RNA–Protein interactions for RNA: ENST00000336904.7

SNCA-201, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 3,041 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-201ENST00000336904 ABCC5O15440 1437 aa12.55□□□□□ -0.4
SNCA-201ENST00000336904 DAPK1P53355 1430 aa12.55□□□□□ -0.4
SNCA-201ENST00000336904 MAGI1Q96QZ7 1491 aaPredicted RBP12.54□□□□□ -0.4
SNCA-201ENST00000336904 BCANQ96GW7 911 aa12.54□□□□□ -0.4
SNCA-201ENST00000336904 TCOF1Q13428 1488 aaKnown RBP12.53□□□□□ -0.4
SNCA-201ENST00000336904 POLR3GLQ9BT43 218 aa12.53□□□□□ -0.4
SNCA-201ENST00000336904 HSPA5P11021 654 aaKnown RBP12.52□□□□□ -0.4
SNCA-201ENST00000336904 HNRNPMP52272 730 aaKnown RBP eCLIP12.52□□□□□ -0.41
SNCA-201ENST00000336904 PLEKHD1A6NEE1 506 aa12.51□□□□□ -0.41
SNCA-201ENST00000336904 CARMIL2Q6F5E8 1435 aa12.5□□□□□ -0.41
SNCA-201ENST00000336904 MIA2Q96PC5 1412 aa12.5□□□□□ -0.41
SNCA-201ENST00000336904 TROQ12816 1431 aaPredicted RBP12.5□□□□□ -0.41
SNCA-201ENST00000336904 CAMSAP2Q08AD1 1489 aa12.49□□□□□ -0.41
SNCA-201ENST00000336904 SENP3-EIF4A1A0A087X0R7 540 aa12.49□□□□□ -0.41
SNCA-201ENST00000336904 NBPF8Q3BBV2 869 aa12.49□□□□□ -0.41
SNCA-201ENST00000336904 ANP32CO43423 234 aa12.49□□□□□ -0.41
SNCA-201ENST00000336904 KDM5BQ9UGL1 1544 aa12.48□□□□□ -0.41
SNCA-201ENST00000336904 C11orf95C9JLR9 678 aaPredicted RBP12.48□□□□□ -0.41
SNCA-201ENST00000336904 GPATCH8Q9UKJ3 1502 aaKnown RBP12.48□□□□□ -0.41
SNCA-201ENST00000336904 GCC2Q8IWJ2 1684 aa12.48□□□□□ -0.41
SNCA-201ENST00000336904 TIMELESSQ9UNS1 1208 aa12.47□□□□□ -0.41
SNCA-201ENST00000336904 NUP160Q12769 1436 aa12.47□□□□□ -0.41
SNCA-201ENST00000336904 WASHC2AQ641Q2 1341 aa12.46□□□□□ -0.41
SNCA-201ENST00000336904 PKD2Q13563 968 aa12.46□□□□□ -0.41
SNCA-201ENST00000336904 ATP10BO94823 1461 aa12.45□□□□□ -0.42
SNCA-201ENST00000336904 SUPT16HQ9Y5B9 1047 aaKnown RBP12.45□□□□□ -0.42
SNCA-201ENST00000336904 KDM2AQ9Y2K7 1162 aa12.44□□□□□ -0.42
SNCA-201ENST00000336904 PTPRGP23470 1445 aa12.44□□□□□ -0.42
SNCA-201ENST00000336904 DNMT1P26358 1616 aaKnown RBP12.44□□□□□ -0.42
SNCA-201ENST00000336904 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.43□□□□□ -0.42
SNCA-201ENST00000336904 ERCC6L2Q5T890 1561 aa12.43□□□□□ -0.42
SNCA-201ENST00000336904 CCDC184Q52MB2 194 aa12.43□□□□□ -0.42
SNCA-201ENST00000336904 AKNAQ7Z591 1439 aa12.42□□□□□ -0.42
SNCA-201ENST00000336904 EIF4G2P78344 907 aaKnown RBP eCLIP12.42□□□□□ -0.42
SNCA-201ENST00000336904 ANKRD30BQ9BXX2 1392 aa12.42□□□□□ -0.42
SNCA-201ENST00000336904 NCOA1Q15788 1441 aa12.41□□□□□ -0.42
SNCA-201ENST00000336904 CHD1O14646 1710 aa12.4□□□□□ -0.42
SNCA-201ENST00000336904 NUP155O75694 1391 aa12.39□□□□□ -0.43
SNCA-201ENST00000336904 TSPY4P0CV99 314 aa12.39□□□□□ -0.43
SNCA-201ENST00000336904 TSPY10P0CW01 314 aa12.39□□□□□ -0.43
SNCA-201ENST00000336904 PZPP20742 1482 aa12.38□□□□□ -0.43
SNCA-201ENST00000336904 FKBP8Q14318 412 aa12.38□□□□□ -0.43
SNCA-201ENST00000336904 ROCK1Q13464 1354 aa12.38□□□□□ -0.43
SNCA-201ENST00000336904 ABCA8O94911 1581 aa12.37□□□□□ -0.43
SNCA-201ENST00000336904 IRX6P78412 446 aaPredicted RBP12.37□□□□□ -0.43
SNCA-201ENST00000336904 ANKRD50Q9ULJ7 1429 aa12.37□□□□□ -0.43
SNCA-201ENST00000336904 HNRNPUQ00839 825 aaKnown RBP eCLIP12.37□□□□□ -0.43
SNCA-201ENST00000336904 RGL3Q3MIN7 710 aa12.37□□□□□ -0.43
SNCA-201ENST00000336904 ANKRD30AQ9BXX3 1397 aa12.37□□□□□ -0.43
SNCA-201ENST00000336904 CDC42BPAQ5VT25 1732 aa12.36□□□□□ -0.43
SNCA-201ENST00000336904 C9orf84Q5VXU9 1444 aa12.36□□□□□ -0.43
SNCA-201ENST00000336904 FAM9BQ8IZU0 186 aa12.35□□□□□ -0.43
SNCA-201ENST00000336904 RPRD2Q5VT52 1461 aaKnown RBP12.35□□□□□ -0.43
SNCA-201ENST00000336904 ITSN2Q9NZM3 1697 aa12.35□□□□□ -0.43
SNCA-201ENST00000336904 ABCC10Q5T3U5 1492 aa12.34□□□□□ -0.43
SNCA-201ENST00000336904 TEX14Q8IWB6 1497 aa12.34□□□□□ -0.43
SNCA-201ENST00000336904 KIF15Q9NS87 1388 aa12.34□□□□□ -0.43
SNCA-201ENST00000336904 DCAF11Q8TEB1 546 aa12.32□□□□□ -0.44
SNCA-201ENST00000336904 KIF7Q2M1P5 1343 aa12.32□□□□□ -0.44
SNCA-201ENST00000336904 CCDC7Q96M83 1385 aa12.3□□□□□ -0.44
SNCA-201ENST00000336904 ADCY10Q96PN6 1610 aa12.3□□□□□ -0.44
SNCA-201ENST00000336904 KIAA1107Q9UPP5 1409 aa12.3□□□□□ -0.44
SNCA-201ENST00000336904 ARHGAP5Q13017 1502 aa12.29□□□□□ -0.44
SNCA-201ENST00000336904 CCER2I3L3R5 266 aa12.29□□□□□ -0.44
SNCA-201ENST00000336904 MYT1LQ9UL68 1186 aa12.29□□□□□ -0.44
SNCA-201ENST00000336904 ADGBQ8N7X0 1667 aa12.29□□□□□ -0.44
SNCA-201ENST00000336904 SYCP2Q9BX26 1530 aa12.29□□□□□ -0.44
SNCA-201ENST00000336904 TTC37Q6PGP7 1564 aa12.29□□□□□ -0.44
SNCA-201ENST00000336904 CROCC2H7BZ55 1655 aa12.28□□□□□ -0.44
SNCA-201ENST00000336904 MRS2Q9HD23 443 aa12.28□□□□□ -0.44
SNCA-201ENST00000336904 SAMD9LQ8IVG5 1584 aa12.28□□□□□ -0.44
SNCA-201ENST00000336904 CARD11Q9BXL7 1154 aa12.27□□□□□ -0.45
SNCA-201ENST00000336904 USP47Q96K76 1375 aa12.26□□□□□ -0.45
SNCA-201ENST00000336904 CDC42BPBQ9Y5S2 1711 aa12.26□□□□□ -0.45
SNCA-201ENST00000336904 MBD5Q9P267 1494 aa12.26□□□□□ -0.45
SNCA-201ENST00000336904 CNTLNQ9NXG0 1405 aa12.26□□□□□ -0.45
SNCA-201ENST00000336904 ADGRL2O95490 1459 aa12.25□□□□□ -0.45
SNCA-201ENST00000336904 PRKRIP1Q9H875 184 aaPredicted RBP12.25□□□□□ -0.45
SNCA-201ENST00000336904 AFAP1Q8N556 730 aa12.25□□□□□ -0.45
SNCA-201ENST00000336904 ST20-MTHFSA0A0A6YYL1 179 aa12.24□□□□□ -0.45
SNCA-201ENST00000336904 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.24□□□□□ -0.45
SNCA-201ENST00000336904 NBPF1Q3BBV0 1214 aa12.23□□□□□ -0.45
SNCA-201ENST00000336904 PELP1Q8IZL8 1130 aaKnown RBP12.23□□□□□ -0.45
SNCA-201ENST00000336904 CCDC141Q6ZP82 1450 aa12.23□□□□□ -0.45
SNCA-201ENST00000336904 PLEKHH2Q8IVE3 1493 aa12.22□□□□□ -0.45
SNCA-201ENST00000336904 NEFLP07196 543 aa12.21□□□□□ -0.45
SNCA-201ENST00000336904 ARHGEF12Q9NZN5 1544 aa12.21□□□□□ -0.45
SNCA-201ENST00000336904 SPATA31E1Q6ZUB1 1445 aa12.21□□□□□ -0.45
SNCA-201ENST00000336904 SENP3Q9H4L4 574 aaPredicted RBP12.21□□□□□ -0.45
SNCA-201ENST00000336904 BCORL1Q5H9F3 1711 aa12.21□□□□□ -0.45
SNCA-201ENST00000336904 PREX2Q70Z35 1606 aa12.2□□□□□ -0.46
SNCA-201ENST00000336904 SALL2Q9Y467 1007 aaPredicted RBP12.19□□□□□ -0.46
SNCA-201ENST00000336904 ABCC2Q92887 1545 aa12.19□□□□□ -0.46
SNCA-201ENST00000336904 FAM135AQ9P2D6 1515 aa12.18□□□□□ -0.46
SNCA-201ENST00000336904 TRAPPC8Q9Y2L5 1435 aa12.18□□□□□ -0.46
SNCA-201ENST00000336904 ROCK2O75116 1388 aaKnown RBP12.17□□□□□ -0.46
SNCA-201ENST00000336904 SHANK2Q9UPX8 1470 aa12.17□□□□□ -0.46
SNCA-201ENST00000336904 SHROOM2Q13796 1616 aa12.16□□□□□ -0.46
SNCA-201ENST00000336904 TSHZ2Q9NRE2 1034 aa12.16□□□□□ -0.46
SNCA-201ENST00000336904 CCDC144AA2RUR9 1427 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms