RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 U2SURPO15042 1029 aaKnown RBP17.47■□□□□ 0.39
CSPG4-201ENST00000308508 SLKQ9H2G2 1235 aaPredicted RBP17.46■□□□□ 0.39
CSPG4-201ENST00000308508 CEP162Q5TB80 1403 aa17.46■□□□□ 0.39
CSPG4-201ENST00000308508 IPO9Q96P70 1041 aaKnown RBP17.45■□□□□ 0.38
CSPG4-201ENST00000308508 IPO8O15397 1037 aaKnown RBP17.45■□□□□ 0.38
CSPG4-201ENST00000308508 EEA1Q15075 1411 aa17.45■□□□□ 0.38
CSPG4-201ENST00000308508 CALD1Q05682 793 aaKnown RBP17.44■□□□□ 0.38
CSPG4-201ENST00000308508 SENP3Q9H4L4 574 aaPredicted RBP17.44■□□□□ 0.38
CSPG4-201ENST00000308508 CALRP27797 417 aaKnown RBP17.42■□□□□ 0.38
CSPG4-201ENST00000308508 RWDD1Q9H446 243 aaPredicted RBP17.42■□□□□ 0.38
CSPG4-201ENST00000308508 TMF1P82094 1093 aa17.41■□□□□ 0.38
CSPG4-201ENST00000308508 POGKQ9P215 609 aa17.4■□□□□ 0.38
CSPG4-201ENST00000308508 TPM3P06753 285 aa17.38■□□□□ 0.37
CSPG4-201ENST00000308508 DDX11L8A8MPP1 907 aa17.37■□□□□ 0.37
CSPG4-201ENST00000308508 PMFBP1Q8TBY8 1022 aa17.37■□□□□ 0.37
CSPG4-201ENST00000308508 PLEKHD1A6NEE1 506 aa17.36■□□□□ 0.37
CSPG4-201ENST00000308508 GPS2Q13227 327 aa17.36■□□□□ 0.37
CSPG4-201ENST00000308508 RCAN3Q9UKA8 241 aa17.36■□□□□ 0.37
CSPG4-201ENST00000308508 VSIG10Q8N0Z9 540 aa17.35■□□□□ 0.37
CSPG4-201ENST00000308508 ISY1Q9ULR0 285 aaKnown RBP17.34■□□□□ 0.37
CSPG4-201ENST00000308508 CHMP7Q8WUX9 453 aaPredicted RBP17.34■□□□□ 0.37
CSPG4-201ENST00000308508 KTN1Q86UP2 1357 aaKnown RBP17.33■□□□□ 0.37
CSPG4-201ENST00000308508 CFDP1Q9UEE9 299 aaPredicted RBP17.32■□□□□ 0.36
CSPG4-201ENST00000308508 GPATCH3Q96I76 525 aa17.32■□□□□ 0.36
CSPG4-201ENST00000308508 TIMELESSQ9UNS1 1208 aa17.32■□□□□ 0.36
CSPG4-201ENST00000308508 HSP90B1P14625 803 aaKnown RBP17.32■□□□□ 0.36
CSPG4-201ENST00000308508 RTF1Q92541 710 aaKnown RBP17.31■□□□□ 0.36
CSPG4-201ENST00000308508 ZNF771Q7L3S4 317 aaPredicted RBP17.31■□□□□ 0.36
CSPG4-201ENST00000308508 ITPRIPQ8IWB1 547 aa17.3■□□□□ 0.36
CSPG4-201ENST00000308508 MFAP1P55081 439 aaKnown RBP17.3■□□□□ 0.36
CSPG4-201ENST00000308508 CEP89Q96ST8 783 aa17.3■□□□□ 0.36
CSPG4-201ENST00000308508 PRM3Q9NNZ6 103 aa17.3■□□□□ 0.36
CSPG4-201ENST00000308508 APBB1O00213 710 aa17.29■□□□□ 0.36
CSPG4-201ENST00000308508 MORC1Q86VD1 984 aa17.29■□□□□ 0.36
CSPG4-201ENST00000308508 TSHZ2Q9NRE2 1034 aa17.29■□□□□ 0.36
CSPG4-201ENST00000308508 CCDC70Q6NSX1 233 aa17.29■□□□□ 0.36
CSPG4-201ENST00000308508 SIN3AQ96ST3 1273 aa17.29■□□□□ 0.36
CSPG4-201ENST00000308508 ST18O60284 1047 aa17.28■□□□□ 0.36
CSPG4-201ENST00000308508 LMOD2Q6P5Q4 547 aa17.28■□□□□ 0.36
CSPG4-201ENST00000308508 SKOR2Q2VWA4 1001 aaPredicted RBP17.27■□□□□ 0.36
CSPG4-201ENST00000308508 TEX35Q5T0J7 233 aa17.27■□□□□ 0.36
CSPG4-201ENST00000308508 MYO15BQ96JP2 1530 aa17.27■□□□□ 0.35
CSPG4-201ENST00000308508 KCNH8Q96L42 1107 aa17.26■□□□□ 0.35
CSPG4-201ENST00000308508 KIF3AQ9Y496 699 aa17.26■□□□□ 0.35
CSPG4-201ENST00000308508 TSR1Q2NL82 804 aaKnown RBP17.25■□□□□ 0.35
CSPG4-201ENST00000308508 GSE1Q14687 1217 aa17.25■□□□□ 0.35
CSPG4-201ENST00000308508 CEP164Q9UPV0 1460 aa17.25■□□□□ 0.35
CSPG4-201ENST00000308508 CHMP4AQ9BY43 222 aa17.24■□□□□ 0.35
CSPG4-201ENST00000308508 KIF16BQ96L93 1317 aa17.24■□□□□ 0.35
CSPG4-201ENST00000308508 RASSF8Q8NHQ8 419 aa17.24■□□□□ 0.35
CSPG4-201ENST00000308508 TRIM6-TRIM34B2RNG4 842 aa17.23■□□□□ 0.35
CSPG4-201ENST00000308508 GOLGA6L19H0YKK7 550 aa17.23■□□□□ 0.35
CSPG4-201ENST00000308508 RALBP1Q15311 655 aa17.23■□□□□ 0.35
CSPG4-201ENST00000308508 HMMRO75330 724 aa17.22■□□□□ 0.35
CSPG4-201ENST00000308508 CREBRFQ8IUR6 639 aa17.22■□□□□ 0.35
CSPG4-201ENST00000308508 DCAF11Q8TEB1 546 aa17.22■□□□□ 0.35
CSPG4-201ENST00000308508 HDAC5Q9UQL6 1122 aa17.21■□□□□ 0.35
CSPG4-201ENST00000308508 TPM1P09493 284 aa17.21■□□□□ 0.34
CSPG4-201ENST00000308508 ATP6V1DQ9Y5K8 247 aa17.21■□□□□ 0.34
CSPG4-201ENST00000308508 TNIKQ9UKE5 1360 aa17.2■□□□□ 0.34
CSPG4-201ENST00000308508 PDE4CQ08493 712 aa17.2■□□□□ 0.34
CSPG4-201ENST00000308508 NOM1Q5C9Z4 860 aaKnown RBP17.2■□□□□ 0.34
CSPG4-201ENST00000308508 CCNB3Q8WWL7 1395 aa17.2■□□□□ 0.34
CSPG4-201ENST00000308508 CCAR2Q8N163 923 aaKnown RBP17.2■□□□□ 0.34
CSPG4-201ENST00000308508 KANK1Q14678 1352 aa17.2■□□□□ 0.34
CSPG4-201ENST00000308508 SRPK2P78362 688 aaKnown RBP17.19■□□□□ 0.34
CSPG4-201ENST00000308508 SF3A1Q15459 793 aaKnown RBP17.18■□□□□ 0.34
CSPG4-201ENST00000308508 TPD52L1Q16890 204 aaPredicted RBP17.18■□□□□ 0.34
CSPG4-201ENST00000308508 DDX49Q9Y6V7 483 aaKnown RBP17.16■□□□□ 0.34
CSPG4-201ENST00000308508 TPM2P07951 284 aa17.16■□□□□ 0.34
CSPG4-201ENST00000308508 CHMP4CQ96CF2 233 aa17.16■□□□□ 0.34
CSPG4-201ENST00000308508 GORABQ5T7V8 394 aa17.16■□□□□ 0.34
CSPG4-201ENST00000308508 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.15■□□□□ 0.34
CSPG4-201ENST00000308508 FOXD4L1Q9NU39 408 aa17.15■□□□□ 0.34
CSPG4-201ENST00000308508 BECN2A8MW95 431 aa17.15■□□□□ 0.34
CSPG4-201ENST00000308508 RRP12Q5JTH9 1297 aaKnown RBP17.15■□□□□ 0.34
CSPG4-201ENST00000308508 PATL2C9JE40 543 aaKnown RBP17.15■□□□□ 0.34
CSPG4-201ENST00000308508 FHAD1B1AJZ9 1412 aa17.14■□□□□ 0.34
CSPG4-201ENST00000308508 PES1O00541 588 aaKnown RBP17.14■□□□□ 0.33
CSPG4-201ENST00000308508 SMC4Q9NTJ3 1288 aa17.14■□□□□ 0.33
CSPG4-201ENST00000308508 HSPA5P11021 654 aaKnown RBP17.14■□□□□ 0.33
CSPG4-201ENST00000308508 SPAG9O60271 1321 aaKnown RBP17.13■□□□□ 0.33
CSPG4-201ENST00000308508 STK31Q9BXU1 1019 aa17.13■□□□□ 0.33
CSPG4-201ENST00000308508 H3BQV1 296 aa17.13■□□□□ 0.33
CSPG4-201ENST00000308508 IFFO2Q5TF58 517 aa17.13■□□□□ 0.33
CSPG4-201ENST00000308508 KIF27Q86VH2 1401 aa17.12■□□□□ 0.33
CSPG4-201ENST00000308508 HDGFL2Q7Z4V5 671 aaPredicted RBP17.12■□□□□ 0.33
CSPG4-201ENST00000308508 HDGFP51858 240 aaKnown RBP17.12■□□□□ 0.33
CSPG4-201ENST00000308508 PHLDB1Q86UU1 1377 aa17.12■□□□□ 0.33
CSPG4-201ENST00000308508 NOL8Q76FK4 1167 aaKnown RBP17.12■□□□□ 0.33
CSPG4-201ENST00000308508 U2AF1L5P0DN76 240 aaPredicted RBP17.12■□□□□ 0.33
CSPG4-201ENST00000308508 U2AF1Q01081 240 aaKnown RBP eCLIP17.12■□□□□ 0.33
CSPG4-201ENST00000308508 PDE3BQ13370 1112 aa17.11■□□□□ 0.33
CSPG4-201ENST00000308508 FAM13BQ9NYF5 915 aa17.11■□□□□ 0.33
CSPG4-201ENST00000308508 ZNF592Q92610 1267 aa17.11■□□□□ 0.33
CSPG4-201ENST00000308508 SETD5Q9C0A6 1442 aa17.11■□□□□ 0.33
CSPG4-201ENST00000308508 MTERF4Q7Z6M4 381 aaKnown RBP17.1■□□□□ 0.33
CSPG4-201ENST00000308508 FAM161AQ3B820 660 aa17.1■□□□□ 0.33
CSPG4-201ENST00000308508 IPO7O95373 1038 aaKnown RBP17.09■□□□□ 0.33
CSPG4-201ENST00000308508 CENPJQ9HC77 1338 aaPredicted RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms