RNA–Protein interactions for RNA: ENST00000330588.4

SMG1-201, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5 BASIC

Gene SMG1, Length 1,588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-201ENST00000330588 SYNJ1O43426 1573 aa11.15□□□□□ -0.62
SMG1-201ENST00000330588 VASPP50552 380 aaPredicted RBP11.15□□□□□ -0.62
SMG1-201ENST00000330588 IER5LQ5T953 404 aa11.13□□□□□ -0.63
SMG1-201ENST00000330588 TRIM35Q9UPQ4 493 aa11.12□□□□□ -0.63
SMG1-201ENST00000330588 RIMBP3CA6NJZ7 1639 aa11.12□□□□□ -0.63
SMG1-201ENST00000330588 RIMBP3BA6NNM3 1639 aa11.12□□□□□ -0.63
SMG1-201ENST00000330588 RIMBP3Q9UFD9 1639 aa11.12□□□□□ -0.63
SMG1-201ENST00000330588 ARHGEF11O15085 1522 aa11.12□□□□□ -0.63
SMG1-201ENST00000330588 CLASP1Q7Z460 1538 aa11.12□□□□□ -0.63
SMG1-201ENST00000330588 DCAF8Q5TAQ9 597 aa11.11□□□□□ -0.63
SMG1-201ENST00000330588 COLQQ9Y215 455 aaPredicted RBP11.11□□□□□ -0.63
SMG1-201ENST00000330588 ERICH3Q5RHP9 1530 aa11.11□□□□□ -0.63
SMG1-201ENST00000330588 ADAMTS12P58397 1594 aa11.08□□□□□ -0.64
SMG1-201ENST00000330588 TMEM106CQ9BVX2 250 aa11.07□□□□□ -0.64
SMG1-201ENST00000330588 SCUBE2Q9NQ36 999 aa11.07□□□□□ -0.64
SMG1-201ENST00000330588 PYGBP11216 843 aa11.07□□□□□ -0.64
SMG1-201ENST00000330588 CHMP7Q8WUX9 453 aaPredicted RBP11.06□□□□□ -0.64
SMG1-201ENST00000330588 FHAD1B1AJZ9 1412 aa11.05□□□□□ -0.64
SMG1-201ENST00000330588 GRIN2AQ12879 1464 aa11.04□□□□□ -0.64
SMG1-201ENST00000330588 SEC24BO95487 1268 aa11.04□□□□□ -0.64
SMG1-201ENST00000330588 KLHL34Q8N239 644 aa11.03□□□□□ -0.64
SMG1-201ENST00000330588 NUP160Q12769 1436 aa11.03□□□□□ -0.64
SMG1-201ENST00000330588 GSE1Q14687 1217 aa11.03□□□□□ -0.64
SMG1-201ENST00000330588 ARAP1Q96P48 1450 aa11.01□□□□□ -0.65
SMG1-201ENST00000330588 CHRM1P11229 460 aaPredicted RBP11□□□□□ -0.65
SMG1-201ENST00000330588 TRIM41Q8WV44 630 aa11□□□□□ -0.65
SMG1-201ENST00000330588 PCDHB8Q9UN66 801 aa11□□□□□ -0.65
SMG1-201ENST00000330588 POTEMA6NI47 508 aa10.99□□□□□ -0.65
SMG1-201ENST00000330588 IRX5P78411 483 aaPredicted RBP10.99□□□□□ -0.65
SMG1-201ENST00000330588 LCE2DQ5TA82 110 aaPredicted RBP10.99□□□□□ -0.65
SMG1-201ENST00000330588 CUL7Q14999 1698 aa10.99□□□□□ -0.65
SMG1-201ENST00000330588 SHROOM2Q13796 1616 aa10.98□□□□□ -0.65
SMG1-201ENST00000330588 CEP170Q5SW79 1584 aa10.98□□□□□ -0.65
SMG1-201ENST00000330588 KIF27Q86VH2 1401 aa10.97□□□□□ -0.65
SMG1-201ENST00000330588 POTEGQ6S5H5 508 aa10.97□□□□□ -0.65
SMG1-201ENST00000330588 IFNLR1Q8IU57 520 aaPredicted RBP10.97□□□□□ -0.65
SMG1-201ENST00000330588 ZNF467Q7Z7K2 595 aaPredicted RBP10.94□□□□□ -0.66
SMG1-201ENST00000330588 PLCG2P16885 1265 aa10.94□□□□□ -0.66
SMG1-201ENST00000330588 IGF1RP08069 1367 aa10.92□□□□□ -0.66
SMG1-201ENST00000330588 SPOCK2Q92563 424 aa10.92□□□□□ -0.66
SMG1-201ENST00000330588 OCEL1Q9H607 264 aa10.92□□□□□ -0.66
SMG1-201ENST00000330588 RUSC2Q8N2Y8 1516 aa10.92□□□□□ -0.66
SMG1-201ENST00000330588 CYB5RLQ6IPT4 315 aa10.91□□□□□ -0.66
SMG1-201ENST00000330588 KIAA0586Q9BVV6 1533 aa10.89□□□□□ -0.67
SMG1-201ENST00000330588 FAM163AQ96GL9 167 aaPredicted RBP10.89□□□□□ -0.67
SMG1-201ENST00000330588 PCDH10Q9P2E7 1040 aa10.86□□□□□ -0.67
SMG1-201ENST00000330588 CARMIL1Q5VZK9 1371 aa10.85□□□□□ -0.67
SMG1-201ENST00000330588 PSEN1P49768 467 aa10.85□□□□□ -0.67
SMG1-201ENST00000330588 ERCC6L2Q5T890 1561 aa10.85□□□□□ -0.67
SMG1-201ENST00000330588 SLAIN1Q8ND83 568 aa10.84□□□□□ -0.67
SMG1-201ENST00000330588 PRG4Q92954 1404 aaPredicted RBP10.84□□□□□ -0.67
SMG1-201ENST00000330588 PDCD7Q8N8D1 485 aaKnown RBP10.83□□□□□ -0.68
SMG1-201ENST00000330588 JPH4Q96JJ6 628 aa10.83□□□□□ -0.68
SMG1-201ENST00000330588 PDAP1Q13442 181 aaKnown RBP10.81□□□□□ -0.68
SMG1-201ENST00000330588 RAPGEF2Q9Y4G8 1499 aa10.8□□□□□ -0.68
SMG1-201ENST00000330588 ILDR1Q86SU0 546 aaPredicted RBP10.8□□□□□ -0.68
SMG1-201ENST00000330588 CIZ1Q9ULV3 898 aaPredicted RBP10.8□□□□□ -0.68
SMG1-201ENST00000330588 IQGAP2Q13576 1575 aa10.79□□□□□ -0.68
SMG1-201ENST00000330588 MKRN3Q13064 507 aaKnown RBP10.78□□□□□ -0.68
SMG1-201ENST00000330588 GOLGA2Q08379 1002 aa10.77□□□□□ -0.69
SMG1-201ENST00000330588 CARMIL2Q6F5E8 1435 aa10.76□□□□□ -0.69
SMG1-201ENST00000330588 UGGT2Q9NYU1 1516 aa10.76□□□□□ -0.69
SMG1-201ENST00000330588 EEA1Q15075 1411 aa10.75□□□□□ -0.69
SMG1-201ENST00000330588 PRXQ9BXM0 1461 aa10.75□□□□□ -0.69
SMG1-201ENST00000330588 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.74□□□□□ -0.69
SMG1-201ENST00000330588 MAPKBP1O60336 1514 aa10.74□□□□□ -0.69
SMG1-201ENST00000330588 ST18O60284 1047 aa10.73□□□□□ -0.69
SMG1-201ENST00000330588 CTTNBP2Q8WZ74 1663 aa10.73□□□□□ -0.69
SMG1-201ENST00000330588 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.73□□□□□ -0.692e-9■■■■□ 23.8
SMG1-201ENST00000330588 L3MBTL3Q96JM7 780 aaPredicted RBP10.73□□□□□ -0.69
SMG1-201ENST00000330588 ADCY10Q96PN6 1610 aa10.72□□□□□ -0.69
SMG1-201ENST00000330588 TNIKQ9UKE5 1360 aa10.72□□□□□ -0.69
SMG1-201ENST00000330588 UHRF1BP1LA0JNW5 1464 aa10.71□□□□□ -0.69
SMG1-201ENST00000330588 DISP1Q96F81 1524 aa10.71□□□□□ -0.7
SMG1-201ENST00000330588 PTPRGP23470 1445 aa10.7□□□□□ -0.7
SMG1-201ENST00000330588 KIAA0556O60303 1618 aa10.69□□□□□ -0.7
SMG1-201ENST00000330588 CABP2Q9NPB3 220 aa10.69□□□□□ -0.7
SMG1-201ENST00000330588 GOLGA3Q08378 1498 aa10.69□□□□□ -0.7
SMG1-201ENST00000330588 ABCC2Q92887 1545 aa10.67□□□□□ -0.7
SMG1-201ENST00000330588 KIF13AQ9H1H9 1805 aa10.67□□□□□ -0.7
SMG1-201ENST00000330588 SNPHO15079 494 aa10.67□□□□□ -0.7
SMG1-201ENST00000330588 ABCC10Q5T3U5 1492 aa10.66□□□□□ -0.7
SMG1-201ENST00000330588 DPY19L2Q6NUT2 758 aa10.65□□□□□ -0.7
SMG1-201ENST00000330588 C3orf67Q6ZVT6 689 aa10.65□□□□□ -0.7
SMG1-201ENST00000330588 TMEM121BQ9BXQ6 578 aaPredicted RBP10.65□□□□□ -0.7
SMG1-201ENST00000330588 DIP2BQ9P265 1576 aa10.65□□□□□ -0.7
SMG1-201ENST00000330588 UACAQ9BZF9 1416 aa10.65□□□□□ -0.7
SMG1-201ENST00000330588 CDAN1Q8IWY9 1227 aa10.64□□□□□ -0.71
SMG1-201ENST00000330588 RTN4Q9NQC3 1192 aaKnown RBP10.64□□□□□ -0.71
SMG1-201ENST00000330588 KDM5BQ9UGL1 1544 aa10.63□□□□□ -0.71
SMG1-201ENST00000330588 PLB1Q6P1J6 1458 aa10.62□□□□□ -0.71
SMG1-201ENST00000330588 KIF21BO75037 1637 aa10.62□□□□□ -0.71
SMG1-201ENST00000330588 GLI2P10070 1586 aa10.61□□□□□ -0.71
SMG1-201ENST00000330588 RNF25Q96BH1 459 aaPredicted RBP10.6□□□□□ -0.71
SMG1-201ENST00000330588 SAMD9Q5K651 1589 aa10.6□□□□□ -0.71
SMG1-201ENST00000330588 ABCA8O94911 1581 aa10.59□□□□□ -0.71
SMG1-201ENST00000330588 BOLA1Q9Y3E2 137 aa10.59□□□□□ -0.71
SMG1-201ENST00000330588 RIOK3O14730 519 aaKnown RBP10.58□□□□□ -0.72
SMG1-201ENST00000330588 EFCAB3Q8N7B9 438 aa10.58□□□□□ -0.72
SMG1-201ENST00000330588 ASXL2Q76L83 1435 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms