RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CHIC2Q9UKJ5 165 aa19.77■□□□□ 0.76
HMGB1-202ENST00000339872 ZNF777Q9ULD5 760 aaPredicted RBP19.75■□□□□ 0.75
HMGB1-202ENST00000339872 PREX2Q70Z35 1606 aa19.75■□□□□ 0.75
HMGB1-202ENST00000339872 ABCC5O15440 1437 aa19.74■□□□□ 0.75
HMGB1-202ENST00000339872 AKNAQ7Z591 1439 aa19.74■□□□□ 0.75
HMGB1-202ENST00000339872 TTC37Q6PGP7 1564 aa19.74■□□□□ 0.75
HMGB1-202ENST00000339872 RRP7BPQ9NSQ0 103 aa19.73■□□□□ 0.75
HMGB1-202ENST00000339872 MAPKBP1O60336 1514 aa19.72■□□□□ 0.75
HMGB1-202ENST00000339872 CROCC2H7BZ55 1655 aa19.72■□□□□ 0.75
HMGB1-202ENST00000339872 CDC42BPBQ9Y5S2 1711 aa19.72■□□□□ 0.75
HMGB1-202ENST00000339872 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.72■□□□□ 0.75
HMGB1-202ENST00000339872 MYO5CQ9NQX4 1742 aa19.7■□□□□ 0.74
HMGB1-202ENST00000339872 ADGBQ8N7X0 1667 aa19.69■□□□□ 0.74
HMGB1-202ENST00000339872 ROCK1Q13464 1354 aa19.68■□□□□ 0.74
HMGB1-202ENST00000339872 KDM6BO15054 1643 aa19.67■□□□□ 0.74
HMGB1-202ENST00000339872 KCNH8Q96L42 1107 aa19.67■□□□□ 0.74
HMGB1-202ENST00000339872 SAMD9LQ8IVG5 1584 aa19.66■□□□□ 0.74
HMGB1-202ENST00000339872 ARHGAP5Q13017 1502 aa19.65■□□□□ 0.74
HMGB1-202ENST00000339872 WDR7Q9Y4E6 1490 aa19.62■□□□□ 0.73
HMGB1-202ENST00000339872 ARHGEF5Q12774 1597 aa19.61■□□□□ 0.73
HMGB1-202ENST00000339872 ADGRL2O95490 1459 aa19.61■□□□□ 0.73
HMGB1-202ENST00000339872 SHANK2Q9UPX8 1470 aa19.6■□□□□ 0.73
HMGB1-202ENST00000339872 NCOA1Q15788 1441 aa19.58■□□□□ 0.73
HMGB1-202ENST00000339872 SYCP2Q9BX26 1530 aa19.58■□□□□ 0.72
HMGB1-202ENST00000339872 MBD5Q9P267 1494 aa19.57■□□□□ 0.72
HMGB1-202ENST00000339872 C9orf84Q5VXU9 1444 aa19.57■□□□□ 0.72
HMGB1-202ENST00000339872 HNRNPMP52272 730 aaKnown RBP eCLIP19.57■□□□□ 0.72
HMGB1-202ENST00000339872 CCDC141Q6ZP82 1450 aa19.56■□□□□ 0.72
HMGB1-202ENST00000339872 PLCH2O75038 1416 aa19.56■□□□□ 0.72
HMGB1-202ENST00000339872 ANKRD30AQ9BXX3 1397 aa19.56■□□□□ 0.72
HMGB1-202ENST00000339872 ASXL2Q76L83 1435 aa19.55■□□□□ 0.72
HMGB1-202ENST00000339872 TRIM52Q96A61 297 aa19.55■□□□□ 0.72
HMGB1-202ENST00000339872 TSPY4P0CV99 314 aa19.53■□□□□ 0.72
HMGB1-202ENST00000339872 TSPY10P0CW01 314 aa19.53■□□□□ 0.72
HMGB1-202ENST00000339872 PLEKHH2Q8IVE3 1493 aa19.53■□□□□ 0.72
HMGB1-202ENST00000339872 NPM1P06748 294 aaKnown RBP eCLIP19.52■□□□□ 0.72
HMGB1-202ENST00000339872 ABCA9Q8IUA7 1624 aa19.52■□□□□ 0.72
HMGB1-202ENST00000339872 SIN3AQ96ST3 1273 aa19.52■□□□□ 0.71
HMGB1-202ENST00000339872 ARAP3Q8WWN8 1544 aa19.5■□□□□ 0.71
HMGB1-202ENST00000339872 NEUROD1Q13562 356 aa19.5■□□□□ 0.71
HMGB1-202ENST00000339872 KIAA1107Q9UPP5 1409 aa19.49■□□□□ 0.71
HMGB1-202ENST00000339872 RSPH4AQ5TD94 716 aa19.49■□□□□ 0.71
HMGB1-202ENST00000339872 ACIN1Q9UKV3 1341 aaKnown RBP19.49■□□□□ 0.71
HMGB1-202ENST00000339872 ABCC1P33527 1531 aa19.49■□□□□ 0.71
HMGB1-202ENST00000339872 EFCAB2Q5VUJ9 269 aa19.48■□□□□ 0.71
HMGB1-202ENST00000339872 RIMBP3CA6NJZ7 1639 aa19.48■□□□□ 0.71
HMGB1-202ENST00000339872 RIMBP3BA6NNM3 1639 aa19.48■□□□□ 0.71
HMGB1-202ENST00000339872 RIMBP3Q9UFD9 1639 aa19.48■□□□□ 0.71
HMGB1-202ENST00000339872 DENND4BO75064 1496 aaPredicted RBP19.48■□□□□ 0.71
HMGB1-202ENST00000339872 MAST1Q9Y2H9 1570 aa19.48■□□□□ 0.71
HMGB1-202ENST00000339872 ANKRD50Q9ULJ7 1429 aa19.47■□□□□ 0.71
HMGB1-202ENST00000339872 ARHGEF12Q9NZN5 1544 aa19.47■□□□□ 0.71
HMGB1-202ENST00000339872 KIF15Q9NS87 1388 aa19.45■□□□□ 0.7
HMGB1-202ENST00000339872 MPHOSPH9Q99550 1183 aa19.45■□□□□ 0.7
HMGB1-202ENST00000339872 FANCAO15360 1455 aa19.42■□□□□ 0.7
HMGB1-202ENST00000339872 ZNF316A6NFI3 1004 aaPredicted RBP19.42■□□□□ 0.7
HMGB1-202ENST00000339872 PLXNC1O60486 1568 aa19.41■□□□□ 0.7
HMGB1-202ENST00000339872 PZPP20742 1482 aa19.4■□□□□ 0.7
HMGB1-202ENST00000339872 CYB5RLQ6IPT4 315 aa19.39■□□□□ 0.69
HMGB1-202ENST00000339872 TIMELESSQ9UNS1 1208 aa19.39■□□□□ 0.69
HMGB1-202ENST00000339872 TRAPPC8Q9Y2L5 1435 aa19.39■□□□□ 0.69
HMGB1-202ENST00000339872 SLC4A1APQ9BWU0 796 aaKnown RBP19.38■□□□□ 0.69
HMGB1-202ENST00000339872 TONSLQ96HA7 1378 aa19.37■□□□□ 0.69
HMGB1-202ENST00000339872 FOXD1Q16676 465 aa19.36■□□□□ 0.69
HMGB1-202ENST00000339872 ADGRL1O94910 1474 aa19.34■□□□□ 0.69
HMGB1-202ENST00000339872 KDM5DQ9BY66 1539 aa19.33■□□□□ 0.69
HMGB1-202ENST00000339872 CFAP74Q9C0B2 1584 aa19.32■□□□□ 0.68
HMGB1-202ENST00000339872 NUP155O75694 1391 aa19.32■□□□□ 0.68
HMGB1-202ENST00000339872 CD109Q6YHK3 1445 aa19.32■□□□□ 0.68
HMGB1-202ENST00000339872 DUOX2Q9NRD8 1548 aa19.32■□□□□ 0.68
HMGB1-202ENST00000339872 ZFYVE16Q7Z3T8 1539 aa19.32■□□□□ 0.68
HMGB1-202ENST00000339872 ANKRD30BQ9BXX2 1392 aa19.31■□□□□ 0.68
HMGB1-202ENST00000339872 AFAP1Q8N556 730 aa19.3■□□□□ 0.68
HMGB1-202ENST00000339872 SCAPERQ9BY12 1400 aa19.3■□□□□ 0.68
HMGB1-202ENST00000339872 SPAG9O60271 1321 aaKnown RBP19.3■□□□□ 0.68
HMGB1-202ENST00000339872 UNC13BO14795 1591 aa19.29■□□□□ 0.68
HMGB1-202ENST00000339872 INO80Q9ULG1 1556 aaPredicted RBP19.28■□□□□ 0.68
HMGB1-202ENST00000339872 RTEL1-TNFRSF6BF6WH68 1400 aa19.28■□□□□ 0.68
HMGB1-202ENST00000339872 PPP1R15AO75807 674 aaPredicted RBP19.28■□□□□ 0.68
HMGB1-202ENST00000339872 DIEXFQ68CQ4 756 aaKnown RBP19.28■□□□□ 0.68
HMGB1-202ENST00000339872 ERBINQ96RT1 1412 aa19.27■□□□□ 0.68
HMGB1-202ENST00000339872 ATP7AQ04656 1500 aa19.27■□□□□ 0.68
HMGB1-202ENST00000339872 PKD2Q13563 968 aa19.26■□□□□ 0.67
HMGB1-202ENST00000339872 RPRD2Q5VT52 1461 aaKnown RBP19.26■□□□□ 0.67
HMGB1-202ENST00000339872 FAM135AQ9P2D6 1515 aa19.25■□□□□ 0.67
HMGB1-202ENST00000339872 MAP3K4Q9Y6R4 1608 aa19.23■□□□□ 0.67
HMGB1-202ENST00000339872 ZNF518AQ6AHZ1 1483 aa19.22■□□□□ 0.67
HMGB1-202ENST00000339872 IQGAP3Q86VI3 1631 aa19.22■□□□□ 0.67
HMGB1-202ENST00000339872 GLI2P10070 1586 aa19.2■□□□□ 0.66
HMGB1-202ENST00000339872 MAGI2Q86UL8 1455 aa19.2■□□□□ 0.66
HMGB1-202ENST00000339872 MYT1LQ9UL68 1186 aa19.2■□□□□ 0.66
HMGB1-202ENST00000339872 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.19■□□□□ 0.662e-7■■□□□ 14.5
HMGB1-202ENST00000339872 KIDINS220Q9ULH0 1771 aa19.19■□□□□ 0.66
HMGB1-202ENST00000339872 NEO1Q92859 1461 aa19.19■□□□□ 0.66
HMGB1-202ENST00000339872 POGZQ7Z3K3 1410 aa19.18■□□□□ 0.66
HMGB1-202ENST00000339872 TEX14Q8IWB6 1497 aa19.18■□□□□ 0.66
HMGB1-202ENST00000339872 DIP2BQ9P265 1576 aa19.18■□□□□ 0.66
HMGB1-202ENST00000339872 KDM5CP41229 1560 aa19.17■□□□□ 0.66
HMGB1-202ENST00000339872 L3MBTL2Q969R5 705 aa19.16■□□□□ 0.66
HMGB1-202ENST00000339872 DEPDC5O75140 1603 aa19.14■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms