RNA–Protein interactions for RNA: ENST00000336219.3

CDCA4-201, Transcript of cell division cycle associated 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDCA4, Length 2,513 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA4-201ENST00000336219 ROCK1Q13464 1354 aa27.71■■■□□ 2.03
CDCA4-201ENST00000336219 WASHC2AQ641Q2 1341 aa27.7■■■□□ 2.03
CDCA4-201ENST00000336219 NUP153P49790 1475 aaKnown RBP27.7■■■□□ 2.02
CDCA4-201ENST00000336219 RAPGEF6Q8TEU7 1601 aa27.69■■■□□ 2.02
CDCA4-201ENST00000336219 MSH5O43196 834 aa27.68■■■□□ 2.02
CDCA4-201ENST00000336219 ABCC5O15440 1437 aa27.67■■■□□ 2.02
CDCA4-201ENST00000336219 EIF4G2P78344 907 aaKnown RBP eCLIP27.66■■■□□ 2.02
CDCA4-201ENST00000336219 L3MBTL2Q969R5 705 aa27.65■■■□□ 2.02
CDCA4-201ENST00000336219 GRIN2AQ12879 1464 aa27.64■■■□□ 2.02
CDCA4-201ENST00000336219 FOXD1Q16676 465 aa27.63■■■□□ 2.01
CDCA4-201ENST00000336219 BCL11AQ9H165 835 aa27.62■■■□□ 2.01
CDCA4-201ENST00000336219 ANKRD30BQ9BXX2 1392 aa27.62■■■□□ 2.01
CDCA4-201ENST00000336219 EIF4G3O43432 1585 aaKnown RBP27.62■■■□□ 2.01
CDCA4-201ENST00000336219 RPRD2Q5VT52 1461 aaKnown RBP27.62■■■□□ 2.01
CDCA4-201ENST00000336219 ZNF644Q9H582 1327 aaPredicted RBP27.59■■■□□ 2.01
CDCA4-201ENST00000336219 CCDC184Q52MB2 194 aa27.59■■■□□ 2.01
CDCA4-201ENST00000336219 CDK11AQ9UQ88 783 aaPredicted RBP27.58■■■□□ 2
CDCA4-201ENST00000336219 TEX14Q8IWB6 1497 aa27.57■■■□□ 2
CDCA4-201ENST00000336219 CNTLNQ9NXG0 1405 aa27.57■■■□□ 2
CDCA4-201ENST00000336219 NCOA1Q15788 1441 aa27.55■■■□□ 2
CDCA4-201ENST00000336219 ITSN2Q9NZM3 1697 aa27.52■■■□□ 2
CDCA4-201ENST00000336219 TROQ12816 1431 aaPredicted RBP27.52■■■□□ 2
CDCA4-201ENST00000336219 CCDC7Q96M83 1385 aa27.5■■□□□ 1.99
CDCA4-201ENST00000336219 PRG4Q92954 1404 aaPredicted RBP27.5■■□□□ 1.99
CDCA4-201ENST00000336219 CAMSAP2Q08AD1 1489 aa27.5■■□□□ 1.99
CDCA4-201ENST00000336219 NBPF8Q3BBV2 869 aa27.49■■□□□ 1.99
CDCA4-201ENST00000336219 SLC4A1APQ9BWU0 796 aaKnown RBP27.49■■□□□ 1.99
CDCA4-201ENST00000336219 ADGBQ8N7X0 1667 aa27.49■■□□□ 1.99
CDCA4-201ENST00000336219 C11orf95C9JLR9 678 aaPredicted RBP27.49■■□□□ 1.99
CDCA4-201ENST00000336219 POLR1AO95602 1720 aaPredicted RBP27.48■■□□□ 1.99
CDCA4-201ENST00000336219 MAGI1Q96QZ7 1491 aaPredicted RBP27.48■■□□□ 1.99
CDCA4-201ENST00000336219 ADCY10Q96PN6 1610 aa27.47■■□□□ 1.99
CDCA4-201ENST00000336219 CEP170Q5SW79 1584 aa27.47■■□□□ 1.99
CDCA4-201ENST00000336219 PZPP20742 1482 aa27.46■■□□□ 1.99
CDCA4-201ENST00000336219 PLB1Q6P1J6 1458 aa27.45■■□□□ 1.98
CDCA4-201ENST00000336219 GPATCH8Q9UKJ3 1502 aaKnown RBP27.44■■□□□ 1.98
CDCA4-201ENST00000336219 SPATA31E1Q6ZUB1 1445 aa27.44■■□□□ 1.98
CDCA4-201ENST00000336219 KIF14Q15058 1648 aa27.44■■□□□ 1.98
CDCA4-201ENST00000336219 CROCC2H7BZ55 1655 aa27.44■■□□□ 1.98
CDCA4-201ENST00000336219 CFDP1Q9UEE9 299 aaPredicted RBP27.43■■□□□ 1.98
CDCA4-201ENST00000336219 FAM9BQ8IZU0 186 aa27.42■■□□□ 1.98
CDCA4-201ENST00000336219 SYNJ2O15056 1496 aa27.42■■□□□ 1.98
CDCA4-201ENST00000336219 ADGRL2O95490 1459 aa27.4■■□□□ 1.98
CDCA4-201ENST00000336219 PRKRIP1Q9H875 184 aaPredicted RBP27.4■■□□□ 1.98
CDCA4-201ENST00000336219 FANCIQ9NVI1 1328 aa27.39■■□□□ 1.98
CDCA4-201ENST00000336219 CHMP7Q8WUX9 453 aaPredicted RBP27.38■■□□□ 1.97
CDCA4-201ENST00000336219 KIF7Q2M1P5 1343 aa27.35■■□□□ 1.97
CDCA4-201ENST00000336219 MBD5Q9P267 1494 aa27.34■■□□□ 1.97
CDCA4-201ENST00000336219 CARMIL2Q6F5E8 1435 aa27.33■■□□□ 1.97
CDCA4-201ENST00000336219 PPP4R2Q9NY27 417 aa27.33■■□□□ 1.97
CDCA4-201ENST00000336219 KIAA1107Q9UPP5 1409 aa27.33■■□□□ 1.97
CDCA4-201ENST00000336219 ERCC6Q03468 1493 aa27.33■■□□□ 1.97
CDCA4-201ENST00000336219 B4GALNT3Q6L9W6 998 aa27.33■■□□□ 1.97
CDCA4-201ENST00000336219 MRS2Q9HD23 443 aa27.33■■□□□ 1.97
CDCA4-201ENST00000336219 NUP160Q12769 1436 aa27.31■■□□□ 1.96
CDCA4-201ENST00000336219 ZNF777Q9ULD5 760 aaPredicted RBP27.31■■□□□ 1.96
CDCA4-201ENST00000336219 ANKRD30AQ9BXX3 1397 aa27.29■■□□□ 1.96
CDCA4-201ENST00000336219 ERICH6Q7L0X2 663 aa27.29■■□□□ 1.96
CDCA4-201ENST00000336219 CDC42BPAQ5VT25 1732 aa27.29■■□□□ 1.96
CDCA4-201ENST00000336219 JPH4Q96JJ6 628 aa27.27■■□□□ 1.96
CDCA4-201ENST00000336219 FBLN2P98095 1184 aa27.25■■□□□ 1.95
CDCA4-201ENST00000336219 CNGB1Q14028 1251 aaPredicted RBP27.25■■□□□ 1.95
CDCA4-201ENST00000336219 ABCA8O94911 1581 aa27.24■■□□□ 1.95
CDCA4-201ENST00000336219 ANKRD50Q9ULJ7 1429 aa27.24■■□□□ 1.95
CDCA4-201ENST00000336219 PKD2Q13563 968 aa27.23■■□□□ 1.95
CDCA4-201ENST00000336219 ERICH6BQ5W0A0 696 aa27.23■■□□□ 1.95
CDCA4-201ENST00000336219 BCORL1Q5H9F3 1711 aa27.22■■□□□ 1.95
CDCA4-201ENST00000336219 ZBED9Q6R2W3 1325 aa27.22■■□□□ 1.95
CDCA4-201ENST00000336219 ABCC10Q5T3U5 1492 aa27.21■■□□□ 1.95
CDCA4-201ENST00000336219 SHANK2Q9UPX8 1470 aa27.21■■□□□ 1.95
CDCA4-201ENST00000336219 USP47Q96K76 1375 aa27.19■■□□□ 1.94
CDCA4-201ENST00000336219 KDM5CP41229 1560 aa27.18■■□□□ 1.94
CDCA4-201ENST00000336219 PLEKHD1A6NEE1 506 aa27.18■■□□□ 1.94
CDCA4-201ENST00000336219 ATP10BO94823 1461 aa27.18■■□□□ 1.94
CDCA4-201ENST00000336219 C9orf84Q5VXU9 1444 aa27.17■■□□□ 1.94
CDCA4-201ENST00000336219 DHX29Q7Z478 1369 aaKnown RBP27.15■■□□□ 1.94
CDCA4-201ENST00000336219 SENP3-EIF4A1A0A087X0R7 540 aa27.15■■□□□ 1.94
CDCA4-201ENST00000336219 UHRF1BP1Q6BDS2 1440 aa27.14■■□□□ 1.93
CDCA4-201ENST00000336219 KDM5DQ9BY66 1539 aa27.13■■□□□ 1.93
CDCA4-201ENST00000336219 ZNF326Q5BKZ1 582 aaKnown RBP27.13■■□□□ 1.93
CDCA4-201ENST00000336219 NUP155O75694 1391 aa27.12■■□□□ 1.93
CDCA4-201ENST00000336219 RALGAPBQ86X10 1494 aa27.11■■□□□ 1.93
CDCA4-201ENST00000336219 ARID4BQ4LE39 1312 aaPredicted RBP27.1■■□□□ 1.93
CDCA4-201ENST00000336219 ARHGEF12Q9NZN5 1544 aa27.1■■□□□ 1.93
CDCA4-201ENST00000336219 POLR3GLQ9BT43 218 aa27.09■■□□□ 1.93
CDCA4-201ENST00000336219 ARHGEF5Q12774 1597 aa27.07■■□□□ 1.92
CDCA4-201ENST00000336219 TSPY4P0CV99 314 aa27.05■■□□□ 1.92
CDCA4-201ENST00000336219 TSPY10P0CW01 314 aa27.05■■□□□ 1.92
CDCA4-201ENST00000336219 PTPRGP23470 1445 aa27.04■■□□□ 1.92
CDCA4-201ENST00000336219 KIF15Q9NS87 1388 aa27.03■■□□□ 1.92
CDCA4-201ENST00000336219 ROCK2O75116 1388 aaKnown RBP27■■□□□ 1.91
CDCA4-201ENST00000336219 CDC42BPBQ9Y5S2 1711 aa26.99■■□□□ 1.91
CDCA4-201ENST00000336219 HNRNPMP52272 730 aaKnown RBP eCLIP26.98■■□□□ 1.911e-7■■■■□ 25.8
CDCA4-201ENST00000336219 CARD11Q9BXL7 1154 aa26.98■■□□□ 1.91
CDCA4-201ENST00000336219 SAMD9LQ8IVG5 1584 aa26.97■■□□□ 1.91
CDCA4-201ENST00000336219 PREX2Q70Z35 1606 aa26.97■■□□□ 1.91
CDCA4-201ENST00000336219 PAK3O75914 559 aaPredicted RBP26.95■■□□□ 1.91
CDCA4-201ENST00000336219 SMG6Q86US8 1419 aaKnown RBP26.95■■□□□ 1.91
CDCA4-201ENST00000336219 CCDC141Q6ZP82 1450 aa26.95■■□□□ 1.91
CDCA4-201ENST00000336219 NUDCQ9Y266 331 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms