RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 RTF1Q92541 710 aaKnown RBP17.29■□□□□ 0.36
CHRFAM7A-201ENST00000299847 MSNP26038 577 aaKnown RBP17.29■□□□□ 0.36
CHRFAM7A-201ENST00000299847 CEP164Q9UPV0 1460 aa17.29■□□□□ 0.36
CHRFAM7A-201ENST00000299847 GNL2Q13823 731 aaKnown RBP17.28■□□□□ 0.36
CHRFAM7A-201ENST00000299847 PNNQ9H307 717 aaKnown RBP17.28■□□□□ 0.36
CHRFAM7A-201ENST00000299847 TNIKQ9UKE5 1360 aa17.28■□□□□ 0.36
CHRFAM7A-201ENST00000299847 MS4A1P11836 297 aa17.28■□□□□ 0.36
CHRFAM7A-201ENST00000299847 SLKQ9H2G2 1235 aaPredicted RBP17.28■□□□□ 0.36
CHRFAM7A-201ENST00000299847 ITPRIPQ8IWB1 547 aa17.28■□□□□ 0.36
CHRFAM7A-201ENST00000299847 MCCP23508 829 aa17.27■□□□□ 0.36
CHRFAM7A-201ENST00000299847 NUTM2DQ5VT03 806 aaPredicted RBP17.27■□□□□ 0.35
CHRFAM7A-201ENST00000299847 RBM19Q9Y4C8 960 aaKnown RBP17.27■□□□□ 0.35
CHRFAM7A-201ENST00000299847 CHMP4BQ9H444 224 aaKnown RBP17.26■□□□□ 0.35
CHRFAM7A-201ENST00000299847 FOXD4L1Q9NU39 408 aa17.26■□□□□ 0.35
CHRFAM7A-201ENST00000299847 KANK1Q14678 1352 aa17.24■□□□□ 0.35
CHRFAM7A-201ENST00000299847 EEA1Q15075 1411 aa17.24■□□□□ 0.35
CHRFAM7A-201ENST00000299847 CHAF1AQ13111 956 aaPredicted RBP17.24■□□□□ 0.35
CHRFAM7A-201ENST00000299847 NOL8Q76FK4 1167 aaKnown RBP17.24■□□□□ 0.35
CHRFAM7A-201ENST00000299847 CCDC146Q8IYE0 955 aa17.23■□□□□ 0.35
CHRFAM7A-201ENST00000299847 PKD2Q13563 968 aa17.22■□□□□ 0.35
CHRFAM7A-201ENST00000299847 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.22■□□□□ 0.35
CHRFAM7A-201ENST00000299847 PDE4CQ08493 712 aa17.22■□□□□ 0.35
CHRFAM7A-201ENST00000299847 U2AF1L5P0DN76 240 aaPredicted RBP17.22■□□□□ 0.35
CHRFAM7A-201ENST00000299847 U2AF1Q01081 240 aaKnown RBP eCLIP17.22■□□□□ 0.35
CHRFAM7A-201ENST00000299847 RB1CC1Q8TDY2 1594 aa17.21■□□□□ 0.35
CHRFAM7A-201ENST00000299847 NRDCO43847 1150 aa17.21■□□□□ 0.35
CHRFAM7A-201ENST00000299847 CSB-PGBD3P0DP91 1061 aa17.21■□□□□ 0.35
CHRFAM7A-201ENST00000299847 MFAP1P55081 439 aaKnown RBP17.2■□□□□ 0.34
CHRFAM7A-201ENST00000299847 CHMP3Q9Y3E7 222 aa17.2■□□□□ 0.34
CHRFAM7A-201ENST00000299847 KTN1Q86UP2 1357 aaKnown RBP17.19■□□□□ 0.34
CHRFAM7A-201ENST00000299847 HSP90B1P14625 803 aaKnown RBP17.18■□□□□ 0.34
CHRFAM7A-201ENST00000299847 ANO8Q9HCE9 1232 aaPredicted RBP17.18■□□□□ 0.34
CHRFAM7A-201ENST00000299847 KIAA1211Q6ZU35 1233 aa17.18■□□□□ 0.34
CHRFAM7A-201ENST00000299847 ROCK2O75116 1388 aaKnown RBP17.18■□□□□ 0.34
CHRFAM7A-201ENST00000299847 SOGA1O94964 1423 aa17.18■□□□□ 0.34
CHRFAM7A-201ENST00000299847 L1TD1Q5T7N2 865 aaKnown RBP17.17■□□□□ 0.34
CHRFAM7A-201ENST00000299847 HDGFL2Q7Z4V5 671 aaPredicted RBP17.17■□□□□ 0.34
CHRFAM7A-201ENST00000299847 RCAN3Q9UKA8 241 aa17.17■□□□□ 0.34
CHRFAM7A-201ENST00000299847 KANK4Q5T7N3 995 aaPredicted RBP17.17■□□□□ 0.34
CHRFAM7A-201ENST00000299847 FOXD4L5Q5VV16 416 aaPredicted RBP17.16■□□□□ 0.34
CHRFAM7A-201ENST00000299847 FOXD4L4Q8WXT5 416 aaPredicted RBP17.16■□□□□ 0.34
CHRFAM7A-201ENST00000299847 CLUAP1Q96AJ1 413 aa17.15■□□□□ 0.34
CHRFAM7A-201ENST00000299847 TRIM6-TRIM34B2RNG4 842 aa17.14■□□□□ 0.33
CHRFAM7A-201ENST00000299847 NUTM2FA1L443 756 aa17.14■□□□□ 0.33
CHRFAM7A-201ENST00000299847 SLC4A10Q6U841 1118 aa17.14■□□□□ 0.33
CHRFAM7A-201ENST00000299847 CUX2O14529 1486 aa17.13■□□□□ 0.33
CHRFAM7A-201ENST00000299847 SETD5Q9C0A6 1442 aa17.13■□□□□ 0.33
CHRFAM7A-201ENST00000299847 CCDC9Q9Y3X0 531 aaKnown RBP17.13■□□□□ 0.33
CHRFAM7A-201ENST00000299847 CREBRFQ8IUR6 639 aa17.12■□□□□ 0.33
CHRFAM7A-201ENST00000299847 CARMIL1Q5VZK9 1371 aa17.11■□□□□ 0.33
CHRFAM7A-201ENST00000299847 LTV1Q96GA3 475 aaPredicted RBP17.1■□□□□ 0.33
CHRFAM7A-201ENST00000299847 ARHGAP35Q9NRY4 1499 aa17.1■□□□□ 0.33
CHRFAM7A-201ENST00000299847 IPO8O15397 1037 aaKnown RBP17.1■□□□□ 0.33
CHRFAM7A-201ENST00000299847 SMC4Q9NTJ3 1288 aa17.1■□□□□ 0.33
CHRFAM7A-201ENST00000299847 CCER2I3L3R5 266 aa17.09■□□□□ 0.33
CHRFAM7A-201ENST00000299847 HDGFP51858 240 aaKnown RBP17.09■□□□□ 0.33
CHRFAM7A-201ENST00000299847 GORABQ5T7V8 394 aa17.09■□□□□ 0.33
CHRFAM7A-201ENST00000299847 RWDD1Q9H446 243 aaPredicted RBP17.08■□□□□ 0.32
CHRFAM7A-201ENST00000299847 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.08■□□□□ 0.32
CHRFAM7A-201ENST00000299847 GBP4Q96PP9 640 aa17.08■□□□□ 0.32
CHRFAM7A-201ENST00000299847 NOC3LQ8WTT2 800 aaKnown RBP17.07■□□□□ 0.32
CHRFAM7A-201ENST00000299847 RRP7AQ9Y3A4 280 aaKnown RBP17.07■□□□□ 0.32
CHRFAM7A-201ENST00000299847 FHAD1B1AJZ9 1412 aa17.07■□□□□ 0.32
CHRFAM7A-201ENST00000299847 MPHOSPH9Q99550 1183 aa17.06■□□□□ 0.32
CHRFAM7A-201ENST00000299847 TAF7LQ5H9L4 462 aa17.06■□□□□ 0.32
CHRFAM7A-201ENST00000299847 ABCC8Q09428 1581 aa17.05■□□□□ 0.32
CHRFAM7A-201ENST00000299847 KIAA2012Q0VF49 1180 aa17.04■□□□□ 0.32
CHRFAM7A-201ENST00000299847 NUP155O75694 1391 aa17.04■□□□□ 0.32
CHRFAM7A-201ENST00000299847 FOXD4L6Q3SYB3 417 aaPredicted RBP17.03■□□□□ 0.32
CHRFAM7A-201ENST00000299847 FOXD4L3Q6VB84 417 aaPredicted RBP17.03■□□□□ 0.32
CHRFAM7A-201ENST00000299847 RAB3GAP2Q9H2M9 1393 aa17.03■□□□□ 0.32
CHRFAM7A-201ENST00000299847 HNRNPMP52272 730 aaKnown RBP eCLIP17.02■□□□□ 0.32
CHRFAM7A-201ENST00000299847 STK31Q9BXU1 1019 aa17.02■□□□□ 0.31
CHRFAM7A-201ENST00000299847 SLC4A3P48751 1232 aa17.01■□□□□ 0.31
CHRFAM7A-201ENST00000299847 PRM3Q9NNZ6 103 aa17.01■□□□□ 0.31
CHRFAM7A-201ENST00000299847 TOMM22Q9NS69 142 aa17■□□□□ 0.31
CHRFAM7A-201ENST00000299847 BCL2L13Q9BXK5 485 aa17■□□□□ 0.31
CHRFAM7A-201ENST00000299847 RASSF8Q8NHQ8 419 aa16.99■□□□□ 0.31
CHRFAM7A-201ENST00000299847 SPAG9O60271 1321 aaKnown RBP16.99■□□□□ 0.31
CHRFAM7A-201ENST00000299847 PLIN1O60240 522 aa16.99■□□□□ 0.31
CHRFAM7A-201ENST00000299847 ELL2O00472 640 aaPredicted RBP16.98■□□□□ 0.31
CHRFAM7A-201ENST00000299847 PMFBP1Q8TBY8 1022 aa16.98■□□□□ 0.31
CHRFAM7A-201ENST00000299847 GOLGA6L3A6NEY3 463 aa16.98■□□□□ 0.31
CHRFAM7A-201ENST00000299847 TSHZ2Q9NRE2 1034 aa16.98■□□□□ 0.31
CHRFAM7A-201ENST00000299847 RALBP1Q15311 655 aa16.98■□□□□ 0.31
CHRFAM7A-201ENST00000299847 CECR2Q9BXF3 1484 aa16.97■□□□□ 0.31
CHRFAM7A-201ENST00000299847 KIF3BO15066 747 aa16.97■□□□□ 0.31
CHRFAM7A-201ENST00000299847 CALD1Q05682 793 aaKnown RBP16.96■□□□□ 0.31
CHRFAM7A-201ENST00000299847 VPS53Q5VIR6 699 aa16.96■□□□□ 0.31
CHRFAM7A-201ENST00000299847 TCERG1O14776 1098 aaKnown RBP16.96■□□□□ 0.31
CHRFAM7A-201ENST00000299847 GPATCH3Q96I76 525 aa16.96■□□□□ 0.31
CHRFAM7A-201ENST00000299847 G3V3G9 751 aa16.95■□□□□ 0.3
CHRFAM7A-201ENST00000299847 DCAF8Q5TAQ9 597 aa16.95■□□□□ 0.3
CHRFAM7A-201ENST00000299847 NGDNQ8NEJ9 315 aaKnown RBP16.95■□□□□ 0.3
CHRFAM7A-201ENST00000299847 CFAP44Q96MT7 982 aa16.95■□□□□ 0.3
CHRFAM7A-201ENST00000299847 TRAK1Q9UPV9 953 aa16.95■□□□□ 0.3
CHRFAM7A-201ENST00000299847 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.94■□□□□ 0.3
CHRFAM7A-201ENST00000299847 AMPHP49418 695 aa16.94■□□□□ 0.3
CHRFAM7A-201ENST00000299847 CENPJQ9HC77 1338 aaPredicted RBP16.94■□□□□ 0.3
CHRFAM7A-201ENST00000299847 RILPL2Q969X0 211 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms