RNA–Protein interactions for RNA: ENST00000287766.8

SLC6A1-201, Transcript of solute carrier family 6 member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SLC6A1, Length 4,502 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1-201ENST00000287766 ST20-MTHFSA0A0A6YYL1 179 aa16.45■□□□□ 0.22
SLC6A1-201ENST00000287766 PPM1GO15355 546 aaPredicted RBP16.45■□□□□ 0.22
SLC6A1-201ENST00000287766 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.44■□□□□ 0.22
SLC6A1-201ENST00000287766 RGS3P49796 1198 aa16.44■□□□□ 0.22
SLC6A1-201ENST00000287766 SLC24A1O60721 1099 aa16.43■□□□□ 0.22
SLC6A1-201ENST00000287766 CCDC184Q52MB2 194 aa16.43■□□□□ 0.22
SLC6A1-201ENST00000287766 MYOM3Q5VTT5 1437 aa16.43■□□□□ 0.22
SLC6A1-201ENST00000287766 UACAQ9BZF9 1416 aa16.43■□□□□ 0.22
SLC6A1-201ENST00000287766 NPM1P06748 294 aaKnown RBP eCLIP16.43■□□□□ 0.22
SLC6A1-201ENST00000287766 DNAJC5BQ9UF47 199 aa16.43■□□□□ 0.22
SLC6A1-201ENST00000287766 UNC13AQ9UPW8 1703 aa16.43■□□□□ 0.22
SLC6A1-201ENST00000287766 JPH4Q96JJ6 628 aa16.42■□□□□ 0.22
SLC6A1-201ENST00000287766 STAG3Q9UJ98 1225 aa16.42■□□□□ 0.22
SLC6A1-201ENST00000287766 AQRO60306 1485 aaKnown RBP eCLIP16.42■□□□□ 0.22
SLC6A1-201ENST00000287766 NCOA2Q15596 1464 aa16.42■□□□□ 0.22
SLC6A1-201ENST00000287766 CASKIN1Q8WXD9 1431 aa16.42■□□□□ 0.22
SLC6A1-201ENST00000287766 DDRGK1Q96HY6 314 aa16.41■□□□□ 0.22
SLC6A1-201ENST00000287766 PLPPR3Q6T4P5 718 aa16.41■□□□□ 0.22
SLC6A1-201ENST00000287766 ROCK2O75116 1388 aaKnown RBP16.41■□□□□ 0.22
SLC6A1-201ENST00000287766 ANKRD30AQ9BXX3 1397 aa16.4■□□□□ 0.22
SLC6A1-201ENST00000287766 TIAM1Q13009 1591 aa16.4■□□□□ 0.22
SLC6A1-201ENST00000287766 ARID4BQ4LE39 1312 aaPredicted RBP16.4■□□□□ 0.22
SLC6A1-201ENST00000287766 TMF1P82094 1093 aa16.38■□□□□ 0.21
SLC6A1-201ENST00000287766 NUDCQ9Y266 331 aa16.38■□□□□ 0.21
SLC6A1-201ENST00000287766 KIF7Q2M1P5 1343 aa16.38■□□□□ 0.21
SLC6A1-201ENST00000287766 RCAN3Q9UKA8 241 aa16.37■□□□□ 0.21
SLC6A1-201ENST00000287766 NBPF8Q3BBV2 869 aa16.37■□□□□ 0.21
SLC6A1-201ENST00000287766 FRAT1Q92837 279 aaPredicted RBP16.36■□□□□ 0.21
SLC6A1-201ENST00000287766 POLA1P09884 1462 aaPredicted RBP16.35■□□□□ 0.21
SLC6A1-201ENST00000287766 USP47Q96K76 1375 aa16.34■□□□□ 0.21
SLC6A1-201ENST00000287766 CCDC7Q96M83 1385 aa16.34■□□□□ 0.21
SLC6A1-201ENST00000287766 CARMIL2Q6F5E8 1435 aa16.34■□□□□ 0.21
SLC6A1-201ENST00000287766 BECN1Q14457 450 aa16.33■□□□□ 0.2
SLC6A1-201ENST00000287766 KTN1Q86UP2 1357 aaKnown RBP16.33■□□□□ 0.2
SLC6A1-201ENST00000287766 PLIN1O60240 522 aa16.32■□□□□ 0.2
SLC6A1-201ENST00000287766 FYCO1Q9BQS8 1478 aa16.32■□□□□ 0.2
SLC6A1-201ENST00000287766 HMGXB3Q12766 1538 aa16.32■□□□□ 0.2
SLC6A1-201ENST00000287766 SAFB2Q14151 953 aaKnown RBP eCLIP16.31■□□□□ 0.2
SLC6A1-201ENST00000287766 ZBED9Q6R2W3 1325 aa16.31■□□□□ 0.2
SLC6A1-201ENST00000287766 TOPBP1Q92547 1522 aa16.3■□□□□ 0.2
SLC6A1-201ENST00000287766 CDCA8Q53HL2 280 aa16.3■□□□□ 0.2
SLC6A1-201ENST00000287766 PEG3Q9GZU2 1588 aa16.29■□□□□ 0.2
SLC6A1-201ENST00000287766 C11orf95C9JLR9 678 aaPredicted RBP16.29■□□□□ 0.2
SLC6A1-201ENST00000287766 RALBP1Q15311 655 aa16.29■□□□□ 0.2
SLC6A1-201ENST00000287766 NCLP19338 710 aaKnown RBP16.28■□□□□ 0.2
SLC6A1-201ENST00000287766 CCDC146Q8IYE0 955 aa16.27■□□□□ 0.2
SLC6A1-201ENST00000287766 AMER1Q5JTC6 1135 aaPredicted RBP16.27■□□□□ 0.2
SLC6A1-201ENST00000287766 DNTTIP2Q5QJE6 756 aaKnown RBP16.27■□□□□ 0.2
SLC6A1-201ENST00000287766 PCF11O94913 1555 aaKnown RBP16.27■□□□□ 0.2
SLC6A1-201ENST00000287766 EXOC6Q8TAG9 804 aa16.27■□□□□ 0.2
SLC6A1-201ENST00000287766 NLRP13Q86W25 1043 aa16.27■□□□□ 0.19
SLC6A1-201ENST00000287766 PANK3Q9H999 370 aa16.27■□□□□ 0.19
SLC6A1-201ENST00000287766 HFM1A2PYH4 1435 aa16.26■□□□□ 0.19
SLC6A1-201ENST00000287766 NAIPQ13075 1403 aa16.25■□□□□ 0.19
SLC6A1-201ENST00000287766 CNTLNQ9NXG0 1405 aa16.25■□□□□ 0.19
SLC6A1-201ENST00000287766 GGT6Q6P531 493 aa16.24■□□□□ 0.19
SLC6A1-201ENST00000287766 CC2D2AQ9P2K1 1620 aa16.24■□□□□ 0.19
SLC6A1-201ENST00000287766 PTMAP06454 111 aaKnown RBP16.22■□□□□ 0.19
SLC6A1-201ENST00000287766 ESF1Q9H501 851 aaKnown RBP16.22■□□□□ 0.19
SLC6A1-201ENST00000287766 MYBBP1AQ9BQG0 1328 aaKnown RBP16.21■□□□□ 0.19
SLC6A1-201ENST00000287766 U2SURPO15042 1029 aaKnown RBP16.21■□□□□ 0.19
SLC6A1-201ENST00000287766 NUTM2DQ5VT03 806 aaPredicted RBP16.21■□□□□ 0.19
SLC6A1-201ENST00000287766 KIF3BO15066 747 aa16.2■□□□□ 0.18
SLC6A1-201ENST00000287766 KIF15Q9NS87 1388 aa16.2■□□□□ 0.18
SLC6A1-201ENST00000287766 PRDM2Q13029 1718 aa16.2■□□□□ 0.18
SLC6A1-201ENST00000287766 EFCAB2Q5VUJ9 269 aa16.19■□□□□ 0.18
SLC6A1-201ENST00000287766 CFAP53Q96M91 514 aa16.19■□□□□ 0.18
SLC6A1-201ENST00000287766 GOLGA6L22H0YM25 854 aa16.19■□□□□ 0.18
SLC6A1-201ENST00000287766 MAPKBP1O60336 1514 aa16.18■□□□□ 0.18
SLC6A1-201ENST00000287766 BIVM-ERCC5R4GMW8 1640 aa16.18■□□□□ 0.18
SLC6A1-201ENST00000287766 CDK13Q14004 1512 aaKnown RBP16.18■□□□□ 0.18
SLC6A1-201ENST00000287766 TPRNQ4KMQ1 711 aa16.18■□□□□ 0.18
SLC6A1-201ENST00000287766 PLEKHG5O94827 1062 aa16.17■□□□□ 0.18
SLC6A1-201ENST00000287766 MORC1Q86VD1 984 aa16.17■□□□□ 0.18
SLC6A1-201ENST00000287766 STK26Q9P289 416 aa16.17■□□□□ 0.18
SLC6A1-201ENST00000287766 CCDC144AA2RUR9 1427 aa16.17■□□□□ 0.18
SLC6A1-201ENST00000287766 FTSJ3Q8IY81 847 aaKnown RBP16.17■□□□□ 0.18
SLC6A1-201ENST00000287766 IPO9Q96P70 1041 aaKnown RBP16.17■□□□□ 0.18
SLC6A1-201ENST00000287766 ARID3AQ99856 593 aa16.17■□□□□ 0.18
SLC6A1-201ENST00000287766 PRG4Q92954 1404 aaPredicted RBP16.17■□□□□ 0.18
SLC6A1-201ENST00000287766 CDK11BP21127 795 aaKnown RBP16.17■□□□□ 0.18
SLC6A1-201ENST00000287766 EFCAB5A4FU69 1503 aa16.16■□□□□ 0.18
SLC6A1-201ENST00000287766 NBPF1Q3BBV0 1214 aa16.16■□□□□ 0.18
SLC6A1-201ENST00000287766 RRP1P56182 461 aaKnown RBP16.16■□□□□ 0.18
SLC6A1-201ENST00000287766 PTPRKQ15262 1439 aa16.16■□□□□ 0.18
SLC6A1-201ENST00000287766 CDCA7LQ96GN5 454 aa16.15■□□□□ 0.18
SLC6A1-201ENST00000287766 ANKRD50Q9ULJ7 1429 aa16.15■□□□□ 0.18
SLC6A1-201ENST00000287766 AKNAQ7Z591 1439 aa16.15■□□□□ 0.18
SLC6A1-201ENST00000287766 SLC4A3P48751 1232 aa16.15■□□□□ 0.18
SLC6A1-201ENST00000287766 PTPRGP23470 1445 aa16.14■□□□□ 0.17
SLC6A1-201ENST00000287766 TCERG1O14776 1098 aaKnown RBP16.13■□□□□ 0.17
SLC6A1-201ENST00000287766 SPRYD3Q8NCJ5 442 aa16.13■□□□□ 0.17
SLC6A1-201ENST00000287766 CRBNQ96SW2 442 aa16.13■□□□□ 0.17
SLC6A1-201ENST00000287766 RRP7AQ9Y3A4 280 aaKnown RBP16.13■□□□□ 0.17
SLC6A1-201ENST00000287766 ABCA10Q8WWZ4 1543 aa16.13■□□□□ 0.17
SLC6A1-201ENST00000287766 CLUAP1Q96AJ1 413 aa16.13■□□□□ 0.17
SLC6A1-201ENST00000287766 PNNQ9H307 717 aaKnown RBP16.13■□□□□ 0.17
SLC6A1-201ENST00000287766 POGKQ9P215 609 aa16.13■□□□□ 0.17
SLC6A1-201ENST00000287766 SPAG9O60271 1321 aaKnown RBP16.12■□□□□ 0.17
SLC6A1-201ENST00000287766 DNMBPQ6XZF7 1577 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms