RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 ARHGAP35Q9NRY4 1499 aa10.78□□□□□ -0.68
VPS41-202ENST00000310301 KDM2AQ9Y2K7 1162 aa10.77□□□□□ -0.68
VPS41-202ENST00000310301 HNRNPMP52272 730 aaKnown RBP eCLIP10.76□□□□□ -0.69
VPS41-202ENST00000310301 UACAQ9BZF9 1416 aa10.76□□□□□ -0.69
VPS41-202ENST00000310301 LMOD2Q6P5Q4 547 aa10.76□□□□□ -0.69
VPS41-202ENST00000310301 MRS2Q9HD23 443 aa10.76□□□□□ -0.69
VPS41-202ENST00000310301 CUX1P39880 1505 aa10.76□□□□□ -0.69
VPS41-202ENST00000310301 A0A0G2JS52 829 aa10.76□□□□□ -0.69
VPS41-202ENST00000310301 PPM1GO15355 546 aaPredicted RBP10.76□□□□□ -0.69
VPS41-202ENST00000310301 GRIN2AQ12879 1464 aa10.76□□□□□ -0.69
VPS41-202ENST00000310301 DNTTIP2Q5QJE6 756 aaKnown RBP10.75□□□□□ -0.69
VPS41-202ENST00000310301 CDK11BP21127 795 aaKnown RBP10.75□□□□□ -0.69
VPS41-202ENST00000310301 PTMAP06454 111 aaKnown RBP10.74□□□□□ -0.69
VPS41-202ENST00000310301 RGL3Q3MIN7 710 aa10.74□□□□□ -0.69
VPS41-202ENST00000310301 LAS1LQ9Y4W2 734 aaKnown RBP10.74□□□□□ -0.69
VPS41-202ENST00000310301 CDCA8Q53HL2 280 aa10.74□□□□□ -0.69
VPS41-202ENST00000310301 SENP3Q9H4L4 574 aaPredicted RBP10.74□□□□□ -0.69
VPS41-202ENST00000310301 NCLP19338 710 aaKnown RBP10.73□□□□□ -0.69
VPS41-202ENST00000310301 TOP2BQ02880 1626 aa10.73□□□□□ -0.69
VPS41-202ENST00000310301 GOLGA6L22H0YM25 854 aa10.73□□□□□ -0.69
VPS41-202ENST00000310301 ERICH3Q5RHP9 1530 aa10.73□□□□□ -0.69
VPS41-202ENST00000310301 ZBTB7CA1YPR0 619 aa10.73□□□□□ -0.69
VPS41-202ENST00000310301 NOP58Q9Y2X3 529 aaKnown RBP10.73□□□□□ -0.69
VPS41-202ENST00000310301 VPS8Q8N3P4 1428 aa10.72□□□□□ -0.69
VPS41-202ENST00000310301 ZNF608Q9ULD9 1512 aaPredicted RBP10.72□□□□□ -0.69
VPS41-202ENST00000310301 DEKP35659 375 aaKnown RBP10.71□□□□□ -0.69
VPS41-202ENST00000310301 DMRT2Q9Y5R5 561 aa10.71□□□□□ -0.69
VPS41-202ENST00000310301 PLB1Q6P1J6 1458 aa10.71□□□□□ -0.7
VPS41-202ENST00000310301 WDR62O43379 1518 aa10.7□□□□□ -0.7
VPS41-202ENST00000310301 WDR43Q15061 677 aaKnown RBP eCLIP10.7□□□□□ -0.7
VPS41-202ENST00000310301 TEX14Q8IWB6 1497 aa10.69□□□□□ -0.7
VPS41-202ENST00000310301 PLEKHG5O94827 1062 aa10.69□□□□□ -0.7
VPS41-202ENST00000310301 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.69□□□□□ -0.7
VPS41-202ENST00000310301 AMER1Q5JTC6 1135 aaPredicted RBP10.68□□□□□ -0.7
VPS41-202ENST00000310301 CD109Q6YHK3 1445 aa10.68□□□□□ -0.7
VPS41-202ENST00000310301 PLEKHH2Q8IVE3 1493 aa10.68□□□□□ -0.7
VPS41-202ENST00000310301 SUPT16HQ9Y5B9 1047 aaKnown RBP10.67□□□□□ -0.7
VPS41-202ENST00000310301 PRDM2Q13029 1718 aa10.67□□□□□ -0.7
VPS41-202ENST00000310301 HIRIP3Q9BW71 556 aaPredicted RBP10.67□□□□□ -0.7
VPS41-202ENST00000310301 FOXD1Q16676 465 aa10.65□□□□□ -0.7
VPS41-202ENST00000310301 THEMISQ8N1K5 641 aaPredicted RBP10.65□□□□□ -0.7
VPS41-202ENST00000310301 MYH16Q9H6N6 1097 aa10.65□□□□□ -0.7
VPS41-202ENST00000310301 NUP155O75694 1391 aa10.65□□□□□ -0.71
VPS41-202ENST00000310301 PHLDB1Q86UU1 1377 aa10.65□□□□□ -0.71
VPS41-202ENST00000310301 CUL7Q14999 1698 aa10.64□□□□□ -0.71
VPS41-202ENST00000310301 ARHGAP5Q13017 1502 aa10.63□□□□□ -0.71
VPS41-202ENST00000310301 MEX3CQ5U5Q3 659 aaKnown RBP10.63□□□□□ -0.71
VPS41-202ENST00000310301 IQGAP2Q13576 1575 aa10.63□□□□□ -0.71
VPS41-202ENST00000310301 EFCAB5A4FU69 1503 aa10.63□□□□□ -0.71
VPS41-202ENST00000310301 TPRNQ4KMQ1 711 aa10.63□□□□□ -0.71
VPS41-202ENST00000310301 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.62□□□□□ -0.71
VPS41-202ENST00000310301 PHF23Q9BUL5 403 aaPredicted RBP10.61□□□□□ -0.71
VPS41-202ENST00000310301 PPP4R2Q9NY27 417 aa10.61□□□□□ -0.71
VPS41-202ENST00000310301 VGFO15240 615 aaPredicted RBP10.6□□□□□ -0.71
VPS41-202ENST00000310301 CCDC9Q9Y3X0 531 aaKnown RBP10.6□□□□□ -0.71
VPS41-202ENST00000310301 AKNAQ7Z591 1439 aa10.6□□□□□ -0.71
VPS41-202ENST00000310301 PKD2Q13563 968 aa10.59□□□□□ -0.71
VPS41-202ENST00000310301 MYOM3Q5VTT5 1437 aa10.59□□□□□ -0.71
VPS41-202ENST00000310301 ATF3P18847 181 aa10.59□□□□□ -0.71
VPS41-202ENST00000310301 ANKLE2Q86XL3 938 aa10.59□□□□□ -0.71
VPS41-202ENST00000310301 PLCB2Q00722 1185 aa10.58□□□□□ -0.72
VPS41-202ENST00000310301 SCAPERQ9BY12 1400 aa10.58□□□□□ -0.72
VPS41-202ENST00000310301 RUSC2Q8N2Y8 1516 aa10.58□□□□□ -0.72
VPS41-202ENST00000310301 RAPGEF3O95398 923 aa10.58□□□□□ -0.72
VPS41-202ENST00000310301 ZRSR1Q15695 479 aaKnown RBP10.58□□□□□ -0.72
VPS41-202ENST00000310301 KIF21AQ7Z4S6 1674 aa10.58□□□□□ -0.72
VPS41-202ENST00000310301 SENP3-EIF4A1A0A087X0R7 540 aa10.58□□□□□ -0.72
VPS41-202ENST00000310301 AFAP1Q8N556 730 aa10.57□□□□□ -0.72
VPS41-202ENST00000310301 WDR97A6NE52 1622 aa10.57□□□□□ -0.72
VPS41-202ENST00000310301 CASKIN1Q8WXD9 1431 aa10.57□□□□□ -0.72
VPS41-202ENST00000310301 SRPK2P78362 688 aaKnown RBP10.57□□□□□ -0.72
VPS41-202ENST00000310301 L1TD1Q5T7N2 865 aaKnown RBP10.57□□□□□ -0.72
VPS41-202ENST00000310301 RBM19Q9Y4C8 960 aaKnown RBP10.57□□□□□ -0.72
VPS41-202ENST00000310301 TROQ12816 1431 aaPredicted RBP10.56□□□□□ -0.72
VPS41-202ENST00000310301 STK26Q9P289 416 aa10.56□□□□□ -0.72
VPS41-202ENST00000310301 PPP6R1Q9UPN7 881 aa10.56□□□□□ -0.72
VPS41-202ENST00000310301 MSNP26038 577 aaKnown RBP10.56□□□□□ -0.72
VPS41-202ENST00000310301 CARD11Q9BXL7 1154 aa10.55□□□□□ -0.72
VPS41-202ENST00000310301 DENND4BO75064 1496 aaPredicted RBP10.55□□□□□ -0.72
VPS41-202ENST00000310301 CFAP53Q96M91 514 aa10.55□□□□□ -0.72
VPS41-202ENST00000310301 EIF4G2P78344 907 aaKnown RBP eCLIP10.54□□□□□ -0.72
VPS41-202ENST00000310301 DCAF11Q8TEB1 546 aa10.54□□□□□ -0.72
VPS41-202ENST00000310301 PAK3O75914 559 aaPredicted RBP10.54□□□□□ -0.72
VPS41-202ENST00000310301 RGS3P49796 1198 aa10.54□□□□□ -0.72
VPS41-202ENST00000310301 B4GALNT3Q6L9W6 998 aa10.54□□□□□ -0.72
VPS41-202ENST00000310301 HDGFL2Q7Z4V5 671 aaPredicted RBP10.54□□□□□ -0.72
VPS41-202ENST00000310301 CHAF1AQ13111 956 aaPredicted RBP10.53□□□□□ -0.72
VPS41-202ENST00000310301 PRXQ9BXM0 1461 aa10.53□□□□□ -0.72
VPS41-202ENST00000310301 CSB-PGBD3P0DP91 1061 aa10.52□□□□□ -0.72
VPS41-202ENST00000310301 NGDNQ8NEJ9 315 aaKnown RBP10.52□□□□□ -0.72
VPS41-202ENST00000310301 HECW1Q76N89 1606 aa10.52□□□□□ -0.73
VPS41-202ENST00000310301 EIF4G3O43432 1585 aaKnown RBP10.52□□□□□ -0.73
VPS41-202ENST00000310301 KANK4Q5T7N3 995 aaPredicted RBP10.52□□□□□ -0.73
VPS41-202ENST00000310301 CASC1Q6TDU7 716 aa10.52□□□□□ -0.73
VPS41-202ENST00000310301 TXNDC2Q86VQ3 553 aa10.52□□□□□ -0.73
VPS41-202ENST00000310301 HSP90AB1P08238 724 aaKnown RBP10.52□□□□□ -0.73
VPS41-202ENST00000310301 PROSER2Q86WR7 435 aaPredicted RBP10.52□□□□□ -0.73
VPS41-202ENST00000310301 ASXL2Q76L83 1435 aa10.51□□□□□ -0.73
VPS41-202ENST00000310301 DCAF8L1A6NGE4 600 aa10.51□□□□□ -0.73
VPS41-202ENST00000310301 ARID3AQ99856 593 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 140.4 ms