RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 PRKRIP1Q9H875 184 aaPredicted RBP15□□□□□ -0.01
VPS33A-201ENST00000267199 SPRYD3Q8NCJ5 442 aa14.99□□□□□ -0.01
VPS33A-201ENST00000267199 FRAT1Q92837 279 aaPredicted RBP14.99□□□□□ -0.01
VPS33A-201ENST00000267199 NCLP19338 710 aaKnown RBP14.99□□□□□ -0.01
VPS33A-201ENST00000267199 ANKRD30AQ9BXX3 1397 aa14.98□□□□□ -0.01
VPS33A-201ENST00000267199 ESF1Q9H501 851 aaKnown RBP14.98□□□□□ -0.01
VPS33A-201ENST00000267199 FGD6Q6ZV73 1430 aa14.98□□□□□ -0.01
VPS33A-201ENST00000267199 TNNT2P45379 298 aaPredicted RBP14.97□□□□□ -0.01
VPS33A-201ENST00000267199 RCAN3Q9UKA8 241 aa14.97□□□□□ -0.01
VPS33A-201ENST00000267199 NUDCQ9Y266 331 aa14.97□□□□□ -0.01
VPS33A-201ENST00000267199 TCERG1O14776 1098 aaKnown RBP14.95□□□□□ -0.02
VPS33A-201ENST00000267199 SLKQ9H2G2 1235 aaPredicted RBP14.95□□□□□ -0.02
VPS33A-201ENST00000267199 CARMIL2Q6F5E8 1435 aa14.95□□□□□ -0.02
VPS33A-201ENST00000267199 ROCK2O75116 1388 aaKnown RBP14.95□□□□□ -0.02
VPS33A-201ENST00000267199 KTN1Q86UP2 1357 aaKnown RBP14.95□□□□□ -0.02
VPS33A-201ENST00000267199 SLC4A3P48751 1232 aa14.94□□□□□ -0.02
VPS33A-201ENST00000267199 CFAP53Q96M91 514 aa14.94□□□□□ -0.02
VPS33A-201ENST00000267199 HNRNPMP52272 730 aaKnown RBP eCLIP14.93□□□□□ -0.02
VPS33A-201ENST00000267199 RALBP1Q15311 655 aa14.93□□□□□ -0.02
VPS33A-201ENST00000267199 TOP2BQ02880 1626 aa14.93□□□□□ -0.02
VPS33A-201ENST00000267199 GZF1Q9H116 711 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-201ENST00000267199 UACAQ9BZF9 1416 aa14.92□□□□□ -0.02
VPS33A-201ENST00000267199 CFTRP13569 1480 aa14.91□□□□□ -0.02
VPS33A-201ENST00000267199 ST20-MTHFSA0A0A6YYL1 179 aa14.91□□□□□ -0.02
VPS33A-201ENST00000267199 GOLGA6L22H0YM25 854 aa14.91□□□□□ -0.02
VPS33A-201ENST00000267199 TPRNQ4KMQ1 711 aa14.9□□□□□ -0.02
VPS33A-201ENST00000267199 MYOM3Q5VTT5 1437 aa14.9□□□□□ -0.02
VPS33A-201ENST00000267199 CUX1P39880 1505 aa14.89□□□□□ -0.03
VPS33A-201ENST00000267199 PLPPR3Q6T4P5 718 aa14.89□□□□□ -0.03
VPS33A-201ENST00000267199 FTSJ3Q8IY81 847 aaKnown RBP14.88□□□□□ -0.03
VPS33A-201ENST00000267199 JPH4Q96JJ6 628 aa14.88□□□□□ -0.03
VPS33A-201ENST00000267199 GAPVD1Q14C86 1478 aa14.88□□□□□ -0.03
VPS33A-201ENST00000267199 ZNF644Q9H582 1327 aaPredicted RBP14.88□□□□□ -0.03
VPS33A-201ENST00000267199 NLRP13Q86W25 1043 aa14.88□□□□□ -0.03
VPS33A-201ENST00000267199 CASKIN1Q8WXD9 1431 aa14.88□□□□□ -0.03
VPS33A-201ENST00000267199 ZBED9Q6R2W3 1325 aa14.88□□□□□ -0.03
VPS33A-201ENST00000267199 PDE4AP27815 886 aa14.86□□□□□ -0.03
VPS33A-201ENST00000267199 WASHC2AQ641Q2 1341 aa14.86□□□□□ -0.03
VPS33A-201ENST00000267199 PTMAP06454 111 aaKnown RBP14.86□□□□□ -0.03
VPS33A-201ENST00000267199 DNTTIP2Q5QJE6 756 aaKnown RBP14.85□□□□□ -0.03
VPS33A-201ENST00000267199 USP47Q96K76 1375 aa14.85□□□□□ -0.03
VPS33A-201ENST00000267199 MYH16Q9H6N6 1097 aa14.85□□□□□ -0.03
VPS33A-201ENST00000267199 L1TD1Q5T7N2 865 aaKnown RBP14.85□□□□□ -0.03
VPS33A-201ENST00000267199 EXOC6Q8TAG9 804 aa14.84□□□□□ -0.03
VPS33A-201ENST00000267199 NCOA2Q15596 1464 aa14.84□□□□□ -0.03
VPS33A-201ENST00000267199 ANO8Q9HCE9 1232 aaPredicted RBP14.84□□□□□ -0.03
VPS33A-201ENST00000267199 PNNQ9H307 717 aaKnown RBP14.83□□□□□ -0.03
VPS33A-201ENST00000267199 CCDC7Q96M83 1385 aa14.83□□□□□ -0.03
VPS33A-201ENST00000267199 PLIN1O60240 522 aa14.83□□□□□ -0.04
VPS33A-201ENST00000267199 KIF7Q2M1P5 1343 aa14.82□□□□□ -0.04
VPS33A-201ENST00000267199 U2SURPO15042 1029 aaKnown RBP14.82□□□□□ -0.04
VPS33A-201ENST00000267199 PAK3O75914 559 aaPredicted RBP14.82□□□□□ -0.04
VPS33A-201ENST00000267199 HSP90AB1P08238 724 aaKnown RBP14.82□□□□□ -0.04
VPS33A-201ENST00000267199 MAPK8IP3Q9UPT6 1336 aa14.81□□□□□ -0.04
VPS33A-201ENST00000267199 KIF15Q9NS87 1388 aa14.81□□□□□ -0.04
VPS33A-201ENST00000267199 EFCAB2Q5VUJ9 269 aa14.81□□□□□ -0.04
VPS33A-201ENST00000267199 TIAM1Q13009 1591 aa14.81□□□□□ -0.04
VPS33A-201ENST00000267199 FYCO1Q9BQS8 1478 aa14.8□□□□□ -0.04
VPS33A-201ENST00000267199 MYBBP1AQ9BQG0 1328 aaKnown RBP14.8□□□□□ -0.04
VPS33A-201ENST00000267199 GSE1Q14687 1217 aa14.8□□□□□ -0.04
VPS33A-201ENST00000267199 MORC1Q86VD1 984 aa14.8□□□□□ -0.04
VPS33A-201ENST00000267199 ARID3AQ99856 593 aa14.8□□□□□ -0.04
VPS33A-201ENST00000267199 KANK1Q14678 1352 aa14.8□□□□□ -0.04
VPS33A-201ENST00000267199 WDR97A6NE52 1622 aa14.79□□□□□ -0.04
VPS33A-201ENST00000267199 USP35Q9P2H5 1018 aa14.79□□□□□ -0.04
VPS33A-201ENST00000267199 PDE3BQ13370 1112 aa14.79□□□□□ -0.04
VPS33A-201ENST00000267199 IL27Q8NEV9 243 aa14.79□□□□□ -0.04
VPS33A-201ENST00000267199 MSH5O43196 834 aa14.78□□□□□ -0.04
VPS33A-201ENST00000267199 POGKQ9P215 609 aa14.78□□□□□ -0.04
VPS33A-201ENST00000267199 SAFB2Q14151 953 aaKnown RBP eCLIP14.78□□□□□ -0.04
VPS33A-201ENST00000267199 CNTLNQ9NXG0 1405 aa14.77□□□□□ -0.04
VPS33A-201ENST00000267199 HSCBQ8IWL3 235 aa14.77□□□□□ -0.04
VPS33A-201ENST00000267199 BICRAQ9NZM4 1560 aa14.77□□□□□ -0.04
VPS33A-201ENST00000267199 RSPH4AQ5TD94 716 aa14.77□□□□□ -0.04
VPS33A-201ENST00000267199 PANK3Q9H999 370 aa14.77□□□□□ -0.04
VPS33A-201ENST00000267199 ZBTB7CA1YPR0 619 aa14.77□□□□□ -0.05
VPS33A-201ENST00000267199 PLCB2Q00722 1185 aa14.76□□□□□ -0.05
VPS33A-201ENST00000267199 GGT6Q6P531 493 aa14.76□□□□□ -0.05
VPS33A-201ENST00000267199 CCDC144AA2RUR9 1427 aa14.75□□□□□ -0.05
VPS33A-201ENST00000267199 GOLGA2Q08379 1002 aa14.75□□□□□ -0.05
VPS33A-201ENST00000267199 AQRO60306 1485 aaKnown RBP eCLIP14.75□□□□□ -0.05
VPS33A-201ENST00000267199 CCDC146Q8IYE0 955 aa14.75□□□□□ -0.05
VPS33A-201ENST00000267199 HMGXB3Q12766 1538 aa14.74□□□□□ -0.05
VPS33A-201ENST00000267199 KIF3BO15066 747 aa14.74□□□□□ -0.05
VPS33A-201ENST00000267199 RRP1P56182 461 aaKnown RBP14.73□□□□□ -0.05
VPS33A-201ENST00000267199 HFM1A2PYH4 1435 aa14.73□□□□□ -0.05
VPS33A-201ENST00000267199 NESP48681 1621 aa14.73□□□□□ -0.05
VPS33A-201ENST00000267199 NBPF8Q3BBV2 869 aa14.72□□□□□ -0.05
VPS33A-201ENST00000267199 MSNP26038 577 aaKnown RBP14.72□□□□□ -0.05
VPS33A-201ENST00000267199 SRPK2P78362 688 aaKnown RBP14.72□□□□□ -0.05
VPS33A-201ENST00000267199 GOLGA6L3A6NEY3 463 aa14.72□□□□□ -0.05
VPS33A-201ENST00000267199 CCDC184Q52MB2 194 aa14.71□□□□□ -0.05
VPS33A-201ENST00000267199 CRBNQ96SW2 442 aa14.71□□□□□ -0.06
VPS33A-201ENST00000267199 POLA1P09884 1462 aaPredicted RBP14.7□□□□□ -0.06
VPS33A-201ENST00000267199 SPAG9O60271 1321 aaKnown RBP14.7□□□□□ -0.06
VPS33A-201ENST00000267199 EFCAB5A4FU69 1503 aa14.7□□□□□ -0.06
VPS33A-201ENST00000267199 U2AF1L5P0DN76 240 aaPredicted RBP14.7□□□□□ -0.06
VPS33A-201ENST00000267199 MS4A1P11836 297 aa14.7□□□□□ -0.06
VPS33A-201ENST00000267199 U2AF1Q01081 240 aaKnown RBP eCLIP14.7□□□□□ -0.06
VPS33A-201ENST00000267199 CLUAP1Q96AJ1 413 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms