RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 ARXQ96QS3 562 aa18.18■□□□□ 0.5
CDH3-201ENST00000264012 MORC1Q86VD1 984 aa18.18■□□□□ 0.5
CDH3-201ENST00000264012 RSPH4AQ5TD94 716 aa18.16■□□□□ 0.5
CDH3-201ENST00000264012 B4GALNT3Q6L9W6 998 aa18.16■□□□□ 0.5
CDH3-201ENST00000264012 KIF3BO15066 747 aa18.16■□□□□ 0.5
CDH3-201ENST00000264012 KTN1Q86UP2 1357 aaKnown RBP18.16■□□□□ 0.5
CDH3-201ENST00000264012 STK26Q9P289 416 aa18.15■□□□□ 0.5
CDH3-201ENST00000264012 TRHP20396 242 aaPredicted RBP18.14■□□□□ 0.49
CDH3-201ENST00000264012 RGS3P49796 1198 aa18.14■□□□□ 0.49
CDH3-201ENST00000264012 PNNQ9H307 717 aaKnown RBP18.14■□□□□ 0.49
CDH3-201ENST00000264012 IGF1RP08069 1367 aa18.13■□□□□ 0.49
CDH3-201ENST00000264012 SPAG9O60271 1321 aaKnown RBP18.12■□□□□ 0.49
CDH3-201ENST00000264012 DHX57Q6P158 1386 aaKnown RBP18.11■□□□□ 0.49
CDH3-201ENST00000264012 FGD5Q6ZNL6 1462 aa18.11■□□□□ 0.49
CDH3-201ENST00000264012 MS4A1P11836 297 aa18.1■□□□□ 0.49
CDH3-201ENST00000264012 RALBP1Q15311 655 aa18.09■□□□□ 0.49
CDH3-201ENST00000264012 SOX12O15370 315 aa18.08■□□□□ 0.49
CDH3-201ENST00000264012 CHMP4BQ9H444 224 aaKnown RBP18.07■□□□□ 0.48
CDH3-201ENST00000264012 EIF5BO60841 1220 aaKnown RBP18.07■□□□□ 0.48
CDH3-201ENST00000264012 NCAPD3P42695 1498 aa18.06■□□□□ 0.48
CDH3-201ENST00000264012 HDGFL2Q7Z4V5 671 aaPredicted RBP18.05■□□□□ 0.48
CDH3-201ENST00000264012 CASC1Q6TDU7 716 aa18.05■□□□□ 0.48
CDH3-201ENST00000264012 GAPVD1Q14C86 1478 aa18.05■□□□□ 0.48
CDH3-201ENST00000264012 RAD54L2Q9Y4B4 1467 aa18.04■□□□□ 0.48
CDH3-201ENST00000264012 PTPRGP23470 1445 aa18.04■□□□□ 0.48
CDH3-201ENST00000264012 EIF3AQ14152 1382 aaKnown RBP18.01■□□□□ 0.47
CDH3-201ENST00000264012 GOLGA6L22H0YM25 854 aa18.01■□□□□ 0.47
CDH3-201ENST00000264012 WASHC2CQ9Y4E1 1318 aa18.01■□□□□ 0.47
CDH3-201ENST00000264012 U2AF1L5P0DN76 240 aaPredicted RBP18■□□□□ 0.47
CDH3-201ENST00000264012 U2AF1Q01081 240 aaKnown RBP eCLIP18■□□□□ 0.47
CDH3-201ENST00000264012 GLIPR1L2Q4G1C9 344 aa17.98■□□□□ 0.47
CDH3-201ENST00000264012 NCLP19338 710 aaKnown RBP17.98■□□□□ 0.47
CDH3-201ENST00000264012 RCAN3Q9UKA8 241 aa17.97■□□□□ 0.47
CDH3-201ENST00000264012 CCDC144AA2RUR9 1427 aa17.95■□□□□ 0.46
CDH3-201ENST00000264012 NLRP13Q86W25 1043 aa17.95■□□□□ 0.46
CDH3-201ENST00000264012 ST20-MTHFSA0A0A6YYL1 179 aa17.95■□□□□ 0.46
CDH3-201ENST00000264012 NUTM2DQ5VT03 806 aaPredicted RBP17.95■□□□□ 0.46
CDH3-201ENST00000264012 ERICH6BQ5W0A0 696 aa17.94■□□□□ 0.46
CDH3-201ENST00000264012 OS9Q13438 667 aaPredicted RBP17.93■□□□□ 0.46
CDH3-201ENST00000264012 NOP58Q9Y2X3 529 aaKnown RBP17.93■□□□□ 0.46
CDH3-201ENST00000264012 RTF1Q92541 710 aaKnown RBP17.92■□□□□ 0.46
CDH3-201ENST00000264012 KIF21BO75037 1637 aa17.91■□□□□ 0.46
CDH3-201ENST00000264012 TERF2IPQ9NYB0 399 aa17.91■□□□□ 0.46
CDH3-201ENST00000264012 FGD6Q6ZV73 1430 aa17.89■□□□□ 0.45
CDH3-201ENST00000264012 IPO8O15397 1037 aaKnown RBP17.89■□□□□ 0.45
CDH3-201ENST00000264012 AQRO60306 1485 aaKnown RBP eCLIP17.89■□□□□ 0.45
CDH3-201ENST00000264012 TRAK1Q9UPV9 953 aa17.89■□□□□ 0.45
CDH3-201ENST00000264012 PAK3O75914 559 aaPredicted RBP17.88■□□□□ 0.45
CDH3-201ENST00000264012 MYOM3Q5VTT5 1437 aa17.88■□□□□ 0.45
CDH3-201ENST00000264012 PHLDB1Q86UU1 1377 aa17.87■□□□□ 0.45
CDH3-201ENST00000264012 CALD1Q05682 793 aaKnown RBP17.87■□□□□ 0.45
CDH3-201ENST00000264012 ZNF644Q9H582 1327 aaPredicted RBP17.86■□□□□ 0.45
CDH3-201ENST00000264012 KIF15Q9NS87 1388 aa17.86■□□□□ 0.45
CDH3-201ENST00000264012 GOLGA2Q08379 1002 aa17.85■□□□□ 0.45
CDH3-201ENST00000264012 TRIM44Q96DX7 344 aaPredicted RBP17.85■□□□□ 0.45
CDH3-201ENST00000264012 CFTRP13569 1480 aa17.85■□□□□ 0.45
CDH3-201ENST00000264012 RBM19Q9Y4C8 960 aaKnown RBP17.84■□□□□ 0.45
CDH3-201ENST00000264012 HSP90AB1P08238 724 aaKnown RBP17.84■□□□□ 0.45
CDH3-201ENST00000264012 PANK3Q9H999 370 aa17.84■□□□□ 0.45
CDH3-201ENST00000264012 LRRC9Q6ZRR7 1453 aa17.84■□□□□ 0.45
CDH3-201ENST00000264012 CCDC146Q8IYE0 955 aa17.83■□□□□ 0.45
CDH3-201ENST00000264012 USP47Q96K76 1375 aa17.83■□□□□ 0.45
CDH3-201ENST00000264012 PRKRIP1Q9H875 184 aaPredicted RBP17.83■□□□□ 0.44
CDH3-201ENST00000264012 EID1Q9Y6B2 187 aa17.83■□□□□ 0.44
CDH3-201ENST00000264012 PDE3BQ13370 1112 aa17.82■□□□□ 0.44
CDH3-201ENST00000264012 MYBBP1AQ9BQG0 1328 aaKnown RBP17.82■□□□□ 0.44
CDH3-201ENST00000264012 OSCARQ8IYS5 282 aa17.82■□□□□ 0.44
CDH3-201ENST00000264012 UACAQ9BZF9 1416 aa17.81■□□□□ 0.44
CDH3-201ENST00000264012 KCNJ4P48050 445 aa17.81■□□□□ 0.44
CDH3-201ENST00000264012 SYNJ1O43426 1573 aa17.81■□□□□ 0.44
CDH3-201ENST00000264012 CASKIN1Q8WXD9 1431 aa17.8■□□□□ 0.44
CDH3-201ENST00000264012 TPRNQ4KMQ1 711 aa17.8■□□□□ 0.44
CDH3-201ENST00000264012 CYB5RLQ6IPT4 315 aa17.8■□□□□ 0.44
CDH3-201ENST00000264012 ITPRIPQ8IWB1 547 aa17.8■□□□□ 0.44
CDH3-201ENST00000264012 CUX1P39880 1505 aa17.8■□□□□ 0.44
CDH3-201ENST00000264012 RWDD1Q9H446 243 aaPredicted RBP17.79■□□□□ 0.44
CDH3-201ENST00000264012 VGFO15240 615 aaPredicted RBP17.79■□□□□ 0.44
CDH3-201ENST00000264012 ARAP1Q96P48 1450 aa17.78■□□□□ 0.44
CDH3-201ENST00000264012 ERICH3Q5RHP9 1530 aa17.78■□□□□ 0.44
CDH3-201ENST00000264012 HSCBQ8IWL3 235 aa17.78■□□□□ 0.44
CDH3-201ENST00000264012 FGD1P98174 961 aa17.77■□□□□ 0.44
CDH3-201ENST00000264012 APBB1O00213 710 aa17.77■□□□□ 0.44
CDH3-201ENST00000264012 NPHP1O15259 732 aa17.77■□□□□ 0.43
CDH3-201ENST00000264012 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.77■□□□□ 0.43
CDH3-201ENST00000264012 NGDNQ8NEJ9 315 aaKnown RBP17.77■□□□□ 0.43
CDH3-201ENST00000264012 SMC4Q9NTJ3 1288 aa17.77■□□□□ 0.43
CDH3-201ENST00000264012 ZRSR1Q15695 479 aaKnown RBP17.76■□□□□ 0.43
CDH3-201ENST00000264012 TCERG1O14776 1098 aaKnown RBP17.76■□□□□ 0.43
CDH3-201ENST00000264012 GRIN2BQ13224 1484 aa17.76■□□□□ 0.43
CDH3-201ENST00000264012 NCOA2Q15596 1464 aa17.76■□□□□ 0.43
CDH3-201ENST00000264012 TSHZ2Q9NRE2 1034 aa17.76■□□□□ 0.43
CDH3-201ENST00000264012 NUTM2FA1L443 756 aa17.75■□□□□ 0.43
CDH3-201ENST00000264012 CSB-PGBD3P0DP91 1061 aa17.74■□□□□ 0.43
CDH3-201ENST00000264012 CENPJQ9HC77 1338 aaPredicted RBP17.74■□□□□ 0.43
CDH3-201ENST00000264012 CLUAP1Q96AJ1 413 aa17.74■□□□□ 0.43
CDH3-201ENST00000264012 FYCO1Q9BQS8 1478 aa17.73■□□□□ 0.43
CDH3-201ENST00000264012 PTMAP06454 111 aaKnown RBP17.73■□□□□ 0.43
CDH3-201ENST00000264012 NESP48681 1621 aa17.73■□□□□ 0.43
CDH3-201ENST00000264012 CFAP44Q96MT7 982 aa17.73■□□□□ 0.43
CDH3-201ENST00000264012 ANKRD50Q9ULJ7 1429 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms