RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 CHMP7Q8WUX9 453 aaPredicted RBP5.16□□□□□ -1.58
USH2A-201ENST00000307340 IPO8O15397 1037 aaKnown RBP5.15□□□□□ -1.58
USH2A-201ENST00000307340 NCAPD3P42695 1498 aa5.15□□□□□ -1.58
USH2A-201ENST00000307340 AQRO60306 1485 aaKnown RBP eCLIP5.15□□□□□ -1.59
USH2A-201ENST00000307340 EHBP1L1Q8N3D4 1523 aa5.15□□□□□ -1.59
USH2A-201ENST00000307340 HMGB1P09429 215 aaKnown RBP5.15□□□□□ -1.59
USH2A-201ENST00000307340 CARMIL1Q5VZK9 1371 aa5.15□□□□□ -1.59
USH2A-201ENST00000307340 MCCP23508 829 aa5.15□□□□□ -1.59
USH2A-201ENST00000307340 DAPK1P53355 1430 aa5.14□□□□□ -1.59
USH2A-201ENST00000307340 LOC105371045A0A1W2PR82 267 aa5.14□□□□□ -1.59
USH2A-201ENST00000307340 CCDC88BA6NC98 1476 aa5.14□□□□□ -1.59
USH2A-201ENST00000307340 ROCK1Q13464 1354 aa5.13□□□□□ -1.59
USH2A-201ENST00000307340 CADPSQ9ULU8 1353 aa5.13□□□□□ -1.59
USH2A-201ENST00000307340 LAS1LQ9Y4W2 734 aaKnown RBP5.13□□□□□ -1.59
USH2A-201ENST00000307340 LMOD3Q0VAK6 560 aa5.13□□□□□ -1.59
USH2A-201ENST00000307340 TMF1P82094 1093 aa5.12□□□□□ -1.59
USH2A-201ENST00000307340 LRRFIP1Q32MZ4 808 aaKnown RBP5.12□□□□□ -1.59
USH2A-201ENST00000307340 CNTLNQ9NXG0 1405 aa5.12□□□□□ -1.59
USH2A-201ENST00000307340 MROH2BQ7Z745 1585 aa5.12□□□□□ -1.59
USH2A-201ENST00000307340 NPM2Q86SE8 214 aaKnown RBP5.12□□□□□ -1.59
USH2A-201ENST00000307340 SLC4A1APQ9BWU0 796 aaKnown RBP5.12□□□□□ -1.59
USH2A-201ENST00000307340 ATP6V1DQ9Y5K8 247 aa5.12□□□□□ -1.59
USH2A-201ENST00000307340 ITGAEP38570 1179 aa5.12□□□□□ -1.59
USH2A-201ENST00000307340 ZNF428Q96B54 188 aa5.12□□□□□ -1.59
USH2A-201ENST00000307340 HNRNPUQ00839 825 aaKnown RBP eCLIP5.12□□□□□ -1.59
USH2A-201ENST00000307340 MYOM3Q5VTT5 1437 aa5.12□□□□□ -1.59
USH2A-201ENST00000307340 MAPK8IP3Q9UPT6 1336 aa5.12□□□□□ -1.59
USH2A-201ENST00000307340 PPP4R2Q9NY27 417 aa5.11□□□□□ -1.59
USH2A-201ENST00000307340 NESP48681 1621 aa5.11□□□□□ -1.59
USH2A-201ENST00000307340 SKOR2Q2VWA4 1001 aaPredicted RBP5.11□□□□□ -1.59
USH2A-201ENST00000307340 RRBP1Q9P2E9 1410 aaKnown RBP5.1□□□□□ -1.59
USH2A-201ENST00000307340 TCERG1O14776 1098 aaKnown RBP5.1□□□□□ -1.59
USH2A-201ENST00000307340 KIF16BQ96L93 1317 aa5.1□□□□□ -1.59
USH2A-201ENST00000307340 CT47B1P0C2W7 299 aaPredicted RBP5.1□□□□□ -1.59
USH2A-201ENST00000307340 CFDP1Q9UEE9 299 aaPredicted RBP5.1□□□□□ -1.59
USH2A-201ENST00000307340 HFM1A2PYH4 1435 aa5.1□□□□□ -1.59
USH2A-201ENST00000307340 DNMBPQ6XZF7 1577 aa5.1□□□□□ -1.59
USH2A-201ENST00000307340 ATAD2BQ9ULI0 1458 aa5.1□□□□□ -1.59
USH2A-201ENST00000307340 MRS2Q9HD23 443 aa5.1□□□□□ -1.59
USH2A-201ENST00000307340 CCDC144AA2RUR9 1427 aa5.1□□□□□ -1.59
USH2A-201ENST00000307340 PLEKHG5O94827 1062 aa5.09□□□□□ -1.59
USH2A-201ENST00000307340 SNAPC4Q5SXM2 1469 aa5.09□□□□□ -1.59
USH2A-201ENST00000307340 ZNF326Q5BKZ1 582 aaKnown RBP5.09□□□□□ -1.59
USH2A-201ENST00000307340 EIF2AK4Q9P2K8 1649 aaKnown RBP5.09□□□□□ -1.59
USH2A-201ENST00000307340 CUX2O14529 1486 aa5.09□□□□□ -1.59
USH2A-201ENST00000307340 CCDC141Q6ZP82 1450 aa5.09□□□□□ -1.6
USH2A-201ENST00000307340 GBP4Q96PP9 640 aa5.09□□□□□ -1.6
USH2A-201ENST00000307340 STAG3Q9UJ98 1225 aa5.09□□□□□ -1.6
USH2A-201ENST00000307340 KIF15Q9NS87 1388 aa5.09□□□□□ -1.6
USH2A-201ENST00000307340 CFTRP13569 1480 aa5.09□□□□□ -1.6
USH2A-201ENST00000307340 ANKRD30BQ9BXX2 1392 aa5.08□□□□□ -1.6
USH2A-201ENST00000307340 GOLGA6L1Q8N7Z2 621 aa5.08□□□□□ -1.6
USH2A-201ENST00000307340 PMFBP1Q8TBY8 1022 aa5.08□□□□□ -1.6
USH2A-201ENST00000307340 EIF4G1Q04637 1599 aaKnown RBP5.08□□□□□ -1.6
USH2A-201ENST00000307340 CNGB1Q14028 1251 aaPredicted RBP5.08□□□□□ -1.6
USH2A-201ENST00000307340 BCL11BQ9C0K0 894 aaPredicted RBP5.07□□□□□ -1.6
USH2A-201ENST00000307340 CASKIN1Q8WXD9 1431 aa5.07□□□□□ -1.6
USH2A-201ENST00000307340 GPATCH3Q96I76 525 aa5.07□□□□□ -1.6
USH2A-201ENST00000307340 FTSJ3Q8IY81 847 aaKnown RBP5.07□□□□□ -1.6
USH2A-201ENST00000307340 TPM4P67936 248 aa5.07□□□□□ -1.6
USH2A-201ENST00000307340 DHX37Q8IY37 1157 aaKnown RBP5.07□□□□□ -1.6
USH2A-201ENST00000307340 PPARGC1BQ86YN6 1023 aaKnown RBP5.07□□□□□ -1.6
USH2A-201ENST00000307340 SOGA1O94964 1423 aa5.07□□□□□ -1.6
USH2A-201ENST00000307340 NAP1L2Q9ULW6 460 aaPredicted RBP5.06□□□□□ -1.6
USH2A-201ENST00000307340 NLRP13Q86W25 1043 aa5.06□□□□□ -1.6
USH2A-201ENST00000307340 MAP7D2Q96T17 732 aa5.06□□□□□ -1.6
USH2A-201ENST00000307340 KIF14Q15058 1648 aa5.06□□□□□ -1.6
USH2A-201ENST00000307340 HSP90B1P14625 803 aaKnown RBP5.06□□□□□ -1.6
USH2A-201ENST00000307340 POLR1AO95602 1720 aaPredicted RBP5.06□□□□□ -1.6
USH2A-201ENST00000307340 ZBED9Q6R2W3 1325 aa5.06□□□□□ -1.6
USH2A-201ENST00000307340 MSNP26038 577 aaKnown RBP5.06□□□□□ -1.6
USH2A-201ENST00000307340 CFAP43Q8NDM7 1665 aa5.05□□□□□ -1.6
USH2A-201ENST00000307340 CFAP74Q9C0B2 1584 aa5.05□□□□□ -1.6
USH2A-201ENST00000307340 DDX11L8A8MPP1 907 aa5.05□□□□□ -1.6
USH2A-201ENST00000307340 HMMRO75330 724 aa5.05□□□□□ -1.6
USH2A-201ENST00000307340 TERF2IPQ9NYB0 399 aa5.05□□□□□ -1.6
USH2A-201ENST00000307340 HMGB3O15347 200 aaKnown RBP5.05□□□□□ -1.6
USH2A-201ENST00000307340 MAGI1Q96QZ7 1491 aaPredicted RBP5.05□□□□□ -1.6
USH2A-201ENST00000307340 KLHL34Q8N239 644 aa5.05□□□□□ -1.6
USH2A-201ENST00000307340 DHX29Q7Z478 1369 aaKnown RBP5.05□□□□□ -1.6
USH2A-201ENST00000307340 GOLGA6L3A6NEY3 463 aa5.05□□□□□ -1.6
USH2A-201ENST00000307340 GAPVD1Q14C86 1478 aa5.05□□□□□ -1.6
USH2A-201ENST00000307340 CAVIN1Q6NZI2 390 aaKnown RBP5.05□□□□□ -1.6
USH2A-201ENST00000307340 TIAM1Q13009 1591 aa5.05□□□□□ -1.6
USH2A-201ENST00000307340 FGD5Q6ZNL6 1462 aa5.04□□□□□ -1.6
USH2A-201ENST00000307340 POLA1P09884 1462 aaPredicted RBP5.04□□□□□ -1.6
USH2A-201ENST00000307340 SPAG9O60271 1321 aaKnown RBP5.04□□□□□ -1.6
USH2A-201ENST00000307340 CARD11Q9BXL7 1154 aa5.04□□□□□ -1.6
USH2A-201ENST00000307340 ADGBQ8N7X0 1667 aa5.04□□□□□ -1.6
USH2A-201ENST00000307340 GRIN2BQ13224 1484 aa5.04□□□□□ -1.6
USH2A-201ENST00000307340 MCM2P49736 904 aa5.04□□□□□ -1.6
USH2A-201ENST00000307340 CGNL1Q0VF96 1302 aa5.03□□□□□ -1.6
USH2A-201ENST00000307340 HSCBQ8IWL3 235 aa5.03□□□□□ -1.6
USH2A-201ENST00000307340 FKBP8Q14318 412 aa5.03□□□□□ -1.6
USH2A-201ENST00000307340 DHX57Q6P158 1386 aaKnown RBP5.03□□□□□ -1.6
USH2A-201ENST00000307340 RWDD1Q9H446 243 aaPredicted RBP5.03□□□□□ -1.6
USH2A-201ENST00000307340 IQGAP2Q13576 1575 aa5.03□□□□□ -1.6
USH2A-201ENST00000307340 SYNJ2O15056 1496 aa5.03□□□□□ -1.6
USH2A-201ENST00000307340 RSPH6AQ9H0K4 717 aa5.03□□□□□ -1.6
USH2A-201ENST00000307340 FANCD2Q9BXW9 1451 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms