUB1 1445 aa20.28■□□□□ 0.84
TDP2-201ENST00000341060 FKBP8Q14318 412 aa20.28■□□□□ 0.84
TDP2-201ENST00000341060 NBPF8Q3BBV2 869 aa20.28■□□□□ 0.84
TDP2-201ENST00000341060 CCDC7Q96M83 1385 aa20.28■□□□□ 0.84
TDP2-201ENST00000341060 ANKRD30AQ9BXX3 1397 aa20.28■□□□□ 0.84
TDP2-201ENST00000341060 PTPRGP23470 1445 aa20.28■□□□□ 0.84
TDP2-201ENST00000341060 MBD5Q9P267 1494 aa20.27■□□□□ 0.84
TDP2-201ENST00000341060 KIAA1107Q9UPP5 1409 aa20.27■□□□□ 0.84
TDP2-201ENST00000341060 ATP10BO94823 1461 aa20.26■□□□□ 0.83
TDP2-201ENST00000341060 ZNF777Q9ULD5 760 aaPredicted RBP20.24■□□□□ 0.83
TDP2-201ENST00000341060 ANKRD50Q9ULJ7 1429 aa20.23■□□□□ 0.83
TDP2-201ENST00000341060 NEFLP07196 543 aa20.23■□□□□ 0.83
TDP2-201ENST00000341060 PLEKHD1A6NEE1 506 aa20.23■□□□□ 0.83
TDP2-201ENST00000341060 C11orf95C9JLR9 678 aaPredicted RBP20.23■□□□□ 0.83
TDP2-201ENST00000341060 KDM5DQ9BY66 1539 aa20.21■□□□□ 0.83
TDP2-201ENST00000341060 ARHGEF5Q12774 1597 aa20.21■□□□□ 0.83
TDP2-201ENST00000341060 TSHZ2Q9NRE2 1034 aa20.21■□□□□ 0.83
TDP2-201ENST00000341060 C9orf84Q5VXU9 1444 aa20.21■□□□□ 0.83
TDP2-201ENST00000341060 BCANQ96GW7 911 aa20.19■□□□□ 0.82
TDP2-201ENST00000341060 CDC42BPBQ9Y5S2 1711 aa20.18■□□□□ 0.82
TDP2-201ENST00000341060 HNRNPUQ00839 825 aaKnown RBP eCLIP20.18■□□□□ 0.82
TDP2-201ENST00000341060 PREX2Q70Z35 1606 aa20.17■□□□□ 0.82
TDP2-201ENST00000341060 KIF7Q2M1P5 1343 aa20.17■□□□□ 0.82
TDP2-201ENST00000341060 KDM5CP41229 1560 aa20.16■□□□□ 0.82
TDP2-201ENST00000341060 PRKRIP1Q9H875 184 aaPredicted RBP20.16■□□□□ 0.82
TDP2-201ENST00000341060 PKD2Q13563 968 aa20.15■□□□□ 0.82
TDP2-201ENST00000341060 BCORL1Q5H9F3 1711 aa20.15■□□□□ 0.82
TDP2-201ENST00000341060 MYT1Q01538 1121 aa20.14■□□□□ 0.81
TDP2-201ENST00000341060 SAMD9LQ8IVG5 1584 aa20.13■□□□□ 0.81
TDP2-201ENST00000341060 ARHGEF12Q9NZN5 1544 aa20.13■□□□□ 0.81
TDP2-201ENST00000341060 UHRF1BP1Q6BDS2 1440 aa20.12■□□□□ 0.81
TDP2-201ENST00000341060 NUP155O75694 1391 aa20.11■□□□□ 0.81
TDP2-201ENST00000341060 USP47Q96K76 1375 aa20.1■□□□□ 0.81
TDP2-201ENST00000341060 RALGAPBQ86X10 1494 aa20.09■□□□□ 0.81
TDP2-201ENST00000341060 TSPY4P0CV99 314 aa20.09■□□□□ 0.81
TDP2-201ENST00000341060 TSPY10P0CW01 314 aa20.09■□□□□ 0.81
TDP2-201ENST00000341060 CCDC184Q52MB2 194 aa20.09■□□□□ 0.81
TDP2-201ENST00000341060 CCDC141Q6ZP82 1450 aa20.09■□□□□ 0.81
TDP2-201ENST00000341060 KIF15Q9NS87 1388 aa20.08■□□□□ 0.81
TDP2-201ENST00000341060 ARID4BQ4LE39 1312 aaPredicted RBP20.05■□□□□ 0.8
TDP2-201ENST00000341060 ABCC2Q92887 1545 aa20.05■□□□□ 0.8
TDP2-201ENST00000341060 MAST1Q9Y2H9 1570 aa20.04■□□□□ 0.8
TDP2-201ENST00000341060 MRS2Q9HD23 443 aa20.04■□□□□ 0.8
TDP2-201ENST00000341060 TTC37Q6PGP7 1564 aa20.04■□□□□ 0.8
TDP2-201ENST00000341060 DHX29Q7Z478 1369 aaKnown RBP20.03■□□□□ 0.8
TDP2-201ENST00000341060 HNRNPMP52272 730 aaKnown RBP eCLIP20.03■□□□□ 0.8
TDP2-201ENST00000341060 MYO5CQ9NQX4 1742 aa20.03■□□□□ 0.8
TDP2-201ENST00000341060 FAM135AQ9P2D6 1515 aa20.03■□□□□ 0.8
TDP2-201ENST00000341060 ZNF326Q5BKZ1 582 aaKnown RBP20.01■□□□□ 0.79
TDP2-201ENST00000341060 UNC13BO14795 1591 aa20.01■□□□□ 0.79
TDP2-201ENST00000341060 SYCP2Q9BX26 1530 aa20.01■□□□□ 0.79
TDP2-201ENST00000341060 RSPH4AQ5TD94 716 aa20■□□□□ 0.79
TDP2-201ENST00000341060 ZBED9Q6R2W3 1325 aa20■□□□□ 0.79
TDP2-201ENST00000341060 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20■□□□□ 0.79
TDP2-201ENST00000341060 FAM9BQ8IZU0 186 aa19.99■□□□□ 0.79
TDP2-201ENST00000341060 PLXNC1O60486 1568 aa19.98■□□□□ 0.79
TDP2-201ENST00000341060 ARHGAP5Q13017 1502 aa19.98■□□□□ 0.79
TDP2-201ENST00000341060 ROCK2O75116 1388 aaKnown RBP19.97■□□□□ 0.79
TDP2-201ENST00000341060 UHRF1BP1LA0JNW5 1464 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms