RNA–Protein interactions for RNA: ENST00000302085.8

SMAD1-201, Transcript of SMAD family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD1, Length 1,966 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-201ENST00000302085 CDC42BPAQ5VT25 1732 aa32.76■■■□□ 2.84
SMAD1-201ENST00000302085 AKNAQ7Z591 1439 aa32.76■■■□□ 2.83
SMAD1-201ENST00000302085 ZNF777Q9ULD5 760 aaPredicted RBP32.74■■■□□ 2.83
SMAD1-201ENST00000302085 KDM5BQ9UGL1 1544 aa32.7■■■□□ 2.83
SMAD1-201ENST00000302085 GCC2Q8IWJ2 1684 aa32.7■■■□□ 2.82
SMAD1-201ENST00000302085 ROCK1Q13464 1354 aa32.69■■■□□ 2.82
SMAD1-201ENST00000302085 ZCCHC11Q5TAX3 1644 aaKnown RBP32.68■■■□□ 2.82
SMAD1-201ENST00000302085 KDM6BO15054 1643 aa32.61■■■□□ 2.81
SMAD1-201ENST00000302085 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.6■■■□□ 2.81
SMAD1-201ENST00000302085 KCNH8Q96L42 1107 aa32.58■■■□□ 2.81
SMAD1-201ENST00000302085 TTC37Q6PGP7 1564 aa32.57■■■□□ 2.8
SMAD1-201ENST00000302085 CDC42BPBQ9Y5S2 1711 aa32.57■■■□□ 2.8
SMAD1-201ENST00000302085 PREX2Q70Z35 1606 aa32.56■■■□□ 2.8
SMAD1-201ENST00000302085 SIN3AQ96ST3 1273 aa32.54■■■□□ 2.8
SMAD1-201ENST00000302085 CROCC2H7BZ55 1655 aa32.53■■■□□ 2.8
SMAD1-201ENST00000302085 NCOA1Q15788 1441 aa32.51■■■□□ 2.8
SMAD1-201ENST00000302085 ADGRL2O95490 1459 aa32.5■■■□□ 2.79
SMAD1-201ENST00000302085 HNRNPMP52272 730 aaKnown RBP eCLIP32.49■■■□□ 2.79
SMAD1-201ENST00000302085 SAMD9LQ8IVG5 1584 aa32.49■■■□□ 2.79
SMAD1-201ENST00000302085 ZNF316A6NFI3 1004 aaPredicted RBP32.49■■■□□ 2.79
SMAD1-201ENST00000302085 ADGBQ8N7X0 1667 aa32.48■■■□□ 2.79
SMAD1-201ENST00000302085 TRIM52Q96A61 297 aa32.48■■■□□ 2.79
SMAD1-201ENST00000302085 MBD5Q9P267 1494 aa32.48■■■□□ 2.79
SMAD1-201ENST00000302085 NEUROD1Q13562 356 aa32.47■■■□□ 2.79
SMAD1-201ENST00000302085 ARHGEF5Q12774 1597 aa32.45■■■□□ 2.79
SMAD1-201ENST00000302085 SHANK2Q9UPX8 1470 aa32.44■■■□□ 2.78
SMAD1-201ENST00000302085 ANKRD30AQ9BXX3 1397 aa32.44■■■□□ 2.78
SMAD1-201ENST00000302085 ARHGAP5Q13017 1502 aa32.44■■■□□ 2.78
SMAD1-201ENST00000302085 MYO5CQ9NQX4 1742 aa32.44■■■□□ 2.78
SMAD1-201ENST00000302085 ACIN1Q9UKV3 1341 aaKnown RBP32.42■■■□□ 2.78
SMAD1-201ENST00000302085 C9orf84Q5VXU9 1444 aa32.41■■■□□ 2.78
SMAD1-201ENST00000302085 PLCH2O75038 1416 aa32.4■■■□□ 2.78
SMAD1-201ENST00000302085 TSPY4P0CV99 314 aa32.4■■■□□ 2.78
SMAD1-201ENST00000302085 TSPY10P0CW01 314 aa32.4■■■□□ 2.78
SMAD1-201ENST00000302085 DENND4BO75064 1496 aaPredicted RBP32.4■■■□□ 2.78
SMAD1-201ENST00000302085 WDR7Q9Y4E6 1490 aa32.38■■■□□ 2.77
SMAD1-201ENST00000302085 RSPH4AQ5TD94 716 aa32.38■■■□□ 2.77
SMAD1-201ENST00000302085 MPHOSPH9Q99550 1183 aa32.38■■■□□ 2.77
SMAD1-201ENST00000302085 TIMELESSQ9UNS1 1208 aa32.38■■■□□ 2.77
SMAD1-201ENST00000302085 CCDC141Q6ZP82 1450 aa32.35■■■□□ 2.77
SMAD1-201ENST00000302085 SYCP2Q9BX26 1530 aa32.32■■■□□ 2.77
SMAD1-201ENST00000302085 KIAA1107Q9UPP5 1409 aa32.32■■■□□ 2.76
SMAD1-201ENST00000302085 EFCAB2Q5VUJ9 269 aa32.31■■■□□ 2.76
SMAD1-201ENST00000302085 PLEKHH2Q8IVE3 1493 aa32.31■■■□□ 2.76
SMAD1-201ENST00000302085 ASXL2Q76L83 1435 aa32.3■■■□□ 2.76
SMAD1-201ENST00000302085 ANKRD50Q9ULJ7 1429 aa32.28■■■□□ 2.76
SMAD1-201ENST00000302085 ARHGEF12Q9NZN5 1544 aa32.27■■■□□ 2.76
SMAD1-201ENST00000302085 NPM1P06748 294 aaKnown RBP eCLIP32.26■■■□□ 2.75
SMAD1-201ENST00000302085 DIEXFQ68CQ4 756 aaKnown RBP32.24■■■□□ 2.75
SMAD1-201ENST00000302085 KIF15Q9NS87 1388 aa32.23■■■□□ 2.75
SMAD1-201ENST00000302085 ARAP3Q8WWN8 1544 aa32.23■■■□□ 2.75
SMAD1-201ENST00000302085 PZPP20742 1482 aa32.21■■■□□ 2.75
SMAD1-201ENST00000302085 MAST1Q9Y2H9 1570 aa32.21■■■□□ 2.75
SMAD1-201ENST00000302085 PPP1R15AO75807 674 aaPredicted RBP32.21■■■□□ 2.75
SMAD1-201ENST00000302085 FOXD1Q16676 465 aa32.21■■■□□ 2.75
SMAD1-201ENST00000302085 SLC4A1APQ9BWU0 796 aaKnown RBP32.21■■■□□ 2.75
SMAD1-201ENST00000302085 ABCA9Q8IUA7 1624 aa32.2■■■□□ 2.75
SMAD1-201ENST00000302085 TONSLQ96HA7 1378 aa32.18■■■□□ 2.74
SMAD1-201ENST00000302085 ABCC1P33527 1531 aa32.17■■■□□ 2.74
SMAD1-201ENST00000302085 ANKRD30BQ9BXX2 1392 aa32.15■■■□□ 2.74
SMAD1-201ENST00000302085 TRAPPC8Q9Y2L5 1435 aa32.12■■■□□ 2.73
SMAD1-201ENST00000302085 FANCAO15360 1455 aa32.08■■■□□ 2.73
SMAD1-201ENST00000302085 NUP155O75694 1391 aa32.07■■■□□ 2.73
SMAD1-201ENST00000302085 PLXNC1O60486 1568 aa32.07■■■□□ 2.72
SMAD1-201ENST00000302085 KDM5DQ9BY66 1539 aa32.04■■■□□ 2.72
SMAD1-201ENST00000302085 PKD2Q13563 968 aa32.03■■■□□ 2.72
SMAD1-201ENST00000302085 CYB5RLQ6IPT4 315 aa32.03■■■□□ 2.72
SMAD1-201ENST00000302085 AFAP1Q8N556 730 aa32.02■■■□□ 2.72
SMAD1-201ENST00000302085 RIMBP3CA6NJZ7 1639 aa32.01■■■□□ 2.72
SMAD1-201ENST00000302085 RIMBP3BA6NNM3 1639 aa32.01■■■□□ 2.72
SMAD1-201ENST00000302085 RIMBP3Q9UFD9 1639 aa32.01■■■□□ 2.72
SMAD1-201ENST00000302085 RPRD2Q5VT52 1461 aaKnown RBP31.98■■■□□ 2.71
SMAD1-201ENST00000302085 SPAG9O60271 1321 aaKnown RBP31.97■■■□□ 2.71
SMAD1-201ENST00000302085 DUOX2Q9NRD8 1548 aa31.97■■■□□ 2.71
SMAD1-201ENST00000302085 RTEL1-TNFRSF6BF6WH68 1400 aa31.95■■■□□ 2.71
SMAD1-201ENST00000302085 ADGRL1O94910 1474 aa31.95■■■□□ 2.7
SMAD1-201ENST00000302085 CD109Q6YHK3 1445 aa31.94■■■□□ 2.7
SMAD1-201ENST00000302085 SCAPERQ9BY12 1400 aa31.94■■■□□ 2.7
SMAD1-201ENST00000302085 L3MBTL2Q969R5 705 aa31.93■■■□□ 2.7
SMAD1-201ENST00000302085 ERBINQ96RT1 1412 aa31.9■■■□□ 2.7
SMAD1-201ENST00000302085 UNC13BO14795 1591 aa31.9■■■□□ 2.7
SMAD1-201ENST00000302085 ZFYVE16Q7Z3T8 1539 aa31.89■■■□□ 2.7
SMAD1-201ENST00000302085 FAM135AQ9P2D6 1515 aa31.88■■■□□ 2.69
SMAD1-201ENST00000302085 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.84■■■□□ 2.69
SMAD1-201ENST00000302085 TEX14Q8IWB6 1497 aa31.84■■■□□ 2.69
SMAD1-201ENST00000302085 INO80Q9ULG1 1556 aaPredicted RBP31.82■■■□□ 2.68
SMAD1-201ENST00000302085 ATP7AQ04656 1500 aa31.82■■■□□ 2.68
SMAD1-201ENST00000302085 MAGI2Q86UL8 1455 aa31.79■■■□□ 2.68
SMAD1-201ENST00000302085 CFAP74Q9C0B2 1584 aa31.78■■■□□ 2.68
SMAD1-201ENST00000302085 IQGAP3Q86VI3 1631 aa31.77■■■□□ 2.68
SMAD1-201ENST00000302085 MIER1Q8N108 512 aa31.74■■■□□ 2.67
SMAD1-201ENST00000302085 MYT1LQ9UL68 1186 aa31.74■■■□□ 2.67
SMAD1-201ENST00000302085 ZNF518AQ6AHZ1 1483 aa31.73■■■□□ 2.67
SMAD1-201ENST00000302085 HIRIP3Q9BW71 556 aaPredicted RBP31.72■■■□□ 2.67
SMAD1-201ENST00000302085 NBPF8Q3BBV2 869 aa31.72■■■□□ 2.67
SMAD1-201ENST00000302085 NEO1Q92859 1461 aa31.7■■■□□ 2.66
SMAD1-201ENST00000302085 POGZQ7Z3K3 1410 aa31.69■■■□□ 2.66
SMAD1-201ENST00000302085 KIDINS220Q9ULH0 1771 aa31.69■■■□□ 2.66
SMAD1-201ENST00000302085 GLI2P10070 1586 aa31.69■■■□□ 2.66
SMAD1-201ENST00000302085 DHX29Q7Z478 1369 aaKnown RBP31.68■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms