RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 DAPK1P53355 1430 aa18.69■□□□□ 0.58
SPTLC1-201ENST00000262554 KIF14Q15058 1648 aa18.68■□□□□ 0.58
SPTLC1-201ENST00000262554 ROCK1Q13464 1354 aa18.66■□□□□ 0.58
SPTLC1-201ENST00000262554 SHROOM2Q13796 1616 aa18.66■□□□□ 0.58
SPTLC1-201ENST00000262554 ATP10BO94823 1461 aa18.65■□□□□ 0.58
SPTLC1-201ENST00000262554 PTPRGP23470 1445 aa18.65■□□□□ 0.58
SPTLC1-201ENST00000262554 ACIN1Q9UKV3 1341 aaKnown RBP18.64■□□□□ 0.57
SPTLC1-201ENST00000262554 ABCC5O15440 1437 aa18.64■□□□□ 0.57
SPTLC1-201ENST00000262554 GPATCH8Q9UKJ3 1502 aaKnown RBP18.64■□□□□ 0.57
SPTLC1-201ENST00000262554 PLEKHD1A6NEE1 506 aa18.64■□□□□ 0.57
SPTLC1-201ENST00000262554 CAMSAP2Q08AD1 1489 aa18.63■□□□□ 0.57
SPTLC1-201ENST00000262554 MIER1Q8N108 512 aa18.63■□□□□ 0.57
SPTLC1-201ENST00000262554 CFDP1Q9UEE9 299 aaPredicted RBP18.63■□□□□ 0.57
SPTLC1-201ENST00000262554 KDM6BO15054 1643 aa18.63■□□□□ 0.57
SPTLC1-201ENST00000262554 ZNF644Q9H582 1327 aaPredicted RBP18.62■□□□□ 0.57
SPTLC1-201ENST00000262554 TONSLQ96HA7 1378 aa18.61■□□□□ 0.57
SPTLC1-201ENST00000262554 TRIM52Q96A61 297 aa18.6■□□□□ 0.57
SPTLC1-201ENST00000262554 ADGBQ8N7X0 1667 aa18.6■□□□□ 0.57
SPTLC1-201ENST00000262554 CDC42BPAQ5VT25 1732 aa18.6■□□□□ 0.57
SPTLC1-201ENST00000262554 CENPBP07199 599 aaPredicted RBP18.59■□□□□ 0.57
SPTLC1-201ENST00000262554 PPP1R15AO75807 674 aaPredicted RBP18.58■□□□□ 0.57
SPTLC1-201ENST00000262554 CROCC2H7BZ55 1655 aa18.58■□□□□ 0.57
SPTLC1-201ENST00000262554 ABCC10Q5T3U5 1492 aa18.57■□□□□ 0.56
SPTLC1-201ENST00000262554 MSH5O43196 834 aa18.55■□□□□ 0.56
SPTLC1-201ENST00000262554 ZNF777Q9ULD5 760 aaPredicted RBP18.54■□□□□ 0.56
SPTLC1-201ENST00000262554 DENND4BO75064 1496 aaPredicted RBP18.53■□□□□ 0.56
SPTLC1-201ENST00000262554 MPHOSPH9Q99550 1183 aa18.52■□□□□ 0.56
SPTLC1-201ENST00000262554 ADGRL2O95490 1459 aa18.52■□□□□ 0.55
SPTLC1-201ENST00000262554 CLASP1Q7Z460 1538 aa18.5■□□□□ 0.55
SPTLC1-201ENST00000262554 NCOA1Q15788 1441 aa18.5■□□□□ 0.55
SPTLC1-201ENST00000262554 ERCC6L2Q5T890 1561 aa18.49■□□□□ 0.55
SPTLC1-201ENST00000262554 ABCC2Q92887 1545 aa18.48■□□□□ 0.55
SPTLC1-201ENST00000262554 ANKRD30AQ9BXX3 1397 aa18.48■□□□□ 0.55
SPTLC1-201ENST00000262554 SHANK2Q9UPX8 1470 aa18.47■□□□□ 0.55
SPTLC1-201ENST00000262554 PREX2Q70Z35 1606 aa18.46■□□□□ 0.54
SPTLC1-201ENST00000262554 KDM5BQ9UGL1 1544 aa18.44■□□□□ 0.54
SPTLC1-201ENST00000262554 CDC42BPBQ9Y5S2 1711 aa18.44■□□□□ 0.54
SPTLC1-201ENST00000262554 ARHGEF5Q12774 1597 aa18.44■□□□□ 0.54
SPTLC1-201ENST00000262554 SCAF1Q9H7N4 1312 aaKnown RBP18.43■□□□□ 0.54
SPTLC1-201ENST00000262554 YTHDC1Q96MU7 727 aaKnown RBP18.43■□□□□ 0.54
SPTLC1-201ENST00000262554 C9orf84Q5VXU9 1444 aa18.42■□□□□ 0.54
SPTLC1-201ENST00000262554 SLC4A1APQ9BWU0 796 aaKnown RBP18.41■□□□□ 0.54
SPTLC1-201ENST00000262554 NCBP3Q53F19 620 aaKnown RBP18.41■□□□□ 0.54
SPTLC1-201ENST00000262554 ANKRD30BQ9BXX2 1392 aa18.4■□□□□ 0.54
SPTLC1-201ENST00000262554 SAMD9LQ8IVG5 1584 aa18.4■□□□□ 0.54
SPTLC1-201ENST00000262554 TSPY4P0CV99 314 aa18.39■□□□□ 0.54
SPTLC1-201ENST00000262554 TSPY10P0CW01 314 aa18.39■□□□□ 0.54
SPTLC1-201ENST00000262554 ANKRD50Q9ULJ7 1429 aa18.39■□□□□ 0.53
SPTLC1-201ENST00000262554 PZPP20742 1482 aa18.39■□□□□ 0.53
SPTLC1-201ENST00000262554 UHRF1BP1LA0JNW5 1464 aa18.38■□□□□ 0.53
SPTLC1-201ENST00000262554 TTC37Q6PGP7 1564 aa18.38■□□□□ 0.53
SPTLC1-201ENST00000262554 MYO5CQ9NQX4 1742 aa18.38■□□□□ 0.53
SPTLC1-201ENST00000262554 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.37■□□□□ 0.535e-6■■■■□ 19.7
SPTLC1-201ENST00000262554 RPRD2Q5VT52 1461 aaKnown RBP18.37■□□□□ 0.53
SPTLC1-201ENST00000262554 ZCCHC11Q5TAX3 1644 aaKnown RBP18.37■□□□□ 0.53
SPTLC1-201ENST00000262554 MBD5Q9P267 1494 aa18.36■□□□□ 0.53
SPTLC1-201ENST00000262554 RSPH4AQ5TD94 716 aa18.36■□□□□ 0.53
SPTLC1-201ENST00000262554 CCDC141Q6ZP82 1450 aa18.36■□□□□ 0.53
SPTLC1-201ENST00000262554 HNRNPMP52272 730 aaKnown RBP eCLIP18.35■□□□□ 0.532e-6■■■■□ 22.2
SPTLC1-201ENST00000262554 ARHGAP5Q13017 1502 aa18.35■□□□□ 0.53
SPTLC1-201ENST00000262554 DDX10Q13206 875 aaKnown RBP18.33■□□□□ 0.53
SPTLC1-201ENST00000262554 HIRIP3Q9BW71 556 aaPredicted RBP18.33■□□□□ 0.52
SPTLC1-201ENST00000262554 KIAA1107Q9UPP5 1409 aa18.32■□□□□ 0.52
SPTLC1-201ENST00000262554 L3MBTL2Q969R5 705 aa18.31■□□□□ 0.52
SPTLC1-201ENST00000262554 KIF15Q9NS87 1388 aa18.31■□□□□ 0.52
SPTLC1-201ENST00000262554 SYCP2Q9BX26 1530 aa18.31■□□□□ 0.52
SPTLC1-201ENST00000262554 PLEKHH2Q8IVE3 1493 aa18.3■□□□□ 0.52
SPTLC1-201ENST00000262554 KDM5DQ9BY66 1539 aa18.3■□□□□ 0.52
SPTLC1-201ENST00000262554 MAST1Q9Y2H9 1570 aa18.29■□□□□ 0.52
SPTLC1-201ENST00000262554 TEX14Q8IWB6 1497 aa18.29■□□□□ 0.52
SPTLC1-201ENST00000262554 KCNH8Q96L42 1107 aa18.28■□□□□ 0.52
SPTLC1-201ENST00000262554 NUP155O75694 1391 aa18.27■□□□□ 0.51
SPTLC1-201ENST00000262554 PKD2Q13563 968 aa18.26■□□□□ 0.51
SPTLC1-201ENST00000262554 GTF3C3Q9Y5Q9 886 aa18.24■□□□□ 0.51
SPTLC1-201ENST00000262554 PLCH2O75038 1416 aa18.24■□□□□ 0.51
SPTLC1-201ENST00000262554 EIF4G2P78344 907 aaKnown RBP eCLIP18.23■□□□□ 0.51
SPTLC1-201ENST00000262554 PLXNC1O60486 1568 aa18.23■□□□□ 0.51
SPTLC1-201ENST00000262554 HSPA5P11021 654 aaKnown RBP18.22■□□□□ 0.51
SPTLC1-201ENST00000262554 EFCAB2Q5VUJ9 269 aa18.2■□□□□ 0.5
SPTLC1-201ENST00000262554 ANP32CO43423 234 aa18.18■□□□□ 0.5
SPTLC1-201ENST00000262554 NPM3O75607 178 aaKnown RBP18.18■□□□□ 0.5
SPTLC1-201ENST00000262554 ARAP3Q8WWN8 1544 aa18.18■□□□□ 0.5
SPTLC1-201ENST00000262554 UNC13BO14795 1591 aa18.18■□□□□ 0.5
SPTLC1-201ENST00000262554 NBPF8Q3BBV2 869 aa18.18■□□□□ 0.5
SPTLC1-201ENST00000262554 ABCC1P33527 1531 aa18.18■□□□□ 0.5
SPTLC1-201ENST00000262554 ARHGEF12Q9NZN5 1544 aa18.17■□□□□ 0.5
SPTLC1-201ENST00000262554 FAM135AQ9P2D6 1515 aa18.17■□□□□ 0.5
SPTLC1-201ENST00000262554 WDR7Q9Y4E6 1490 aa18.16■□□□□ 0.5
SPTLC1-201ENST00000262554 DUOX2Q9NRD8 1548 aa18.15■□□□□ 0.5
SPTLC1-201ENST00000262554 CNKSR2Q8WXI2 1034 aa18.14■□□□□ 0.49
SPTLC1-201ENST00000262554 CCER2I3L3R5 266 aa18.13■□□□□ 0.49
SPTLC1-201ENST00000262554 WASHC2AQ641Q2 1341 aa18.12■□□□□ 0.49
SPTLC1-201ENST00000262554 OSCARQ8IYS5 282 aa18.12■□□□□ 0.49
SPTLC1-201ENST00000262554 ERBINQ96RT1 1412 aa18.11■□□□□ 0.49
SPTLC1-201ENST00000262554 POLR1AO95602 1720 aaPredicted RBP18.11■□□□□ 0.49
SPTLC1-201ENST00000262554 IQGAP3Q86VI3 1631 aa18.11■□□□□ 0.49
SPTLC1-201ENST00000262554 ABCA9Q8IUA7 1624 aa18.1■□□□□ 0.49
SPTLC1-201ENST00000262554 SPATA31E1Q6ZUB1 1445 aa18.09■□□□□ 0.49
SPTLC1-201ENST00000262554 UHRF1BP1Q6BDS2 1440 aa18.08■□□□□ 0.49
SPTLC1-201ENST00000262554 TRAPPC8Q9Y2L5 1435 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms