RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 FYCO1Q9BQS8 1478 aa12.65□□□□□ -0.38
COL6A3-201ENST00000295550 HMGXB3Q12766 1538 aa12.65□□□□□ -0.38
COL6A3-201ENST00000295550 LRRC9Q6ZRR7 1453 aa12.65□□□□□ -0.39
COL6A3-201ENST00000295550 EFCAB5A4FU69 1503 aa12.65□□□□□ -0.39
COL6A3-201ENST00000295550 ROCK2O75116 1388 aaKnown RBP12.64□□□□□ -0.39
COL6A3-201ENST00000295550 RGS3P49796 1198 aa12.64□□□□□ -0.39
COL6A3-201ENST00000295550 DRC7Q8IY82 874 aa12.64□□□□□ -0.39
COL6A3-201ENST00000295550 A0A0G2JS52 829 aa12.64□□□□□ -0.39
COL6A3-201ENST00000295550 RRBP1Q9P2E9 1410 aaKnown RBP12.64□□□□□ -0.39
COL6A3-201ENST00000295550 ANKRD30AQ9BXX3 1397 aa12.64□□□□□ -0.39
COL6A3-201ENST00000295550 CFAP53Q96M91 514 aa12.63□□□□□ -0.39
COL6A3-201ENST00000295550 PRDM2Q13029 1718 aa12.63□□□□□ -0.39
COL6A3-201ENST00000295550 TNNT3P45378 269 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-201ENST00000295550 ARAP1Q96P48 1450 aa12.63□□□□□ -0.39
COL6A3-201ENST00000295550 RGL3Q3MIN7 710 aa12.63□□□□□ -0.39
COL6A3-201ENST00000295550 HSCBQ8IWL3 235 aa12.63□□□□□ -0.39
COL6A3-201ENST00000295550 TIAM1Q13009 1591 aa12.62□□□□□ -0.39
COL6A3-201ENST00000295550 B4GALNT3Q6L9W6 998 aa12.62□□□□□ -0.39
COL6A3-201ENST00000295550 MPHOSPH9Q99550 1183 aa12.62□□□□□ -0.39
COL6A3-201ENST00000295550 KANK1Q14678 1352 aa12.61□□□□□ -0.39
COL6A3-201ENST00000295550 TSHZ2Q9NRE2 1034 aa12.61□□□□□ -0.39
COL6A3-201ENST00000295550 FGD6Q6ZV73 1430 aa12.61□□□□□ -0.39
COL6A3-201ENST00000295550 RALBP1Q15311 655 aa12.6□□□□□ -0.39
COL6A3-201ENST00000295550 GOLGA6L4A6NEF3 574 aa12.6□□□□□ -0.39
COL6A3-201ENST00000295550 TMF1P82094 1093 aa12.6□□□□□ -0.39
COL6A3-201ENST00000295550 FGD1P98174 961 aa12.6□□□□□ -0.39
COL6A3-201ENST00000295550 TAOK2Q9UL54 1235 aa12.59□□□□□ -0.39
COL6A3-201ENST00000295550 SUPT6HQ7KZ85 1726 aaKnown RBP12.59□□□□□ -0.39
COL6A3-201ENST00000295550 PLPPR3Q6T4P5 718 aa12.59□□□□□ -0.39
COL6A3-201ENST00000295550 MYOM3Q5VTT5 1437 aa12.59□□□□□ -0.39
COL6A3-201ENST00000295550 CASKIN1Q8WXD9 1431 aa12.59□□□□□ -0.39
COL6A3-201ENST00000295550 TDRD9Q8NDG6 1382 aaKnown RBP12.59□□□□□ -0.39
COL6A3-201ENST00000295550 NCAPD3P42695 1498 aa12.59□□□□□ -0.39
COL6A3-201ENST00000295550 DCAF11Q8TEB1 546 aa12.58□□□□□ -0.39
COL6A3-201ENST00000295550 KCNH8Q96L42 1107 aa12.58□□□□□ -0.4
COL6A3-201ENST00000295550 PKD2Q13563 968 aa12.58□□□□□ -0.4
COL6A3-201ENST00000295550 NOC3LQ8WTT2 800 aaKnown RBP12.57□□□□□ -0.4
COL6A3-201ENST00000295550 EIF3AQ14152 1382 aaKnown RBP12.57□□□□□ -0.4
COL6A3-201ENST00000295550 CC2D1BQ5T0F9 858 aaKnown RBP12.57□□□□□ -0.4
COL6A3-201ENST00000295550 UACAQ9BZF9 1416 aa12.56□□□□□ -0.4
COL6A3-201ENST00000295550 SENP3-EIF4A1A0A087X0R7 540 aa12.56□□□□□ -0.4
COL6A3-201ENST00000295550 KIAA2012Q0VF49 1180 aa12.56□□□□□ -0.4
COL6A3-201ENST00000295550 EHBP1L1Q8N3D4 1523 aa12.56□□□□□ -0.4
COL6A3-201ENST00000295550 FOXD1Q16676 465 aa12.55□□□□□ -0.4
COL6A3-201ENST00000295550 NAP1L2Q9ULW6 460 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-201ENST00000295550 NUP155O75694 1391 aa12.55□□□□□ -0.4
COL6A3-201ENST00000295550 HECW1Q76N89 1606 aa12.55□□□□□ -0.4
COL6A3-201ENST00000295550 BIVM-ERCC5R4GMW8 1640 aa12.55□□□□□ -0.4
COL6A3-201ENST00000295550 ZBTB7CA1YPR0 619 aa12.55□□□□□ -0.4
COL6A3-201ENST00000295550 KCNJ4P48050 445 aa12.55□□□□□ -0.4
COL6A3-201ENST00000295550 PNNQ9H307 717 aaKnown RBP12.54□□□□□ -0.4
COL6A3-201ENST00000295550 KIF15Q9NS87 1388 aa12.54□□□□□ -0.4
COL6A3-201ENST00000295550 GAPVD1Q14C86 1478 aa12.54□□□□□ -0.4
COL6A3-201ENST00000295550 PHLDB1Q86UU1 1377 aa12.54□□□□□ -0.4
COL6A3-201ENST00000295550 CFTRP13569 1480 aa12.53□□□□□ -0.4
COL6A3-201ENST00000295550 PRXQ9BXM0 1461 aa12.53□□□□□ -0.4
COL6A3-201ENST00000295550 IGF1RP08069 1367 aa12.53□□□□□ -0.4
COL6A3-201ENST00000295550 CLSTN1O94985 981 aa12.53□□□□□ -0.4
COL6A3-201ENST00000295550 PEG3Q9GZU2 1588 aa12.53□□□□□ -0.4
COL6A3-201ENST00000295550 SPRYD3Q8NCJ5 442 aa12.53□□□□□ -0.4
COL6A3-201ENST00000295550 CUL7Q14999 1698 aa12.52□□□□□ -0.4
COL6A3-201ENST00000295550 ZBED9Q6R2W3 1325 aa12.52□□□□□ -0.41
COL6A3-201ENST00000295550 C14orf37Q86TY3 774 aa12.52□□□□□ -0.41
COL6A3-201ENST00000295550 MS4A1P11836 297 aa12.52□□□□□ -0.41
COL6A3-201ENST00000295550 NUDCQ9Y266 331 aa12.52□□□□□ -0.41
COL6A3-201ENST00000295550 L3MBTL2Q969R5 705 aa12.51□□□□□ -0.41
COL6A3-201ENST00000295550 OS9Q13438 667 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-201ENST00000295550 NCOA2Q15596 1464 aa12.5□□□□□ -0.41
COL6A3-201ENST00000295550 PTMSP20962 102 aa12.5□□□□□ -0.41
COL6A3-201ENST00000295550 GOLGA6L1Q8N7Z2 621 aa12.5□□□□□ -0.41
COL6A3-201ENST00000295550 CHMP4BQ9H444 224 aaKnown RBP12.5□□□□□ -0.41
COL6A3-201ENST00000295550 MAPK8IP3Q9UPT6 1336 aa12.5□□□□□ -0.41
COL6A3-201ENST00000295550 RCAN3Q9UKA8 241 aa12.5□□□□□ -0.41
COL6A3-201ENST00000295550 TCERG1O14776 1098 aaKnown RBP12.49□□□□□ -0.41
COL6A3-201ENST00000295550 FRAT1Q92837 279 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-201ENST00000295550 GBP4Q96PP9 640 aa12.48□□□□□ -0.41
COL6A3-201ENST00000295550 CNTLNQ9NXG0 1405 aa12.48□□□□□ -0.41
COL6A3-201ENST00000295550 USP47Q96K76 1375 aa12.48□□□□□ -0.41
COL6A3-201ENST00000295550 MCCP23508 829 aa12.48□□□□□ -0.41
COL6A3-201ENST00000295550 RAD54L2Q9Y4B4 1467 aa12.47□□□□□ -0.41
COL6A3-201ENST00000295550 NCBP3Q53F19 620 aaKnown RBP12.47□□□□□ -0.41
COL6A3-201ENST00000295550 PCF11O94913 1555 aaKnown RBP12.47□□□□□ -0.41
COL6A3-201ENST00000295550 KAT6BQ8WYB5 2073 aa12.47□□□□□ -0.41
COL6A3-201ENST00000295550 GZF1Q9H116 711 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-201ENST00000295550 DNMBPQ6XZF7 1577 aa12.47□□□□□ -0.41
COL6A3-201ENST00000295550 PLEKHG5O94827 1062 aa12.46□□□□□ -0.41
COL6A3-201ENST00000295550 PDE3BQ13370 1112 aa12.46□□□□□ -0.41
COL6A3-201ENST00000295550 GNL2Q13823 731 aaKnown RBP12.46□□□□□ -0.42
COL6A3-201ENST00000295550 MYBBP1AQ9BQG0 1328 aaKnown RBP12.45□□□□□ -0.42
COL6A3-201ENST00000295550 HSP90AA2PQ14568 343 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-201ENST00000295550 CCDC144AA2RUR9 1427 aa12.45□□□□□ -0.42
COL6A3-201ENST00000295550 NLRP13Q86W25 1043 aa12.45□□□□□ -0.42
COL6A3-201ENST00000295550 MAP3K1Q13233 1512 aa12.44□□□□□ -0.42
COL6A3-201ENST00000295550 SENP3Q9H4L4 574 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-201ENST00000295550 CC2D2AQ9P2K1 1620 aa12.44□□□□□ -0.42
COL6A3-201ENST00000295550 SYAP1Q96A49 352 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-201ENST00000295550 BICRAQ9NZM4 1560 aa12.44□□□□□ -0.42
COL6A3-201ENST00000295550 SETQ01105 290 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-201ENST00000295550 NEUROD2Q15784 382 aa12.43□□□□□ -0.42
COL6A3-201ENST00000295550 IPO9Q96P70 1041 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms