RNA–Protein interactions for RNA: ENST00000336648.8

HLCS-201, Transcript of holocarboxylase synthetase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HLCS, Length 6,010 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLCS-201ENST00000336648 KIAA1211Q6ZU35 1233 aa16.54■□□□□ 0.24
HLCS-201ENST00000336648 NOC3LQ8WTT2 800 aaKnown RBP16.54■□□□□ 0.24
HLCS-201ENST00000336648 SYAP1Q96A49 352 aaPredicted RBP16.54■□□□□ 0.24
HLCS-201ENST00000336648 GOLGA6L1Q8N7Z2 621 aa16.53■□□□□ 0.24
HLCS-201ENST00000336648 RTF1Q92541 710 aaKnown RBP16.53■□□□□ 0.24
HLCS-201ENST00000336648 KTN1Q86UP2 1357 aaKnown RBP16.53■□□□□ 0.24
HLCS-201ENST00000336648 HDAC5Q9UQL6 1122 aa16.52■□□□□ 0.24
HLCS-201ENST00000336648 SENP3Q9H4L4 574 aaPredicted RBP16.52■□□□□ 0.23
HLCS-201ENST00000336648 B4GALNT3Q6L9W6 998 aa16.51■□□□□ 0.23
HLCS-201ENST00000336648 RWDD1Q9H446 243 aaPredicted RBP16.51■□□□□ 0.23
HLCS-201ENST00000336648 SETQ01105 290 aaPredicted RBP16.51■□□□□ 0.23
HLCS-201ENST00000336648 CCDC34Q96HJ3 373 aa16.51■□□□□ 0.23
HLCS-201ENST00000336648 GNL2Q13823 731 aaKnown RBP16.51■□□□□ 0.23
HLCS-201ENST00000336648 SIN3AQ96ST3 1273 aa16.51■□□□□ 0.23
HLCS-201ENST00000336648 DCAF11Q8TEB1 546 aa16.5■□□□□ 0.23
HLCS-201ENST00000336648 HDGFL2Q7Z4V5 671 aaPredicted RBP16.5■□□□□ 0.23
HLCS-201ENST00000336648 TCERG1O14776 1098 aaKnown RBP16.49■□□□□ 0.23
HLCS-201ENST00000336648 ARID3AQ99856 593 aa16.49■□□□□ 0.23
HLCS-201ENST00000336648 RALBP1Q15311 655 aa16.49■□□□□ 0.23
HLCS-201ENST00000336648 USP35Q9P2H5 1018 aa16.49■□□□□ 0.23
HLCS-201ENST00000336648 TPM4P67936 248 aa16.48■□□□□ 0.23
HLCS-201ENST00000336648 SRPK2P78362 688 aaKnown RBP16.48■□□□□ 0.23
HLCS-201ENST00000336648 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.47■□□□□ 0.23
HLCS-201ENST00000336648 TAOK2Q9UL54 1235 aa16.47■□□□□ 0.23
HLCS-201ENST00000336648 CLSTN1O94985 981 aa16.46■□□□□ 0.23
HLCS-201ENST00000336648 CSPP1Q1MSJ5 1256 aa16.46■□□□□ 0.23
HLCS-201ENST00000336648 PMFBP1Q8TBY8 1022 aa16.45■□□□□ 0.22
HLCS-201ENST00000336648 SETD5Q9C0A6 1442 aa16.45■□□□□ 0.22
HLCS-201ENST00000336648 NCBP3Q53F19 620 aaKnown RBP16.44■□□□□ 0.22
HLCS-201ENST00000336648 A0A0U1RQG5 324 aaPredicted RBP16.43■□□□□ 0.22
HLCS-201ENST00000336648 SENP3-EIF4A1A0A087X0R7 540 aa16.42■□□□□ 0.22
HLCS-201ENST00000336648 NACADO15069 1562 aa16.42■□□□□ 0.22
HLCS-201ENST00000336648 GPATCH3Q96I76 525 aa16.41■□□□□ 0.22
HLCS-201ENST00000336648 EIF3AQ14152 1382 aaKnown RBP16.41■□□□□ 0.22
HLCS-201ENST00000336648 RCAN3Q9UKA8 241 aa16.4■□□□□ 0.22
HLCS-201ENST00000336648 ARHGAP35Q9NRY4 1499 aa16.4■□□□□ 0.22
HLCS-201ENST00000336648 HMMRO75330 724 aa16.4■□□□□ 0.22
HLCS-201ENST00000336648 HSPA5P11021 654 aaKnown RBP16.39■□□□□ 0.21
HLCS-201ENST00000336648 RBM19Q9Y4C8 960 aaKnown RBP16.38■□□□□ 0.21
HLCS-201ENST00000336648 CARMIL1Q5VZK9 1371 aa16.38■□□□□ 0.21
HLCS-201ENST00000336648 PDE3BQ13370 1112 aa16.37■□□□□ 0.21
HLCS-201ENST00000336648 HSP90AA2PQ14568 343 aaPredicted RBP16.37■□□□□ 0.21
HLCS-201ENST00000336648 SPAG9O60271 1321 aaKnown RBP16.36■□□□□ 0.21
HLCS-201ENST00000336648 MYO15BQ96JP2 1530 aa16.36■□□□□ 0.21
HLCS-201ENST00000336648 STK31Q9BXU1 1019 aa16.36■□□□□ 0.21
HLCS-201ENST00000336648 ERCC6Q03468 1493 aa16.36■□□□□ 0.21
HLCS-201ENST00000336648 CHMP4CQ96CF2 233 aa16.36■□□□□ 0.21
HLCS-201ENST00000336648 ITPRIPQ8IWB1 547 aa16.35■□□□□ 0.21
HLCS-201ENST00000336648 KIF3AQ9Y496 699 aa16.35■□□□□ 0.21
HLCS-201ENST00000336648 PHLDB1Q86UU1 1377 aa16.35■□□□□ 0.21
HLCS-201ENST00000336648 PHF14O94880 888 aa16.35■□□□□ 0.21
HLCS-201ENST00000336648 ISY1Q9ULR0 285 aaKnown RBP16.34■□□□□ 0.21
HLCS-201ENST00000336648 GOLGA6L3A6NEY3 463 aa16.34■□□□□ 0.21
HLCS-201ENST00000336648 LMOD3Q0VAK6 560 aa16.34■□□□□ 0.21
HLCS-201ENST00000336648 ROCK2O75116 1388 aaKnown RBP16.33■□□□□ 0.21
HLCS-201ENST00000336648 U2AF1L5P0DN76 240 aaPredicted RBP16.33■□□□□ 0.21
HLCS-201ENST00000336648 U2AF1Q01081 240 aaKnown RBP eCLIP16.33■□□□□ 0.21
HLCS-201ENST00000336648 BAZ1AQ9NRL2 1556 aaPredicted RBP16.33■□□□□ 0.2
HLCS-201ENST00000336648 TMX4Q9H1E5 349 aaPredicted RBP16.32■□□□□ 0.2
HLCS-201ENST00000336648 CARMIL2Q6F5E8 1435 aa16.32■□□□□ 0.2
HLCS-201ENST00000336648 PKD2Q13563 968 aa16.32■□□□□ 0.2
HLCS-201ENST00000336648 SPRYD3Q8NCJ5 442 aa16.32■□□□□ 0.2
HLCS-201ENST00000336648 RSPH6AQ9H0K4 717 aa16.32■□□□□ 0.2
HLCS-201ENST00000336648 VPS8Q8N3P4 1428 aa16.31■□□□□ 0.2
HLCS-201ENST00000336648 PRM3Q9NNZ6 103 aa16.31■□□□□ 0.2
HLCS-201ENST00000336648 ANKRD30AQ9BXX3 1397 aa16.29■□□□□ 0.2
HLCS-201ENST00000336648 TERF2IPQ9NYB0 399 aa16.29■□□□□ 0.2
HLCS-201ENST00000336648 GORABQ5T7V8 394 aa16.29■□□□□ 0.2
HLCS-201ENST00000336648 EIF4G1Q04637 1599 aaKnown RBP16.29■□□□□ 0.2
HLCS-201ENST00000336648 VSIG10Q8N0Z9 540 aa16.28■□□□□ 0.2
HLCS-201ENST00000336648 CUX2O14529 1486 aa16.28■□□□□ 0.2
HLCS-201ENST00000336648 IPO9Q96P70 1041 aaKnown RBP16.27■□□□□ 0.19
HLCS-201ENST00000336648 ST18O60284 1047 aa16.27■□□□□ 0.19
HLCS-201ENST00000336648 FMN1Q68DA7 1419 aa16.26■□□□□ 0.19
HLCS-201ENST00000336648 SOX12O15370 315 aa16.26■□□□□ 0.19
HLCS-201ENST00000336648 APBB1O00213 710 aa16.26■□□□□ 0.19
HLCS-201ENST00000336648 SMC4Q9NTJ3 1288 aa16.25■□□□□ 0.19
HLCS-201ENST00000336648 GZF1Q9H116 711 aaPredicted RBP16.25■□□□□ 0.19
HLCS-201ENST00000336648 DDX11L8A8MPP1 907 aa16.25■□□□□ 0.19
HLCS-201ENST00000336648 TPM3P06753 285 aa16.25■□□□□ 0.19
HLCS-201ENST00000336648 RSPH4AQ5TD94 716 aa16.25■□□□□ 0.19
HLCS-201ENST00000336648 EFCAB2Q5VUJ9 269 aa16.25■□□□□ 0.19
HLCS-201ENST00000336648 NLRP13Q86W25 1043 aa16.25■□□□□ 0.19
HLCS-201ENST00000336648 CSB-PGBD3P0DP91 1061 aa16.24■□□□□ 0.19
HLCS-201ENST00000336648 HSP90B1P14625 803 aaKnown RBP16.24■□□□□ 0.19
HLCS-201ENST00000336648 SLKQ9H2G2 1235 aaPredicted RBP16.24■□□□□ 0.19
HLCS-201ENST00000336648 TAF7LQ5H9L4 462 aa16.23■□□□□ 0.19
HLCS-201ENST00000336648 CENPJQ9HC77 1338 aaPredicted RBP16.23■□□□□ 0.19
HLCS-201ENST00000336648 MPHOSPH9Q99550 1183 aa16.23■□□□□ 0.19
HLCS-201ENST00000336648 MFAP1P55081 439 aaKnown RBP16.22■□□□□ 0.19
HLCS-201ENST00000336648 KIF16BQ96L93 1317 aa16.22■□□□□ 0.19
HLCS-201ENST00000336648 SAFB2Q14151 953 aaKnown RBP eCLIP16.22■□□□□ 0.196e-6■■■□□ 18.5
HLCS-201ENST00000336648 NUP155O75694 1391 aa16.22■□□□□ 0.19
HLCS-201ENST00000336648 ATP6V1DQ9Y5K8 247 aa16.22■□□□□ 0.19
HLCS-201ENST00000336648 TRIM6-TRIM34B2RNG4 842 aa16.21■□□□□ 0.19
HLCS-201ENST00000336648 GGT6Q6P531 493 aa16.21■□□□□ 0.19
HLCS-201ENST00000336648 CEP89Q96ST8 783 aa16.21■□□□□ 0.19
HLCS-201ENST00000336648 STK26Q9P289 416 aa16.21■□□□□ 0.19
HLCS-201ENST00000336648 ZNF771Q7L3S4 317 aaPredicted RBP16.21■□□□□ 0.19
HLCS-201ENST00000336648 GPS2Q13227 327 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms