RNA–Protein interactions for RNA: ENST00000330295.9

CTHRC1-201, Transcript of collagen triple helix repeat containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTHRC1, Length 1,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-201ENST00000330295 MAGI2Q86UL8 1455 aa25.87■■□□□ 1.73
CTHRC1-201ENST00000330295 UHRF1BP1Q6BDS2 1440 aa25.86■■□□□ 1.73
CTHRC1-201ENST00000330295 CEBPAP49715 358 aaPredicted RBP25.85■■□□□ 1.73
CTHRC1-201ENST00000330295 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.83■■□□□ 1.73
CTHRC1-201ENST00000330295 HNRNPUL2Q1KMD3 747 aaKnown RBP25.83■■□□□ 1.73
CTHRC1-201ENST00000330295 P3H3Q8IVL6 736 aa25.81■■□□□ 1.72
CTHRC1-201ENST00000330295 HECW1Q76N89 1606 aa25.81■■□□□ 1.72
CTHRC1-201ENST00000330295 RAPGEF6Q8TEU7 1601 aa25.81■■□□□ 1.72
CTHRC1-201ENST00000330295 SETD1BQ9UPS6 1966 aaKnown RBP25.8■■□□□ 1.72
CTHRC1-201ENST00000330295 ATP10AO60312 1499 aa25.73■■□□□ 1.71
CTHRC1-201ENST00000330295 C9orf84Q5VXU9 1444 aa25.72■■□□□ 1.71
CTHRC1-201ENST00000330295 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.71■■□□□ 1.71
CTHRC1-201ENST00000330295 NUP153P49790 1475 aaKnown RBP25.71■■□□□ 1.71
CTHRC1-201ENST00000330295 UBAP1LF5GYI3 381 aa25.68■■□□□ 1.7
CTHRC1-201ENST00000330295 PLEKHD1A6NEE1 506 aa25.67■■□□□ 1.7
CTHRC1-201ENST00000330295 PRXQ9BXM0 1461 aa25.66■■□□□ 1.7
CTHRC1-201ENST00000330295 SCAPERQ9BY12 1400 aa25.65■■□□□ 1.7
CTHRC1-201ENST00000330295 SAMD9Q5K651 1589 aa25.65■■□□□ 1.7
CTHRC1-201ENST00000330295 NCOA1Q15788 1441 aa25.64■■□□□ 1.7
CTHRC1-201ENST00000330295 MED1Q15648 1581 aaPredicted RBP25.64■■□□□ 1.69
CTHRC1-201ENST00000330295 C3P01024 1663 aa25.6■■□□□ 1.69
CTHRC1-201ENST00000330295 TRAPPC8Q9Y2L5 1435 aa25.55■■□□□ 1.68
CTHRC1-201ENST00000330295 ZNF335Q9H4Z2 1342 aaPredicted RBP25.54■■□□□ 1.68
CTHRC1-201ENST00000330295 PLCH2O75038 1416 aa25.52■■□□□ 1.68
CTHRC1-201ENST00000330295 CAMSAP1Q5T5Y3 1602 aa25.5■■□□□ 1.67
CTHRC1-201ENST00000330295 HSPA1LP34931 641 aa25.48■■□□□ 1.67
CTHRC1-201ENST00000330295 REREQ9P2R6 1566 aa25.45■■□□□ 1.66
CTHRC1-201ENST00000330295 ZNF518AQ6AHZ1 1483 aa25.45■■□□□ 1.66
CTHRC1-201ENST00000330295 ESF1Q9H501 851 aaKnown RBP25.44■■□□□ 1.66
CTHRC1-201ENST00000330295 DIP2CQ9Y2E4 1556 aa25.44■■□□□ 1.66
CTHRC1-201ENST00000330295 KDM5CP41229 1560 aa25.43■■□□□ 1.66
CTHRC1-201ENST00000330295 NCKAP5LQ9HCH0 1330 aa25.42■■□□□ 1.66
CTHRC1-201ENST00000330295 EFCAB2Q5VUJ9 269 aa25.41■■□□□ 1.66
CTHRC1-201ENST00000330295 SCAF1Q9H7N4 1312 aaKnown RBP25.4■■□□□ 1.66
CTHRC1-201ENST00000330295 AGLP35573 1532 aa25.39■■□□□ 1.66
CTHRC1-201ENST00000330295 MYO5CQ9NQX4 1742 aa25.38■■□□□ 1.65
CTHRC1-201ENST00000330295 AFAP1Q8N556 730 aa25.37■■□□□ 1.65
CTHRC1-201ENST00000330295 MYT1LQ9UL68 1186 aa25.37■■□□□ 1.65
CTHRC1-201ENST00000330295 CNTLNQ9NXG0 1405 aa25.37■■□□□ 1.65
CTHRC1-201ENST00000330295 PIP4K2BP78356 416 aa25.36■■□□□ 1.65
CTHRC1-201ENST00000330295 ABCA6Q8N139 1617 aa25.35■■□□□ 1.65
CTHRC1-201ENST00000330295 NPATQ14207 1427 aa25.35■■□□□ 1.65
CTHRC1-201ENST00000330295 CDK13Q14004 1512 aaKnown RBP25.34■■□□□ 1.65
CTHRC1-201ENST00000330295 PKD2Q13563 968 aa25.33■■□□□ 1.65
CTHRC1-201ENST00000330295 PLA2R1Q13018 1463 aa25.32■■□□□ 1.64
CTHRC1-201ENST00000330295 TOM1O60784 492 aa25.3■■□□□ 1.64
CTHRC1-201ENST00000330295 RANGAP1P46060 587 aaPredicted RBP25.3■■□□□ 1.64
CTHRC1-201ENST00000330295 TCOF1Q13428 1488 aaKnown RBP25.29■■□□□ 1.64
CTHRC1-201ENST00000330295 MLH3Q9UHC1 1453 aa25.28■■□□□ 1.64
CTHRC1-201ENST00000330295 MROH2AA6NES4 1674 aa25.27■■□□□ 1.64
CTHRC1-201ENST00000330295 ZNF142P52746 1687 aaPredicted RBP25.26■■□□□ 1.63
CTHRC1-201ENST00000330295 PPP6R1Q9UPN7 881 aa25.26■■□□□ 1.63
CTHRC1-201ENST00000330295 SUPT6HQ7KZ85 1726 aaKnown RBP25.26■■□□□ 1.63
CTHRC1-201ENST00000330295 ARHGAP5Q13017 1502 aa25.25■■□□□ 1.63
CTHRC1-201ENST00000330295 MYO3AQ8NEV4 1616 aa25.23■■□□□ 1.63
CTHRC1-201ENST00000330295 ZMYM3Q14202 1370 aa25.21■■□□□ 1.63
CTHRC1-201ENST00000330295 CEP170BQ9Y4F5 1589 aaPredicted RBP25.21■■□□□ 1.63
CTHRC1-201ENST00000330295 CPS1P31327 1500 aa25.2■■□□□ 1.62
CTHRC1-201ENST00000330295 KIF14Q15058 1648 aa25.19■■□□□ 1.62
CTHRC1-201ENST00000330295 KIDINS220Q9ULH0 1771 aa25.14■■□□□ 1.62
CTHRC1-201ENST00000330295 PTPRKQ15262 1439 aa25.12■■□□□ 1.61
CTHRC1-201ENST00000330295 CSRNP3Q8WYN3 585 aa25.12■■□□□ 1.61
CTHRC1-201ENST00000330295 SHANK2Q9UPX8 1470 aa25.11■■□□□ 1.61
CTHRC1-201ENST00000330295 ALKQ9UM73 1620 aa25.11■■□□□ 1.61
CTHRC1-201ENST00000330295 CDK11AQ9UQ88 783 aaPredicted RBP25.1■■□□□ 1.61
CTHRC1-201ENST00000330295 ABCC1P33527 1531 aa25.09■■□□□ 1.61
CTHRC1-201ENST00000330295 RGS17Q9UGC6 210 aaPredicted RBP25.09■■□□□ 1.61
CTHRC1-201ENST00000330295 CLTCQ00610 1675 aaKnown RBP25.09■■□□□ 1.61
CTHRC1-201ENST00000330295 CDC42BPBQ9Y5S2 1711 aa25.09■■□□□ 1.61
CTHRC1-201ENST00000330295 ITSN2Q9NZM3 1697 aa25.08■■□□□ 1.61
CTHRC1-201ENST00000330295 TROQ12816 1431 aaPredicted RBP25.06■■□□□ 1.6
CTHRC1-201ENST00000330295 POLR1AO95602 1720 aaPredicted RBP25.04■■□□□ 1.6
CTHRC1-201ENST00000330295 ATP1B4Q9UN42 357 aaPredicted RBP25.04■■□□□ 1.6
CTHRC1-201ENST00000330295 NEURL4Q96JN8 1562 aa25.03■■□□□ 1.6
CTHRC1-201ENST00000330295 DNMT1P26358 1616 aaKnown RBP25.02■■□□□ 1.6
CTHRC1-201ENST00000330295 CLIP1P30622 1438 aa25.02■■□□□ 1.6
CTHRC1-201ENST00000330295 A2ML1A8K2U0 1454 aa25.02■■□□□ 1.6
CTHRC1-201ENST00000330295 PREX2Q70Z35 1606 aa25.01■■□□□ 1.59
CTHRC1-201ENST00000330295 VWDEQ8N2E2 1590 aa24.98■■□□□ 1.59
CTHRC1-201ENST00000330295 SAMD9LQ8IVG5 1584 aa24.96■■□□□ 1.59
CTHRC1-201ENST00000330295 FMN1Q68DA7 1419 aa24.94■■□□□ 1.58
CTHRC1-201ENST00000330295 PLXNC1O60486 1568 aa24.91■■□□□ 1.58
CTHRC1-201ENST00000330295 POTEAQ6S8J7 498 aa24.9■■□□□ 1.58
CTHRC1-201ENST00000330295 RNF17Q9BXT8 1623 aaKnown RBP24.88■■□□□ 1.57
CTHRC1-201ENST00000330295 GGT6Q6P531 493 aa24.88■■□□□ 1.57
CTHRC1-201ENST00000330295 SPAG9O60271 1321 aaKnown RBP24.87■■□□□ 1.57
CTHRC1-201ENST00000330295 A2MP01023 1474 aa24.85■■□□□ 1.57
CTHRC1-201ENST00000330295 ANKLE2Q86XL3 938 aa24.85■■□□□ 1.57
CTHRC1-201ENST00000330295 LRRIQ1Q96JM4 1722 aa24.84■■□□□ 1.57
CTHRC1-201ENST00000330295 ATP7AQ04656 1500 aa24.84■■□□□ 1.57
CTHRC1-201ENST00000330295 LRRC7Q96NW7 1537 aa24.84■■□□□ 1.57
CTHRC1-201ENST00000330295 CDC42BPAQ5VT25 1732 aa24.83■■□□□ 1.57
CTHRC1-201ENST00000330295 NPHP4O75161 1426 aaPredicted RBP24.82■■□□□ 1.56
CTHRC1-201ENST00000330295 MED14O60244 1454 aa24.82■■□□□ 1.56
CTHRC1-201ENST00000330295 SYCP2Q9BX26 1530 aa24.81■■□□□ 1.56
CTHRC1-201ENST00000330295 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.81■■□□□ 1.56
CTHRC1-201ENST00000330295 SETD1AO15047 1707 aaKnown RBP24.81■■□□□ 1.56
CTHRC1-201ENST00000330295 STRCP1A6NGW2 1772 aa24.81■■□□□ 1.56
CTHRC1-201ENST00000330295 SYNMO15061 1565 aa24.8■■□□□ 1.56
CTHRC1-201ENST00000330295 EEA1Q15075 1411 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 365 ms