RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ABCC5O15440 1437 aa26.03■■□□□ 1.76
SHKBP1-201ENST00000291842 KDM5BQ9UGL1 1544 aa26.02■■□□□ 1.76
SHKBP1-201ENST00000291842 PELP1Q8IZL8 1130 aaKnown RBP26.02■■□□□ 1.76
SHKBP1-201ENST00000291842 TROQ12816 1431 aaPredicted RBP26■■□□□ 1.75
SHKBP1-201ENST00000291842 NUP160Q12769 1436 aa25.99■■□□□ 1.75
SHKBP1-201ENST00000291842 CFDP1Q9UEE9 299 aaPredicted RBP25.99■■□□□ 1.75
SHKBP1-201ENST00000291842 ZNF777Q9ULD5 760 aaPredicted RBP25.99■■□□□ 1.75
SHKBP1-201ENST00000291842 CARMIL2Q6F5E8 1435 aa25.99■■□□□ 1.75
SHKBP1-201ENST00000291842 DNMT1P26358 1616 aaKnown RBP25.98■■□□□ 1.75
SHKBP1-201ENST00000291842 ROCK1Q13464 1354 aa25.96■■□□□ 1.75
SHKBP1-201ENST00000291842 KIF14Q15058 1648 aa25.93■■□□□ 1.74
SHKBP1-201ENST00000291842 ANP32CO43423 234 aa25.91■■□□□ 1.74
SHKBP1-201ENST00000291842 CAMSAP2Q08AD1 1489 aa25.91■■□□□ 1.74
SHKBP1-201ENST00000291842 L3MBTL2Q969R5 705 aa25.91■■□□□ 1.74
SHKBP1-201ENST00000291842 GPATCH8Q9UKJ3 1502 aaKnown RBP25.91■■□□□ 1.74
SHKBP1-201ENST00000291842 SLC4A1APQ9BWU0 796 aaKnown RBP25.89■■□□□ 1.73
SHKBP1-201ENST00000291842 HSPA5P11021 654 aaKnown RBP25.87■■□□□ 1.73
SHKBP1-201ENST00000291842 PLEKHD1A6NEE1 506 aa25.84■■□□□ 1.73
SHKBP1-201ENST00000291842 ANKRD30BQ9BXX2 1392 aa25.84■■□□□ 1.73
SHKBP1-201ENST00000291842 ITSN2Q9NZM3 1697 aa25.83■■□□□ 1.73
SHKBP1-201ENST00000291842 SUPT16HQ9Y5B9 1047 aaKnown RBP25.81■■□□□ 1.72
SHKBP1-201ENST00000291842 NCOA1Q15788 1441 aa25.81■■□□□ 1.72
SHKBP1-201ENST00000291842 ADCY10Q96PN6 1610 aa25.81■■□□□ 1.72
SHKBP1-201ENST00000291842 ATP10BO94823 1461 aa25.81■■□□□ 1.72
SHKBP1-201ENST00000291842 ABCA8O94911 1581 aa25.8■■□□□ 1.72
SHKBP1-201ENST00000291842 CCER2I3L3R5 266 aa25.79■■□□□ 1.72
SHKBP1-201ENST00000291842 EIF4G2P78344 907 aaKnown RBP eCLIP25.78■■□□□ 1.72
SHKBP1-201ENST00000291842 WASHC2AQ641Q2 1341 aa25.77■■□□□ 1.72
SHKBP1-201ENST00000291842 RPRD2Q5VT52 1461 aaKnown RBP25.76■■□□□ 1.71
SHKBP1-201ENST00000291842 NBPF8Q3BBV2 869 aa25.76■■□□□ 1.71
SHKBP1-201ENST00000291842 PZPP20742 1482 aa25.74■■□□□ 1.71
SHKBP1-201ENST00000291842 ADGBQ8N7X0 1667 aa25.72■■□□□ 1.71
SHKBP1-201ENST00000291842 CDC42BPAQ5VT25 1732 aa25.71■■□□□ 1.71
SHKBP1-201ENST00000291842 PTPRGP23470 1445 aa25.71■■□□□ 1.71
SHKBP1-201ENST00000291842 ANKRD30AQ9BXX3 1397 aa25.71■■□□□ 1.71
SHKBP1-201ENST00000291842 ABCC10Q5T3U5 1492 aa25.7■■□□□ 1.7
SHKBP1-201ENST00000291842 TEX14Q8IWB6 1497 aa25.7■■□□□ 1.7
SHKBP1-201ENST00000291842 CROCC2H7BZ55 1655 aa25.7■■□□□ 1.7
SHKBP1-201ENST00000291842 ADGRL2O95490 1459 aa25.69■■□□□ 1.7
SHKBP1-201ENST00000291842 C11orf95C9JLR9 678 aaPredicted RBP25.68■■□□□ 1.7
SHKBP1-201ENST00000291842 PKD2Q13563 968 aa25.67■■□□□ 1.7
SHKBP1-201ENST00000291842 HNRNPMP52272 730 aaKnown RBP eCLIP25.66■■□□□ 1.7
SHKBP1-201ENST00000291842 ANKRD50Q9ULJ7 1429 aa25.65■■□□□ 1.7
SHKBP1-201ENST00000291842 C9orf84Q5VXU9 1444 aa25.63■■□□□ 1.69
SHKBP1-201ENST00000291842 TSPY4P0CV99 314 aa25.62■■□□□ 1.69
SHKBP1-201ENST00000291842 TSPY10P0CW01 314 aa25.62■■□□□ 1.69
SHKBP1-201ENST00000291842 CHD1O14646 1710 aa25.62■■□□□ 1.69
SHKBP1-201ENST00000291842 KIAA1107Q9UPP5 1409 aa25.61■■□□□ 1.69
SHKBP1-201ENST00000291842 ZNF326Q5BKZ1 582 aaKnown RBP25.6■■□□□ 1.69
SHKBP1-201ENST00000291842 NUP155O75694 1391 aa25.58■■□□□ 1.68
SHKBP1-201ENST00000291842 CCDC7Q96M83 1385 aa25.56■■□□□ 1.68
SHKBP1-201ENST00000291842 BCANQ96GW7 911 aa25.54■■□□□ 1.68
SHKBP1-201ENST00000291842 SHANK2Q9UPX8 1470 aa25.54■■□□□ 1.68
SHKBP1-201ENST00000291842 CNTLNQ9NXG0 1405 aa25.53■■□□□ 1.68
SHKBP1-201ENST00000291842 FKBP8Q14318 412 aa25.53■■□□□ 1.68
SHKBP1-201ENST00000291842 KIF15Q9NS87 1388 aa25.52■■□□□ 1.68
SHKBP1-201ENST00000291842 SPATA31E1Q6ZUB1 1445 aa25.51■■□□□ 1.67
SHKBP1-201ENST00000291842 MBD5Q9P267 1494 aa25.5■■□□□ 1.67
SHKBP1-201ENST00000291842 ERCC6L2Q5T890 1561 aa25.5■■□□□ 1.67
SHKBP1-201ENST00000291842 KIF7Q2M1P5 1343 aa25.49■■□□□ 1.67
SHKBP1-201ENST00000291842 CCDC184Q52MB2 194 aa25.48■■□□□ 1.67
SHKBP1-201ENST00000291842 HNRNPUQ00839 825 aaKnown RBP eCLIP25.48■■□□□ 1.67
SHKBP1-201ENST00000291842 CDC42BPBQ9Y5S2 1711 aa25.48■■□□□ 1.67
SHKBP1-201ENST00000291842 SAMD9LQ8IVG5 1584 aa25.48■■□□□ 1.67
SHKBP1-201ENST00000291842 ARHGEF5Q12774 1597 aa25.44■■□□□ 1.66
SHKBP1-201ENST00000291842 PREX2Q70Z35 1606 aa25.43■■□□□ 1.66
SHKBP1-201ENST00000291842 SHROOM2Q13796 1616 aa25.43■■□□□ 1.66
SHKBP1-201ENST00000291842 CCDC141Q6ZP82 1450 aa25.43■■□□□ 1.66
SHKBP1-201ENST00000291842 POLR3GLQ9BT43 218 aa25.42■■□□□ 1.66
SHKBP1-201ENST00000291842 PRKRIP1Q9H875 184 aaPredicted RBP25.42■■□□□ 1.66
SHKBP1-201ENST00000291842 KDM2AQ9Y2K7 1162 aa25.41■■□□□ 1.66
SHKBP1-201ENST00000291842 TTC37Q6PGP7 1564 aa25.41■■□□□ 1.66
SHKBP1-201ENST00000291842 USP47Q96K76 1375 aa25.4■■□□□ 1.66
SHKBP1-201ENST00000291842 ARHGAP5Q13017 1502 aa25.4■■□□□ 1.66
SHKBP1-201ENST00000291842 CNGB1Q14028 1251 aaPredicted RBP25.39■■□□□ 1.65
SHKBP1-201ENST00000291842 SYCP2Q9BX26 1530 aa25.39■■□□□ 1.65
SHKBP1-201ENST00000291842 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.38■■□□□ 1.65
SHKBP1-201ENST00000291842 NEFLP07196 543 aa25.38■■□□□ 1.65
SHKBP1-201ENST00000291842 KDM5DQ9BY66 1539 aa25.36■■□□□ 1.65
SHKBP1-201ENST00000291842 ABCC2Q92887 1545 aa25.35■■□□□ 1.65
SHKBP1-201ENST00000291842 RSPH4AQ5TD94 716 aa25.35■■□□□ 1.65
SHKBP1-201ENST00000291842 FAM9BQ8IZU0 186 aa25.35■■□□□ 1.65
SHKBP1-201ENST00000291842 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.34■■□□□ 1.65
SHKBP1-201ENST00000291842 DCAF11Q8TEB1 546 aa25.34■■□□□ 1.65
SHKBP1-201ENST00000291842 MRS2Q9HD23 443 aa25.33■■□□□ 1.65
SHKBP1-201ENST00000291842 POLR1AO95602 1720 aaPredicted RBP25.32■■□□□ 1.64
SHKBP1-201ENST00000291842 BCORL1Q5H9F3 1711 aa25.32■■□□□ 1.64
SHKBP1-201ENST00000291842 CARD11Q9BXL7 1154 aa25.31■■□□□ 1.64
SHKBP1-201ENST00000291842 FAM135AQ9P2D6 1515 aa25.31■■□□□ 1.64
SHKBP1-201ENST00000291842 UHRF1BP1Q6BDS2 1440 aa25.28■■□□□ 1.64
SHKBP1-201ENST00000291842 KDM5CP41229 1560 aa25.28■■□□□ 1.64
SHKBP1-201ENST00000291842 RALGAPBQ86X10 1494 aa25.25■■□□□ 1.63
SHKBP1-201ENST00000291842 MYO5CQ9NQX4 1742 aa25.25■■□□□ 1.63
SHKBP1-201ENST00000291842 RGL3Q3MIN7 710 aa25.25■■□□□ 1.63
SHKBP1-201ENST00000291842 TSHZ2Q9NRE2 1034 aa25.25■■□□□ 1.63
SHKBP1-201ENST00000291842 ARHGEF12Q9NZN5 1544 aa25.24■■□□□ 1.63
SHKBP1-201ENST00000291842 ST20-MTHFSA0A0A6YYL1 179 aa25.22■■□□□ 1.63
SHKBP1-201ENST00000291842 DHX29Q7Z478 1369 aaKnown RBP25.22■■□□□ 1.63
SHKBP1-201ENST00000291842 PLEKHH2Q8IVE3 1493 aa25.22■■□□□ 1.63
SHKBP1-201ENST00000291842 ZCCHC11Q5TAX3 1644 aaKnown RBP25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms