RNA–Protein interactions for RNA: ENST00000306085.10

TRIM56-201, Transcript of tripartite motif containing 56, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TRIM56, Length 10,952 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-201ENST00000306085 TSPY4P0CV99 314 aa16.86■□□□□ 0.29
TRIM56-201ENST00000306085 TSPY10P0CW01 314 aa16.86■□□□□ 0.29
TRIM56-201ENST00000306085 NUDCQ9Y266 331 aa16.86■□□□□ 0.29
TRIM56-201ENST00000306085 CCDC34Q96HJ3 373 aa16.86■□□□□ 0.29
TRIM56-201ENST00000306085 VPS53Q5VIR6 699 aa16.85■□□□□ 0.29
TRIM56-201ENST00000306085 CC2D1BQ5T0F9 858 aaKnown RBP16.83■□□□□ 0.28
TRIM56-201ENST00000306085 CDCA8Q53HL2 280 aa16.82■□□□□ 0.28
TRIM56-201ENST00000306085 PHF14O94880 888 aa16.81■□□□□ 0.28
TRIM56-201ENST00000306085 CCDC70Q6NSX1 233 aa16.81■□□□□ 0.28
TRIM56-201ENST00000306085 CFAP44Q96MT7 982 aa16.8■□□□□ 0.28
TRIM56-201ENST00000306085 RRP7BPQ9NSQ0 103 aa16.8■□□□□ 0.28
TRIM56-201ENST00000306085 CSRNP3Q8WYN3 585 aa16.8■□□□□ 0.28
TRIM56-201ENST00000306085 APPP05067 770 aa16.79■□□□□ 0.28
TRIM56-201ENST00000306085 GPS2Q13227 327 aa16.79■□□□□ 0.28
TRIM56-201ENST00000306085 TSR1Q2NL82 804 aaKnown RBP16.79■□□□□ 0.28
TRIM56-201ENST00000306085 TPD52L1Q16890 204 aaPredicted RBP16.77■□□□□ 0.28
TRIM56-201ENST00000306085 SOX12O15370 315 aa16.77■□□□□ 0.28
TRIM56-201ENST00000306085 CSPP1Q1MSJ5 1256 aa16.76■□□□□ 0.27
TRIM56-201ENST00000306085 POGKQ9P215 609 aa16.76■□□□□ 0.27
TRIM56-201ENST00000306085 NOL8Q76FK4 1167 aaKnown RBP16.76■□□□□ 0.27
TRIM56-201ENST00000306085 RSPH6AQ9H0K4 717 aa16.76■□□□□ 0.27
TRIM56-201ENST00000306085 MTUS2Q5JR59 1369 aa16.76■□□□□ 0.27
TRIM56-201ENST00000306085 ZNF330Q9Y3S2 320 aaPredicted RBP16.74■□□□□ 0.27
TRIM56-201ENST00000306085 MAP7D2Q96T17 732 aa16.74■□□□□ 0.27
TRIM56-201ENST00000306085 CALD1Q05682 793 aaKnown RBP16.74■□□□□ 0.27
TRIM56-201ENST00000306085 TEX35Q5T0J7 233 aa16.74■□□□□ 0.27
TRIM56-201ENST00000306085 FOXD4L1Q9NU39 408 aa16.74■□□□□ 0.27
TRIM56-201ENST00000306085 FOXD4L5Q5VV16 416 aaPredicted RBP16.73■□□□□ 0.27
TRIM56-201ENST00000306085 FOXD4L4Q8WXT5 416 aaPredicted RBP16.73■□□□□ 0.27
TRIM56-201ENST00000306085 ZNF592Q92610 1267 aa16.73■□□□□ 0.27
TRIM56-201ENST00000306085 MARCH6O60337 910 aa16.71■□□□□ 0.27
TRIM56-201ENST00000306085 CNKSR2Q8WXI2 1034 aa16.71■□□□□ 0.27
TRIM56-201ENST00000306085 GPATCH3Q96I76 525 aa16.71■□□□□ 0.27
TRIM56-201ENST00000306085 CARD11Q9BXL7 1154 aa16.71■□□□□ 0.27
TRIM56-201ENST00000306085 TRIM6-TRIM34B2RNG4 842 aa16.71■□□□□ 0.27
TRIM56-201ENST00000306085 GORABQ5T7V8 394 aa16.71■□□□□ 0.26
TRIM56-201ENST00000306085 RBM19Q9Y4C8 960 aaKnown RBP16.71■□□□□ 0.26
TRIM56-201ENST00000306085 CHMP3Q9Y3E7 222 aa16.7■□□□□ 0.26
TRIM56-201ENST00000306085 TMX4Q9H1E5 349 aaPredicted RBP16.7■□□□□ 0.26
TRIM56-201ENST00000306085 MFAP1P55081 439 aaKnown RBP16.69■□□□□ 0.26
TRIM56-201ENST00000306085 NOM1Q5C9Z4 860 aaKnown RBP16.69■□□□□ 0.26
TRIM56-201ENST00000306085 TPM1P09493 284 aa16.68■□□□□ 0.26
TRIM56-201ENST00000306085 RTF1Q92541 710 aaKnown RBP16.67■□□□□ 0.26
TRIM56-201ENST00000306085 TPM2P07951 284 aa16.67■□□□□ 0.26
TRIM56-201ENST00000306085 ITPRIPQ8IWB1 547 aa16.67■□□□□ 0.26
TRIM56-201ENST00000306085 SF3A1Q15459 793 aaKnown RBP16.66■□□□□ 0.26
TRIM56-201ENST00000306085 GOLGA6L19H0YKK7 550 aa16.66■□□□□ 0.26
TRIM56-201ENST00000306085 PODXL2Q9NZ53 605 aa16.66■□□□□ 0.26
TRIM56-201ENST00000306085 DCAF1Q9Y4B6 1507 aa16.65■□□□□ 0.26
TRIM56-201ENST00000306085 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.65■□□□□ 0.263e-6■■■■■ 46.4
TRIM56-201ENST00000306085 TIMELESSQ9UNS1 1208 aa16.65■□□□□ 0.26
TRIM56-201ENST00000306085 HMMRO75330 724 aa16.65■□□□□ 0.26
TRIM56-201ENST00000306085 PKNOX2Q96KN3 472 aa16.65■□□□□ 0.26
TRIM56-201ENST00000306085 PLCD4Q9BRC7 762 aa16.65■□□□□ 0.26
TRIM56-201ENST00000306085 KIF16BQ96L93 1317 aa16.64■□□□□ 0.25
TRIM56-201ENST00000306085 RUFY1Q96T51 708 aa16.64■□□□□ 0.25
TRIM56-201ENST00000306085 TCEAL9Q9UHQ7 104 aa16.63■□□□□ 0.25
TRIM56-201ENST00000306085 G3V3G9 751 aa16.63■□□□□ 0.25
TRIM56-201ENST00000306085 DCAF8Q5TAQ9 597 aa16.63■□□□□ 0.25
TRIM56-201ENST00000306085 KCNH8Q96L42 1107 aa16.63■□□□□ 0.25
TRIM56-201ENST00000306085 TOMM22Q9NS69 142 aa16.63■□□□□ 0.25
TRIM56-201ENST00000306085 CCDC191Q8NCU4 936 aa16.62■□□□□ 0.25
TRIM56-201ENST00000306085 PCMTD1Q96MG8 357 aaPredicted RBP16.62■□□□□ 0.25
TRIM56-201ENST00000306085 AK7Q96M32 723 aa16.62■□□□□ 0.25
TRIM56-201ENST00000306085 H3BQV1 296 aa16.61■□□□□ 0.25
TRIM56-201ENST00000306085 IFFO2Q5TF58 517 aa16.61■□□□□ 0.25
TRIM56-201ENST00000306085 FAM13BQ9NYF5 915 aa16.61■□□□□ 0.25
TRIM56-201ENST00000306085 IPO8O15397 1037 aaKnown RBP16.6■□□□□ 0.25
TRIM56-201ENST00000306085 FOXD4L6Q3SYB3 417 aaPredicted RBP16.59■□□□□ 0.25
TRIM56-201ENST00000306085 FOXD4L3Q6VB84 417 aaPredicted RBP16.59■□□□□ 0.25
TRIM56-201ENST00000306085 BECN2A8MW95 431 aa16.58■□□□□ 0.25
TRIM56-201ENST00000306085 IPO7O95373 1038 aaKnown RBP16.58■□□□□ 0.25
TRIM56-201ENST00000306085 CCDC180Q9P1Z9 1646 aa16.58■□□□□ 0.24
TRIM56-201ENST00000306085 RDXP35241 583 aaKnown RBP16.58■□□□□ 0.24
TRIM56-201ENST00000306085 H0YHG0 523 aa16.58■□□□□ 0.24
TRIM56-201ENST00000306085 HOMER1Q86YM7 354 aa16.57■□□□□ 0.24
TRIM56-201ENST00000306085 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.57■□□□□ 0.24
TRIM56-201ENST00000306085 BCL11BQ9C0K0 894 aaPredicted RBP16.57■□□□□ 0.24
TRIM56-201ENST00000306085 DDX11L8A8MPP1 907 aa16.57■□□□□ 0.24
TRIM56-201ENST00000306085 TCERG1O14776 1098 aaKnown RBP16.56■□□□□ 0.24
TRIM56-201ENST00000306085 RWDD1Q9H446 243 aaPredicted RBP16.55■□□□□ 0.24
TRIM56-201ENST00000306085 ST18O60284 1047 aa16.55■□□□□ 0.24
TRIM56-201ENST00000306085 PRKCSHP14314 528 aaPredicted RBP16.55■□□□□ 0.24
TRIM56-201ENST00000306085 NAP1L1P55209 391 aaKnown RBP16.55■□□□□ 0.24
TRIM56-201ENST00000306085 KIF3AQ9Y496 699 aa16.54■□□□□ 0.24
TRIM56-201ENST00000306085 CDR1P51861 262 aa16.54■□□□□ 0.24
TRIM56-201ENST00000306085 HSP90AB3PQ58FF7 597 aa16.54■□□□□ 0.24
TRIM56-201ENST00000306085 SRPK2P78362 688 aaKnown RBP16.53■□□□□ 0.24
TRIM56-201ENST00000306085 MORC1Q86VD1 984 aa16.53■□□□□ 0.24
TRIM56-201ENST00000306085 MCTP1Q6DN14 999 aa16.53■□□□□ 0.24
TRIM56-201ENST00000306085 FRAT2O75474 233 aaPredicted RBP16.52■□□□□ 0.24
TRIM56-201ENST00000306085 DCTN1Q14203 1278 aa16.52■□□□□ 0.23
TRIM56-201ENST00000306085 ABCC9O60706 1549 aa16.52■□□□□ 0.23
TRIM56-201ENST00000306085 CT47A1Q5JQC4 288 aaPredicted RBP16.51■□□□□ 0.23
TRIM56-201ENST00000306085 ODF2Q5BJF6 829 aa16.51■□□□□ 0.23
TRIM56-201ENST00000306085 STK11IPQ8N1F8 1099 aa16.51■□□□□ 0.23
TRIM56-201ENST00000306085 SAFB2Q14151 953 aaKnown RBP eCLIP16.51■□□□□ 0.23
TRIM56-201ENST00000306085 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.51■□□□□ 0.23
TRIM56-201ENST00000306085 CCDC9Q9Y3X0 531 aaKnown RBP16.5■□□□□ 0.23
TRIM56-201ENST00000306085 IPO9Q96P70 1041 aaKnown RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms