RNA–Protein interactions for RNA: ENST00000330687.8

CMTM4-201, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 3,414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-201ENST00000330687 FGD6Q6ZV73 1430 aa27.13■■□□□ 1.93
CMTM4-201ENST00000330687 ARID4BQ4LE39 1312 aaPredicted RBP27.13■■□□□ 1.93
CMTM4-201ENST00000330687 NAP1L5Q96NT1 182 aaPredicted RBP27.12■■□□□ 1.93
CMTM4-201ENST00000330687 FMN1Q68DA7 1419 aa27.12■■□□□ 1.93
CMTM4-201ENST00000330687 IGF1RP08069 1367 aa27.11■■□□□ 1.93
CMTM4-201ENST00000330687 PNISRQ8TF01 805 aaKnown RBP27.1■■□□□ 1.93
CMTM4-201ENST00000330687 CRBNQ96SW2 442 aa27.1■■□□□ 1.93
CMTM4-201ENST00000330687 RNF123Q5XPI4 1314 aa27.08■■□□□ 1.93
CMTM4-201ENST00000330687 NCOA1Q15788 1441 aa27.08■■□□□ 1.92
CMTM4-201ENST00000330687 SLC4A1APQ9BWU0 796 aaKnown RBP27.07■■□□□ 1.92
CMTM4-201ENST00000330687 NAIPQ13075 1403 aa27.06■■□□□ 1.92
CMTM4-201ENST00000330687 GLIPR1L2Q4G1C9 344 aa27.06■■□□□ 1.92
CMTM4-201ENST00000330687 MS4A1P11836 297 aa27.05■■□□□ 1.92
CMTM4-201ENST00000330687 SLKQ9H2G2 1235 aaPredicted RBP27.04■■□□□ 1.92
CMTM4-201ENST00000330687 HFM1A2PYH4 1435 aa27.04■■□□□ 1.92
CMTM4-201ENST00000330687 CUX1P39880 1505 aa27.03■■□□□ 1.92
CMTM4-201ENST00000330687 NCOA2Q15596 1464 aa27.03■■□□□ 1.92
CMTM4-201ENST00000330687 KDM2AQ9Y2K7 1162 aa27.01■■□□□ 1.91
CMTM4-201ENST00000330687 POGKQ9P215 609 aa26.99■■□□□ 1.91
CMTM4-201ENST00000330687 PCF11O94913 1555 aaKnown RBP26.99■■□□□ 1.91
CMTM4-201ENST00000330687 FAM43AQ8N2R8 423 aa26.98■■□□□ 1.91
CMTM4-201ENST00000330687 GZF1Q9H116 711 aaPredicted RBP26.96■■□□□ 1.91
CMTM4-201ENST00000330687 C20orf194Q5TEA3 1177 aa26.95■■□□□ 1.91
CMTM4-201ENST00000330687 PEG3Q9GZU2 1588 aa26.94■■□□□ 1.9
CMTM4-201ENST00000330687 SPRYD3Q8NCJ5 442 aa26.93■■□□□ 1.9
CMTM4-201ENST00000330687 ZMYND15Q9H091 742 aa26.92■■□□□ 1.9
CMTM4-201ENST00000330687 RRAGDQ9NQL2 400 aaPredicted RBP26.91■■□□□ 1.9
CMTM4-201ENST00000330687 KDM5BQ9UGL1 1544 aa26.91■■□□□ 1.9
CMTM4-201ENST00000330687 PTPN23Q9H3S7 1636 aa26.9■■□□□ 1.9
CMTM4-201ENST00000330687 MAP3K1Q13233 1512 aa26.89■■□□□ 1.9
CMTM4-201ENST00000330687 NCAPD3P42695 1498 aa26.89■■□□□ 1.9
CMTM4-201ENST00000330687 CC2D1BQ5T0F9 858 aaKnown RBP26.87■■□□□ 1.89
CMTM4-201ENST00000330687 CARD11Q9BXL7 1154 aa26.86■■□□□ 1.89
CMTM4-201ENST00000330687 HSP90AA2PQ14568 343 aaPredicted RBP26.85■■□□□ 1.89
CMTM4-201ENST00000330687 USP47Q96K76 1375 aa26.85■■□□□ 1.89
CMTM4-201ENST00000330687 PNNQ9H307 717 aaKnown RBP26.84■■□□□ 1.89
CMTM4-201ENST00000330687 BIVM-ERCC5R4GMW8 1640 aa26.84■■□□□ 1.89
CMTM4-201ENST00000330687 FAM161AQ3B820 660 aa26.84■■□□□ 1.89
CMTM4-201ENST00000330687 DHX29Q7Z478 1369 aaKnown RBP26.83■■□□□ 1.89
CMTM4-201ENST00000330687 CFTRP13569 1480 aa26.79■■□□□ 1.88
CMTM4-201ENST00000330687 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.78■■□□□ 1.88
CMTM4-201ENST00000330687 HSP90AA1P07900 732 aaKnown RBP26.78■■□□□ 1.88
CMTM4-201ENST00000330687 ST20-MTHFSA0A0A6YYL1 179 aa26.77■■□□□ 1.88
CMTM4-201ENST00000330687 MYOM3Q5VTT5 1437 aa26.76■■□□□ 1.87
CMTM4-201ENST00000330687 UNC13AQ9UPW8 1703 aa26.76■■□□□ 1.87
CMTM4-201ENST00000330687 MYBBP1AQ9BQG0 1328 aaKnown RBP26.76■■□□□ 1.87
CMTM4-201ENST00000330687 CASKIN1Q8WXD9 1431 aa26.73■■□□□ 1.87
CMTM4-201ENST00000330687 C8orf34Q49A92 452 aa26.71■■□□□ 1.87
CMTM4-201ENST00000330687 ZNF777Q9ULD5 760 aaPredicted RBP26.71■■□□□ 1.87
CMTM4-201ENST00000330687 PANK2Q9BZ23 570 aa26.69■■□□□ 1.86
CMTM4-201ENST00000330687 FYCO1Q9BQS8 1478 aa26.69■■□□□ 1.86
CMTM4-201ENST00000330687 KIF15Q9NS87 1388 aa26.67■■□□□ 1.86
CMTM4-201ENST00000330687 CENPQQ7L2Z9 268 aaPredicted RBP26.67■■□□□ 1.86
CMTM4-201ENST00000330687 L1TD1Q5T7N2 865 aaKnown RBP26.66■■□□□ 1.86
CMTM4-201ENST00000330687 NLRP13Q86W25 1043 aa26.66■■□□□ 1.86
CMTM4-201ENST00000330687 KTN1Q86UP2 1357 aaKnown RBP26.65■■□□□ 1.86
CMTM4-201ENST00000330687 DENND4BO75064 1496 aaPredicted RBP26.64■■□□□ 1.86
CMTM4-201ENST00000330687 PDE3BQ13370 1112 aa26.64■■□□□ 1.86
CMTM4-201ENST00000330687 RALBP1Q15311 655 aa26.64■■□□□ 1.86
CMTM4-201ENST00000330687 ZNF644Q9H582 1327 aaPredicted RBP26.64■■□□□ 1.86
CMTM4-201ENST00000330687 CFAP43Q8NDM7 1665 aa26.62■■□□□ 1.85
CMTM4-201ENST00000330687 PKD2Q13563 968 aa26.62■■□□□ 1.85
CMTM4-201ENST00000330687 FGD5Q6ZNL6 1462 aa26.62■■□□□ 1.85
CMTM4-201ENST00000330687 ANKRD30BQ9BXX2 1392 aa26.62■■□□□ 1.85
CMTM4-201ENST00000330687 GOLGA6L3A6NEY3 463 aa26.62■■□□□ 1.85
CMTM4-201ENST00000330687 BECN1Q14457 450 aa26.62■■□□□ 1.85
CMTM4-201ENST00000330687 SPATA31E1Q6ZUB1 1445 aa26.61■■□□□ 1.85
CMTM4-201ENST00000330687 ARID3AQ99856 593 aa26.59■■□□□ 1.85
CMTM4-201ENST00000330687 BRD4O60885 1362 aaPredicted RBP26.59■■□□□ 1.85
CMTM4-201ENST00000330687 CANXP27824 592 aaKnown RBP26.58■■□□□ 1.85
CMTM4-201ENST00000330687 KDM6BO15054 1643 aa26.58■■□□□ 1.85
CMTM4-201ENST00000330687 SEC24BO95487 1268 aa26.58■■□□□ 1.84
CMTM4-201ENST00000330687 BICRAQ9NZM4 1560 aa26.57■■□□□ 1.84
CMTM4-201ENST00000330687 XRCC6P12956 609 aaKnown RBP eCLIP26.56■■□□□ 1.84
CMTM4-201ENST00000330687 RGL3Q3MIN7 710 aa26.56■■□□□ 1.84
CMTM4-201ENST00000330687 RPRD2Q5VT52 1461 aaKnown RBP26.52■■□□□ 1.84
CMTM4-201ENST00000330687 LRPPRCP42704 1394 aaKnown RBP26.52■■□□□ 1.84
CMTM4-201ENST00000330687 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.52■■□□□ 1.84
CMTM4-201ENST00000330687 WDR43Q15061 677 aaKnown RBP eCLIP26.5■■□□□ 1.83
CMTM4-201ENST00000330687 CCDC146Q8IYE0 955 aa26.49■■□□□ 1.83
CMTM4-201ENST00000330687 ADAMTS8Q9UP79 889 aa26.49■■□□□ 1.83
CMTM4-201ENST00000330687 KDM2BQ8NHM5 1336 aa26.48■■□□□ 1.83
CMTM4-201ENST00000330687 UPF2Q9HAU5 1272 aaKnown RBP26.48■■□□□ 1.83
CMTM4-201ENST00000330687 TRIM44Q96DX7 344 aaPredicted RBP26.48■■□□□ 1.83
CMTM4-201ENST00000330687 RAD54L2Q9Y4B4 1467 aa26.47■■□□□ 1.83
CMTM4-201ENST00000330687 PLEKHG5O94827 1062 aa26.46■■□□□ 1.83
CMTM4-201ENST00000330687 ROCK2O75116 1388 aaKnown RBP26.45■■□□□ 1.82
CMTM4-201ENST00000330687 MIA2Q96PC5 1412 aa26.45■■□□□ 1.82
CMTM4-201ENST00000330687 TEX14Q8IWB6 1497 aa26.44■■□□□ 1.82
CMTM4-201ENST00000330687 RRP9O43818 475 aaKnown RBP26.44■■□□□ 1.82
CMTM4-201ENST00000330687 BCAR3O75815 825 aa26.44■■□□□ 1.82
CMTM4-201ENST00000330687 PODXL2Q9NZ53 605 aa26.44■■□□□ 1.82
CMTM4-201ENST00000330687 MYH16Q9H6N6 1097 aa26.43■■□□□ 1.82
CMTM4-201ENST00000330687 A0A0U1RQG5 324 aaPredicted RBP26.41■■□□□ 1.82
CMTM4-201ENST00000330687 IGHDP01880 384 aa26.4■■□□□ 1.82
CMTM4-201ENST00000330687 PANK3Q9H999 370 aa26.4■■□□□ 1.82
CMTM4-201ENST00000330687 COG6Q9Y2V7 657 aa26.39■■□□□ 1.81
CMTM4-201ENST00000330687 GOLGA2Q08379 1002 aa26.38■■□□□ 1.81
CMTM4-201ENST00000330687 CLCN1P35523 988 aa26.37■■□□□ 1.81
CMTM4-201ENST00000330687 BCORL1Q5H9F3 1711 aa26.36■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms