RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 GRIN2AQ12879 1464 aa30.53■■■□□ 2.48
SHMT1-201ENST00000316694 NUP153P49790 1475 aaKnown RBP30.51■■■□□ 2.48
SHMT1-201ENST00000316694 ZNF644Q9H582 1327 aaPredicted RBP30.51■■■□□ 2.47
SHMT1-201ENST00000316694 DAPK1P53355 1430 aa30.5■■■□□ 2.47
SHMT1-201ENST00000316694 CNTLNQ9NXG0 1405 aa30.48■■■□□ 2.47
SHMT1-201ENST00000316694 ANP32EQ9BTT0 268 aa30.46■■■□□ 2.47
SHMT1-201ENST00000316694 RAPGEF6Q8TEU7 1601 aa30.45■■■□□ 2.47
SHMT1-201ENST00000316694 C11orf95C9JLR9 678 aaPredicted RBP30.45■■■□□ 2.47
SHMT1-201ENST00000316694 ROCK1Q13464 1354 aa30.44■■■□□ 2.46
SHMT1-201ENST00000316694 ABCC5O15440 1437 aa30.44■■■□□ 2.46
SHMT1-201ENST00000316694 ANKRD30BQ9BXX2 1392 aa30.44■■■□□ 2.46
SHMT1-201ENST00000316694 RBM19Q9Y4C8 960 aaKnown RBP30.43■■■□□ 2.46
SHMT1-201ENST00000316694 ERCC6Q03468 1493 aa30.43■■■□□ 2.46
SHMT1-201ENST00000316694 DNMT1P26358 1616 aaKnown RBP30.42■■■□□ 2.46
SHMT1-201ENST00000316694 IRX6P78412 446 aaPredicted RBP30.41■■■□□ 2.46
SHMT1-201ENST00000316694 CHMP7Q8WUX9 453 aaPredicted RBP30.41■■■□□ 2.46
SHMT1-201ENST00000316694 RPRD2Q5VT52 1461 aaKnown RBP30.41■■■□□ 2.46
SHMT1-201ENST00000316694 CCDC7Q96M83 1385 aa30.41■■■□□ 2.46
SHMT1-201ENST00000316694 FBLN2P98095 1184 aa30.41■■■□□ 2.46
SHMT1-201ENST00000316694 CCDC184Q52MB2 194 aa30.41■■■□□ 2.46
SHMT1-201ENST00000316694 SLC4A1APQ9BWU0 796 aaKnown RBP30.41■■■□□ 2.46
SHMT1-201ENST00000316694 NBPF8Q3BBV2 869 aa30.4■■■□□ 2.46
SHMT1-201ENST00000316694 NCOA1Q15788 1441 aa30.4■■■□□ 2.46
SHMT1-201ENST00000316694 CDK11AQ9UQ88 783 aaPredicted RBP30.39■■■□□ 2.46
SHMT1-201ENST00000316694 PRG4Q92954 1404 aaPredicted RBP30.37■■■□□ 2.45
SHMT1-201ENST00000316694 TEX14Q8IWB6 1497 aa30.36■■■□□ 2.45
SHMT1-201ENST00000316694 PRKRIP1Q9H875 184 aaPredicted RBP30.35■■■□□ 2.45
SHMT1-201ENST00000316694 CEP170Q5SW79 1584 aa30.34■■■□□ 2.45
SHMT1-201ENST00000316694 PLB1Q6P1J6 1458 aa30.34■■■□□ 2.45
SHMT1-201ENST00000316694 FAM9BQ8IZU0 186 aa30.32■■■□□ 2.44
SHMT1-201ENST00000316694 MAGI1Q96QZ7 1491 aaPredicted RBP30.32■■■□□ 2.44
SHMT1-201ENST00000316694 MRS2Q9HD23 443 aa30.3■■■□□ 2.44
SHMT1-201ENST00000316694 SYNJ2O15056 1496 aa30.29■■■□□ 2.44
SHMT1-201ENST00000316694 TROQ12816 1431 aaPredicted RBP30.27■■■□□ 2.44
SHMT1-201ENST00000316694 CFDP1Q9UEE9 299 aaPredicted RBP30.27■■■□□ 2.44
SHMT1-201ENST00000316694 KIF7Q2M1P5 1343 aa30.27■■■□□ 2.44
SHMT1-201ENST00000316694 ZNF777Q9ULD5 760 aaPredicted RBP30.25■■■□□ 2.43
SHMT1-201ENST00000316694 JPH4Q96JJ6 628 aa30.24■■■□□ 2.43
SHMT1-201ENST00000316694 SPATA31E1Q6ZUB1 1445 aa30.23■■■□□ 2.43
SHMT1-201ENST00000316694 CAMSAP2Q08AD1 1489 aa30.23■■■□□ 2.43
SHMT1-201ENST00000316694 KIF14Q15058 1648 aa30.21■■■□□ 2.43
SHMT1-201ENST00000316694 PZPP20742 1482 aa30.21■■■□□ 2.43
SHMT1-201ENST00000316694 GPATCH8Q9UKJ3 1502 aaKnown RBP30.2■■■□□ 2.42
SHMT1-201ENST00000316694 POLR1AO95602 1720 aaPredicted RBP30.17■■■□□ 2.42
SHMT1-201ENST00000316694 CARMIL2Q6F5E8 1435 aa30.17■■■□□ 2.42
SHMT1-201ENST00000316694 ZNF326Q5BKZ1 582 aaKnown RBP30.16■■■□□ 2.42
SHMT1-201ENST00000316694 ITSN2Q9NZM3 1697 aa30.15■■■□□ 2.42
SHMT1-201ENST00000316694 NUP160Q12769 1436 aa30.14■■■□□ 2.42
SHMT1-201ENST00000316694 ZBED9Q6R2W3 1325 aa30.14■■■□□ 2.42
SHMT1-201ENST00000316694 ADGBQ8N7X0 1667 aa30.14■■■□□ 2.41
SHMT1-201ENST00000316694 CNGB1Q14028 1251 aaPredicted RBP30.12■■■□□ 2.41
SHMT1-201ENST00000316694 POLR3GLQ9BT43 218 aa30.11■■■□□ 2.41
SHMT1-201ENST00000316694 ERICH6BQ5W0A0 696 aa30.1■■■□□ 2.41
SHMT1-201ENST00000316694 KIAA1107Q9UPP5 1409 aa30.1■■■□□ 2.41
SHMT1-201ENST00000316694 PKD2Q13563 968 aa30.1■■■□□ 2.41
SHMT1-201ENST00000316694 PPP4R2Q9NY27 417 aa30.09■■■□□ 2.41
SHMT1-201ENST00000316694 ADCY10Q96PN6 1610 aa30.09■■■□□ 2.41
SHMT1-201ENST00000316694 USP47Q96K76 1375 aa30.06■■■□□ 2.4
SHMT1-201ENST00000316694 MBD5Q9P267 1494 aa30.06■■■□□ 2.4
SHMT1-201ENST00000316694 PLEKHD1A6NEE1 506 aa30.05■■■□□ 2.4
SHMT1-201ENST00000316694 ANKRD30AQ9BXX3 1397 aa30.05■■■□□ 2.4
SHMT1-201ENST00000316694 CROCC2H7BZ55 1655 aa30.05■■■□□ 2.4
SHMT1-201ENST00000316694 ADGRL2O95490 1459 aa30.04■■■□□ 2.4
SHMT1-201ENST00000316694 ANKRD50Q9ULJ7 1429 aa30■■■□□ 2.39
SHMT1-201ENST00000316694 BCORL1Q5H9F3 1711 aa30■■■□□ 2.39
SHMT1-201ENST00000316694 ATP10BO94823 1461 aa30■■■□□ 2.39
SHMT1-201ENST00000316694 DHX29Q7Z478 1369 aaKnown RBP29.99■■■□□ 2.39
SHMT1-201ENST00000316694 ABCA8O94911 1581 aa29.99■■■□□ 2.39
SHMT1-201ENST00000316694 MSH5O43196 834 aa29.98■■■□□ 2.39
SHMT1-201ENST00000316694 CDC42BPAQ5VT25 1732 aa29.98■■■□□ 2.39
SHMT1-201ENST00000316694 B4GALNT3Q6L9W6 998 aa29.97■■■□□ 2.39
SHMT1-201ENST00000316694 ABCC10Q5T3U5 1492 aa29.94■■■□□ 2.38
SHMT1-201ENST00000316694 NUP155O75694 1391 aa29.94■■■□□ 2.38
SHMT1-201ENST00000316694 FANCIQ9NVI1 1328 aa29.93■■■□□ 2.38
SHMT1-201ENST00000316694 KDM5CP41229 1560 aa29.93■■■□□ 2.38
SHMT1-201ENST00000316694 C9orf84Q5VXU9 1444 aa29.89■■■□□ 2.37
SHMT1-201ENST00000316694 HNRNPMP52272 730 aaKnown RBP eCLIP29.87■■■□□ 2.37
SHMT1-201ENST00000316694 CARD11Q9BXL7 1154 aa29.87■■■□□ 2.37
SHMT1-201ENST00000316694 ARID4BQ4LE39 1312 aaPredicted RBP29.86■■■□□ 2.37
SHMT1-201ENST00000316694 TSPY4P0CV99 314 aa29.85■■■□□ 2.37
SHMT1-201ENST00000316694 TSPY10P0CW01 314 aa29.85■■■□□ 2.37
SHMT1-201ENST00000316694 KDM2AQ9Y2K7 1162 aa29.85■■■□□ 2.37
SHMT1-201ENST00000316694 SENP3-EIF4A1A0A087X0R7 540 aa29.84■■■□□ 2.37
SHMT1-201ENST00000316694 SMG6Q86US8 1419 aaKnown RBP29.84■■■□□ 2.37
SHMT1-201ENST00000316694 RALGAPBQ86X10 1494 aa29.84■■■□□ 2.37
SHMT1-201ENST00000316694 UHRF1BP1Q6BDS2 1440 aa29.83■■■□□ 2.37
SHMT1-201ENST00000316694 PTPRGP23470 1445 aa29.82■■■□□ 2.36
SHMT1-201ENST00000316694 SHANK2Q9UPX8 1470 aa29.82■■■□□ 2.36
SHMT1-201ENST00000316694 NUDCQ9Y266 331 aa29.79■■■□□ 2.36
SHMT1-201ENST00000316694 ROCK2O75116 1388 aaKnown RBP29.79■■■□□ 2.36
SHMT1-201ENST00000316694 TMC1Q8TDI8 760 aa29.78■■■□□ 2.36
SHMT1-201ENST00000316694 ERICH6Q7L0X2 663 aa29.78■■■□□ 2.36
SHMT1-201ENST00000316694 DCAF11Q8TEB1 546 aa29.77■■■□□ 2.36
SHMT1-201ENST00000316694 ARHGEF12Q9NZN5 1544 aa29.77■■■□□ 2.36
SHMT1-201ENST00000316694 KIF15Q9NS87 1388 aa29.77■■■□□ 2.36
SHMT1-201ENST00000316694 ST20-MTHFSA0A0A6YYL1 179 aa29.76■■■□□ 2.35
SHMT1-201ENST00000316694 PNISRQ8TF01 805 aaKnown RBP29.75■■■□□ 2.35
SHMT1-201ENST00000316694 KDM5DQ9BY66 1539 aa29.73■■■□□ 2.35
SHMT1-201ENST00000316694 CDC42BPBQ9Y5S2 1711 aa29.68■■■□□ 2.34
SHMT1-201ENST00000316694 SAMD9LQ8IVG5 1584 aa29.67■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms