RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 KDM5BQ9UGL1 1544 aa28.63■■■□□ 2.17
VPS53-201ENST00000291074 ABCC5O15440 1437 aa28.62■■■□□ 2.17
VPS53-201ENST00000291074 TROQ12816 1431 aaPredicted RBP28.62■■■□□ 2.17
VPS53-201ENST00000291074 KCNH8Q96L42 1107 aa28.61■■■□□ 2.17
VPS53-201ENST00000291074 CARMIL2Q6F5E8 1435 aa28.61■■■□□ 2.17
VPS53-201ENST00000291074 KIF14Q15058 1648 aa28.6■■■□□ 2.17
VPS53-201ENST00000291074 MPHOSPH9Q99550 1183 aa28.56■■■□□ 2.16
VPS53-201ENST00000291074 ROCK1Q13464 1354 aa28.55■■■□□ 2.16
VPS53-201ENST00000291074 FOXD1Q16676 465 aa28.54■■■□□ 2.16
VPS53-201ENST00000291074 ITSN2Q9NZM3 1697 aa28.53■■■□□ 2.16
VPS53-201ENST00000291074 CAMSAP2Q08AD1 1489 aa28.53■■■□□ 2.16
VPS53-201ENST00000291074 ADCY10Q96PN6 1610 aa28.52■■■□□ 2.16
VPS53-201ENST00000291074 GPATCH8Q9UKJ3 1502 aaKnown RBP28.5■■■□□ 2.15
VPS53-201ENST00000291074 CFDP1Q9UEE9 299 aaPredicted RBP28.5■■■□□ 2.15
VPS53-201ENST00000291074 ABCA8O94911 1581 aa28.48■■■□□ 2.15
VPS53-201ENST00000291074 ZNF777Q9ULD5 760 aaPredicted RBP28.47■■■□□ 2.15
VPS53-201ENST00000291074 ADGBQ8N7X0 1667 aa28.41■■■□□ 2.14
VPS53-201ENST00000291074 ATP10BO94823 1461 aa28.4■■■□□ 2.14
VPS53-201ENST00000291074 CROCC2H7BZ55 1655 aa28.4■■■□□ 2.14
VPS53-201ENST00000291074 CDC42BPAQ5VT25 1732 aa28.4■■■□□ 2.14
VPS53-201ENST00000291074 L3MBTL2Q969R5 705 aa28.37■■■□□ 2.13
VPS53-201ENST00000291074 ANKRD30BQ9BXX2 1392 aa28.37■■■□□ 2.13
VPS53-201ENST00000291074 NCOA1Q15788 1441 aa28.36■■■□□ 2.13
VPS53-201ENST00000291074 PLEKHD1A6NEE1 506 aa28.36■■■□□ 2.13
VPS53-201ENST00000291074 CHD1O14646 1710 aa28.36■■■□□ 2.13
VPS53-201ENST00000291074 SLC4A1APQ9BWU0 796 aaKnown RBP28.36■■■□□ 2.13
VPS53-201ENST00000291074 ABCC10Q5T3U5 1492 aa28.33■■■□□ 2.13
VPS53-201ENST00000291074 PZPP20742 1482 aa28.31■■■□□ 2.12
VPS53-201ENST00000291074 RPRD2Q5VT52 1461 aaKnown RBP28.31■■■□□ 2.12
VPS53-201ENST00000291074 ANP32CO43423 234 aa28.31■■■□□ 2.12
VPS53-201ENST00000291074 HSPA5P11021 654 aaKnown RBP28.31■■■□□ 2.12
VPS53-201ENST00000291074 ADGRL2O95490 1459 aa28.3■■■□□ 2.12
VPS53-201ENST00000291074 PTPRGP23470 1445 aa28.28■■■□□ 2.12
VPS53-201ENST00000291074 TEX14Q8IWB6 1497 aa28.27■■■□□ 2.12
VPS53-201ENST00000291074 ANKRD30AQ9BXX3 1397 aa28.24■■■□□ 2.11
VPS53-201ENST00000291074 WASHC2AQ641Q2 1341 aa28.22■■■□□ 2.11
VPS53-201ENST00000291074 CCER2I3L3R5 266 aa28.22■■■□□ 2.11
VPS53-201ENST00000291074 NBPF8Q3BBV2 869 aa28.22■■■□□ 2.11
VPS53-201ENST00000291074 EIF4G2P78344 907 aaKnown RBP eCLIP28.21■■■□□ 2.112e-8■■■■■ 33.8
VPS53-201ENST00000291074 C9orf84Q5VXU9 1444 aa28.19■■■□□ 2.1
VPS53-201ENST00000291074 ANKRD50Q9ULJ7 1429 aa28.19■■■□□ 2.1
VPS53-201ENST00000291074 SUPT16HQ9Y5B9 1047 aaKnown RBP28.16■■■□□ 2.1
VPS53-201ENST00000291074 SHANK2Q9UPX8 1470 aa28.15■■■□□ 2.1
VPS53-201ENST00000291074 KIAA1107Q9UPP5 1409 aa28.14■■■□□ 2.09
VPS53-201ENST00000291074 SHROOM2Q13796 1616 aa28.14■■■□□ 2.09
VPS53-201ENST00000291074 HNRNPMP52272 730 aaKnown RBP eCLIP28.14■■■□□ 2.093e-6■■■□□ 17.4
VPS53-201ENST00000291074 ERCC6L2Q5T890 1561 aa28.13■■■□□ 2.09
VPS53-201ENST00000291074 CDC42BPBQ9Y5S2 1711 aa28.13■■■□□ 2.09
VPS53-201ENST00000291074 PKD2Q13563 968 aa28.13■■■□□ 2.09
VPS53-201ENST00000291074 C11orf95C9JLR9 678 aaPredicted RBP28.1■■■□□ 2.09
VPS53-201ENST00000291074 SAMD9LQ8IVG5 1584 aa28.1■■■□□ 2.09
VPS53-201ENST00000291074 PREX2Q70Z35 1606 aa28.09■■■□□ 2.09
VPS53-201ENST00000291074 TSPY4P0CV99 314 aa28.08■■■□□ 2.09
VPS53-201ENST00000291074 TSPY10P0CW01 314 aa28.08■■■□□ 2.09
VPS53-201ENST00000291074 MBD5Q9P267 1494 aa28.07■■■□□ 2.08
VPS53-201ENST00000291074 ARHGEF5Q12774 1597 aa28.07■■■□□ 2.08
VPS53-201ENST00000291074 NUP155O75694 1391 aa28.06■■■□□ 2.08
VPS53-201ENST00000291074 KIF15Q9NS87 1388 aa28.04■■■□□ 2.08
VPS53-201ENST00000291074 TTC37Q6PGP7 1564 aa28.04■■■□□ 2.08
VPS53-201ENST00000291074 CCDC7Q96M83 1385 aa28.03■■■□□ 2.08
VPS53-201ENST00000291074 CNTLNQ9NXG0 1405 aa28.02■■■□□ 2.08
VPS53-201ENST00000291074 CCDC141Q6ZP82 1450 aa28■■■□□ 2.07
VPS53-201ENST00000291074 SPATA31E1Q6ZUB1 1445 aa28■■■□□ 2.07
VPS53-201ENST00000291074 ZNF326Q5BKZ1 582 aaKnown RBP27.99■■■□□ 2.07
VPS53-201ENST00000291074 ABCC2Q92887 1545 aa27.98■■■□□ 2.07
VPS53-201ENST00000291074 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.97■■■□□ 2.07
VPS53-201ENST00000291074 SYCP2Q9BX26 1530 aa27.97■■■□□ 2.07
VPS53-201ENST00000291074 KDM5DQ9BY66 1539 aa27.97■■■□□ 2.07
VPS53-201ENST00000291074 ARHGAP5Q13017 1502 aa27.96■■■□□ 2.07
VPS53-201ENST00000291074 POLR1AO95602 1720 aaPredicted RBP27.95■■■□□ 2.07
VPS53-201ENST00000291074 MYT1Q01538 1121 aa27.93■■■□□ 2.06
VPS53-201ENST00000291074 KIF7Q2M1P5 1343 aa27.92■■■□□ 2.06
VPS53-201ENST00000291074 MYO5CQ9NQX4 1742 aa27.91■■■□□ 2.06
VPS53-201ENST00000291074 CLASP1Q7Z460 1538 aa27.87■■■□□ 2.05
VPS53-201ENST00000291074 CCDC184Q52MB2 194 aa27.86■■■□□ 2.05
VPS53-201ENST00000291074 USP47Q96K76 1375 aa27.86■■■□□ 2.05
VPS53-201ENST00000291074 BCORL1Q5H9F3 1711 aa27.86■■■□□ 2.05
VPS53-201ENST00000291074 FAM135AQ9P2D6 1515 aa27.85■■■□□ 2.05
VPS53-201ENST00000291074 ZCCHC11Q5TAX3 1644 aaKnown RBP27.85■■■□□ 2.05
VPS53-201ENST00000291074 RSPH4AQ5TD94 716 aa27.84■■■□□ 2.05
VPS53-201ENST00000291074 FKBP8Q14318 412 aa27.83■■■□□ 2.05
VPS53-201ENST00000291074 BCANQ96GW7 911 aa27.83■■■□□ 2.05
VPS53-201ENST00000291074 PRKRIP1Q9H875 184 aaPredicted RBP27.83■■■□□ 2.05
VPS53-201ENST00000291074 KDM5CP41229 1560 aa27.82■■■□□ 2.04
VPS53-201ENST00000291074 HNRNPUQ00839 825 aaKnown RBP eCLIP27.82■■■□□ 2.04
VPS53-201ENST00000291074 MAST1Q9Y2H9 1570 aa27.82■■■□□ 2.04
VPS53-201ENST00000291074 UHRF1BP1Q6BDS2 1440 aa27.8■■■□□ 2.04
VPS53-201ENST00000291074 ARHGEF12Q9NZN5 1544 aa27.8■■■□□ 2.04
VPS53-201ENST00000291074 KDM2AQ9Y2K7 1162 aa27.79■■■□□ 2.04
VPS53-201ENST00000291074 RALGAPBQ86X10 1494 aa27.78■■■□□ 2.04
VPS53-201ENST00000291074 POLR3GLQ9BT43 218 aa27.76■■■□□ 2.04
VPS53-201ENST00000291074 UNC13BO14795 1591 aa27.76■■■□□ 2.03
VPS53-201ENST00000291074 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.75■■■□□ 2.03
VPS53-201ENST00000291074 PLXNC1O60486 1568 aa27.74■■■□□ 2.03
VPS53-201ENST00000291074 DCAF11Q8TEB1 546 aa27.74■■■□□ 2.03
VPS53-201ENST00000291074 PLEKHH2Q8IVE3 1493 aa27.73■■■□□ 2.03
VPS53-201ENST00000291074 UHRF1BP1LA0JNW5 1464 aa27.71■■■□□ 2.03
VPS53-201ENST00000291074 CARD11Q9BXL7 1154 aa27.71■■■□□ 2.03
VPS53-201ENST00000291074 PLCH2O75038 1416 aa27.71■■■□□ 2.03
VPS53-201ENST00000291074 MRS2Q9HD23 443 aa27.7■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms