RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 TCOF1Q13428 1488 aaKnown RBP23.01■■□□□ 1.27
USH1C-202ENST00000318024 UHRF1BP1LA0JNW5 1464 aa22.98■■□□□ 1.27
USH1C-202ENST00000318024 ADCY10Q96PN6 1610 aa22.97■■□□□ 1.27
USH1C-202ENST00000318024 RRP7BPQ9NSQ0 103 aa22.97■■□□□ 1.27
USH1C-202ENST00000318024 ABCC10Q5T3U5 1492 aa22.96■■□□□ 1.27
USH1C-202ENST00000318024 KDM5BQ9UGL1 1544 aa22.94■■□□□ 1.26
USH1C-202ENST00000318024 ZCCHC11Q5TAX3 1644 aaKnown RBP22.93■■□□□ 1.26
USH1C-202ENST00000318024 CAMSAP2Q08AD1 1489 aa22.89■■□□□ 1.26
USH1C-202ENST00000318024 SUPT16HQ9Y5B9 1047 aaKnown RBP22.89■■□□□ 1.26
USH1C-202ENST00000318024 ABCC5O15440 1437 aa22.88■■□□□ 1.25
USH1C-202ENST00000318024 DAPK1P53355 1430 aa22.88■■□□□ 1.25
USH1C-202ENST00000318024 HFM1A2PYH4 1435 aa22.87■■□□□ 1.25
USH1C-202ENST00000318024 NAIPQ13075 1403 aa22.87■■□□□ 1.25
USH1C-202ENST00000318024 ITSN2Q9NZM3 1697 aa22.87■■□□□ 1.25
USH1C-202ENST00000318024 CDC42BPAQ5VT25 1732 aa22.86■■□□□ 1.25
USH1C-202ENST00000318024 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.85■■□□□ 1.25
USH1C-202ENST00000318024 HNRNPMP52272 730 aaKnown RBP eCLIP22.85■■□□□ 1.25
USH1C-202ENST00000318024 TTC37Q6PGP7 1564 aa22.83■■□□□ 1.25
USH1C-202ENST00000318024 NPM1P06748 294 aaKnown RBP eCLIP22.83■■□□□ 1.25
USH1C-202ENST00000318024 CYB5RLQ6IPT4 315 aa22.82■■□□□ 1.24
USH1C-202ENST00000318024 DNMT1P26358 1616 aaKnown RBP22.8■■□□□ 1.24
USH1C-202ENST00000318024 WDR7Q9Y4E6 1490 aa22.77■■□□□ 1.23
USH1C-202ENST00000318024 ASXL2Q76L83 1435 aa22.76■■□□□ 1.23
USH1C-202ENST00000318024 ARHGAP5Q13017 1502 aa22.76■■□□□ 1.23
USH1C-202ENST00000318024 CDC42BPBQ9Y5S2 1711 aa22.75■■□□□ 1.23
USH1C-202ENST00000318024 AKNAQ7Z591 1439 aa22.75■■□□□ 1.23
USH1C-202ENST00000318024 TRIM52Q96A61 297 aa22.74■■□□□ 1.23
USH1C-202ENST00000318024 PREX2Q70Z35 1606 aa22.73■■□□□ 1.23
USH1C-202ENST00000318024 TSPY4P0CV99 314 aa22.73■■□□□ 1.23
USH1C-202ENST00000318024 TSPY10P0CW01 314 aa22.73■■□□□ 1.23
USH1C-202ENST00000318024 ROCK1Q13464 1354 aa22.72■■□□□ 1.23
USH1C-202ENST00000318024 KDM6BO15054 1643 aa22.71■■□□□ 1.23
USH1C-202ENST00000318024 SAMD9LQ8IVG5 1584 aa22.71■■□□□ 1.23
USH1C-202ENST00000318024 PLCH2O75038 1416 aa22.71■■□□□ 1.23
USH1C-202ENST00000318024 MAPKBP1O60336 1514 aa22.7■■□□□ 1.23
USH1C-202ENST00000318024 MBD5Q9P267 1494 aa22.7■■□□□ 1.22
USH1C-202ENST00000318024 NCOA1Q15788 1441 aa22.69■■□□□ 1.22
USH1C-202ENST00000318024 EFCAB2Q5VUJ9 269 aa22.69■■□□□ 1.22
USH1C-202ENST00000318024 SIN3AQ96ST3 1273 aa22.69■■□□□ 1.22
USH1C-202ENST00000318024 TSHZ2Q9NRE2 1034 aa22.68■■□□□ 1.22
USH1C-202ENST00000318024 MYO5CQ9NQX4 1742 aa22.67■■□□□ 1.22
USH1C-202ENST00000318024 RIMBP3CA6NJZ7 1639 aa22.66■■□□□ 1.22
USH1C-202ENST00000318024 RIMBP3BA6NNM3 1639 aa22.66■■□□□ 1.22
USH1C-202ENST00000318024 RIMBP3Q9UFD9 1639 aa22.66■■□□□ 1.22
USH1C-202ENST00000318024 C9orf84Q5VXU9 1444 aa22.66■■□□□ 1.22
USH1C-202ENST00000318024 ANKRD30AQ9BXX3 1397 aa22.65■■□□□ 1.22
USH1C-202ENST00000318024 SYCP2Q9BX26 1530 aa22.65■■□□□ 1.22
USH1C-202ENST00000318024 GCC2Q8IWJ2 1684 aa22.65■■□□□ 1.22
USH1C-202ENST00000318024 RSPH4AQ5TD94 716 aa22.62■■□□□ 1.21
USH1C-202ENST00000318024 ARHGEF12Q9NZN5 1544 aa22.61■■□□□ 1.21
USH1C-202ENST00000318024 CCDC141Q6ZP82 1450 aa22.61■■□□□ 1.21
USH1C-202ENST00000318024 CROCC2H7BZ55 1655 aa22.61■■□□□ 1.21
USH1C-202ENST00000318024 ADGRL2O95490 1459 aa22.6■■□□□ 1.21
USH1C-202ENST00000318024 MPHOSPH9Q99550 1183 aa22.59■■□□□ 1.21
USH1C-202ENST00000318024 ARHGEF5Q12774 1597 aa22.59■■□□□ 1.21
USH1C-202ENST00000318024 KIAA1107Q9UPP5 1409 aa22.58■■□□□ 1.21
USH1C-202ENST00000318024 FOXD1Q16676 465 aa22.58■■□□□ 1.2
USH1C-202ENST00000318024 SHANK2Q9UPX8 1470 aa22.58■■□□□ 1.2
USH1C-202ENST00000318024 AFAP1Q8N556 730 aa22.57■■□□□ 1.2
USH1C-202ENST00000318024 KIF15Q9NS87 1388 aa22.56■■□□□ 1.2
USH1C-202ENST00000318024 ANKRD50Q9ULJ7 1429 aa22.56■■□□□ 1.2
USH1C-202ENST00000318024 ADGBQ8N7X0 1667 aa22.56■■□□□ 1.2
USH1C-202ENST00000318024 FANCAO15360 1455 aa22.55■■□□□ 1.2
USH1C-202ENST00000318024 PLEKHH2Q8IVE3 1493 aa22.55■■□□□ 1.2
USH1C-202ENST00000318024 ABCA9Q8IUA7 1624 aa22.55■■□□□ 1.2
USH1C-202ENST00000318024 TRAPPC8Q9Y2L5 1435 aa22.55■■□□□ 1.2
USH1C-202ENST00000318024 SLC4A1APQ9BWU0 796 aaKnown RBP22.53■■□□□ 1.2
USH1C-202ENST00000318024 DENND4BO75064 1496 aaPredicted RBP22.52■■□□□ 1.2
USH1C-202ENST00000318024 CD109Q6YHK3 1445 aa22.51■■□□□ 1.19
USH1C-202ENST00000318024 ABCC1P33527 1531 aa22.5■■□□□ 1.19
USH1C-202ENST00000318024 ARAP3Q8WWN8 1544 aa22.48■■□□□ 1.19
USH1C-202ENST00000318024 SCAPERQ9BY12 1400 aa22.47■■□□□ 1.19
USH1C-202ENST00000318024 ANP32EQ9BTT0 268 aa22.46■■□□□ 1.19
USH1C-202ENST00000318024 MYT1LQ9UL68 1186 aa22.46■■□□□ 1.19
USH1C-202ENST00000318024 SPAG9O60271 1321 aaKnown RBP22.46■■□□□ 1.19
USH1C-202ENST00000318024 ADGRL1O94910 1474 aa22.45■■□□□ 1.18
USH1C-202ENST00000318024 NUP155O75694 1391 aa22.44■■□□□ 1.18
USH1C-202ENST00000318024 FAM69CQ0P6D2 419 aa22.42■■□□□ 1.18
USH1C-202ENST00000318024 PZPP20742 1482 aa22.41■■□□□ 1.18
USH1C-202ENST00000318024 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.41■■□□□ 1.18
USH1C-202ENST00000318024 MAST1Q9Y2H9 1570 aa22.41■■□□□ 1.18
USH1C-202ENST00000318024 PKD2Q13563 968 aa22.4■■□□□ 1.18
USH1C-202ENST00000318024 PPP1R15AO75807 674 aaPredicted RBP22.39■■□□□ 1.18
USH1C-202ENST00000318024 TONSLQ96HA7 1378 aa22.38■■□□□ 1.17
USH1C-202ENST00000318024 ANKRD30BQ9BXX2 1392 aa22.35■■□□□ 1.17
USH1C-202ENST00000318024 TIMELESSQ9UNS1 1208 aa22.34■■□□□ 1.17
USH1C-202ENST00000318024 PLXNC1O60486 1568 aa22.33■■□□□ 1.17
USH1C-202ENST00000318024 RAPGEF3O95398 923 aa22.33■■□□□ 1.17
USH1C-202ENST00000318024 RTEL1-TNFRSF6BF6WH68 1400 aa22.32■■□□□ 1.16
USH1C-202ENST00000318024 DDX10Q13206 875 aaKnown RBP22.31■■□□□ 1.16
USH1C-202ENST00000318024 ZFYVE16Q7Z3T8 1539 aa22.31■■□□□ 1.16
USH1C-202ENST00000318024 DUOX2Q9NRD8 1548 aa22.31■■□□□ 1.16
USH1C-202ENST00000318024 FKBP8Q14318 412 aa22.29■■□□□ 1.16
USH1C-202ENST00000318024 ATP7AQ04656 1500 aa22.28■■□□□ 1.16
USH1C-202ENST00000318024 ZNF518AQ6AHZ1 1483 aa22.28■■□□□ 1.16
USH1C-202ENST00000318024 CCER2I3L3R5 266 aa22.27■■□□□ 1.16
USH1C-202ENST00000318024 ERBINQ96RT1 1412 aa22.27■■□□□ 1.16
USH1C-202ENST00000318024 POGZQ7Z3K3 1410 aa22.25■■□□□ 1.15
USH1C-202ENST00000318024 MAP3K4Q9Y6R4 1608 aa22.25■■□□□ 1.15
USH1C-202ENST00000318024 L3MBTL2Q969R5 705 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms