RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 NEFLP07196 543 aa21.29■■□□□ 1
DDX56-201ENST00000258772 FOXD1Q16676 465 aa21.28■■□□□ 1
DDX56-201ENST00000258772 DNMT1P26358 1616 aaKnown RBP21.28■■□□□ 1
DDX56-201ENST00000258772 ABCC5O15440 1437 aa21.28■■□□□ 1
DDX56-201ENST00000258772 RAPGEF6Q8TEU7 1601 aa21.26■□□□□ 0.99
DDX56-201ENST00000258772 ANKRD30BQ9BXX2 1392 aa21.26■□□□□ 0.99
DDX56-201ENST00000258772 CDK11AQ9UQ88 783 aaPredicted RBP21.26■□□□□ 0.99
DDX56-201ENST00000258772 ZNF644Q9H582 1327 aaPredicted RBP21.25■□□□□ 0.99
DDX56-201ENST00000258772 GRIN2AQ12879 1464 aa21.24■□□□□ 0.99
DDX56-201ENST00000258772 RPRD2Q5VT52 1461 aaKnown RBP21.22■□□□□ 0.99
DDX56-201ENST00000258772 EIF4G3O43432 1585 aaKnown RBP21.19■□□□□ 0.98
DDX56-201ENST00000258772 CNTLNQ9NXG0 1405 aa21.18■□□□□ 0.98
DDX56-201ENST00000258772 HNRNPUQ00839 825 aaKnown RBP eCLIP21.18■□□□□ 0.98
DDX56-201ENST00000258772 SLC4A1APQ9BWU0 796 aaKnown RBP21.18■□□□□ 0.98
DDX56-201ENST00000258772 C11orf95C9JLR9 678 aaPredicted RBP21.17■□□□□ 0.98
DDX56-201ENST00000258772 NBPF8Q3BBV2 869 aa21.17■□□□□ 0.98
DDX56-201ENST00000258772 NCOA1Q15788 1441 aa21.17■□□□□ 0.98
DDX56-201ENST00000258772 TEX14Q8IWB6 1497 aa21.17■□□□□ 0.98
DDX56-201ENST00000258772 TROQ12816 1431 aaPredicted RBP21.16■□□□□ 0.98
DDX56-201ENST00000258772 PRG4Q92954 1404 aaPredicted RBP21.16■□□□□ 0.98
DDX56-201ENST00000258772 CCDC7Q96M83 1385 aa21.15■□□□□ 0.98
DDX56-201ENST00000258772 CFDP1Q9UEE9 299 aaPredicted RBP21.13■□□□□ 0.97
DDX56-201ENST00000258772 CAMSAP2Q08AD1 1489 aa21.12■□□□□ 0.97
DDX56-201ENST00000258772 MAGI1Q96QZ7 1491 aaPredicted RBP21.12■□□□□ 0.97
DDX56-201ENST00000258772 ITSN2Q9NZM3 1697 aa21.11■□□□□ 0.97
DDX56-201ENST00000258772 CHMP7Q8WUX9 453 aaPredicted RBP21.11■□□□□ 0.97
DDX56-201ENST00000258772 GPATCH8Q9UKJ3 1502 aaKnown RBP21.1■□□□□ 0.97
DDX56-201ENST00000258772 PLB1Q6P1J6 1458 aa21.1■□□□□ 0.97
DDX56-201ENST00000258772 PZPP20742 1482 aa21.1■□□□□ 0.97
DDX56-201ENST00000258772 SPATA31E1Q6ZUB1 1445 aa21.1■□□□□ 0.97
DDX56-201ENST00000258772 PRKRIP1Q9H875 184 aaPredicted RBP21.1■□□□□ 0.97
DDX56-201ENST00000258772 CEP170Q5SW79 1584 aa21.1■□□□□ 0.97
DDX56-201ENST00000258772 ADGBQ8N7X0 1667 aa21.08■□□□□ 0.97
DDX56-201ENST00000258772 CCDC184Q52MB2 194 aa21.08■□□□□ 0.97
DDX56-201ENST00000258772 SYNJ2O15056 1496 aa21.08■□□□□ 0.96
DDX56-201ENST00000258772 ADCY10Q96PN6 1610 aa21.07■□□□□ 0.96
DDX56-201ENST00000258772 KIF14Q15058 1648 aa21.06■□□□□ 0.96
DDX56-201ENST00000258772 POLR1AO95602 1720 aaPredicted RBP21.06■□□□□ 0.96
DDX56-201ENST00000258772 ADGRL2O95490 1459 aa21.05■□□□□ 0.96
DDX56-201ENST00000258772 ZNF777Q9ULD5 760 aaPredicted RBP21.05■□□□□ 0.96
DDX56-201ENST00000258772 KIF7Q2M1P5 1343 aa21.04■□□□□ 0.96
DDX56-201ENST00000258772 CARMIL2Q6F5E8 1435 aa21.04■□□□□ 0.96
DDX56-201ENST00000258772 JPH4Q96JJ6 628 aa21.03■□□□□ 0.96
DDX56-201ENST00000258772 ERCC6Q03468 1493 aa21.03■□□□□ 0.96
DDX56-201ENST00000258772 CROCC2H7BZ55 1655 aa21.03■□□□□ 0.96
DDX56-201ENST00000258772 FBLN2P98095 1184 aa21.02■□□□□ 0.96
DDX56-201ENST00000258772 KIAA1107Q9UPP5 1409 aa21.02■□□□□ 0.95
DDX56-201ENST00000258772 ANKRD30AQ9BXX3 1397 aa21■□□□□ 0.95
DDX56-201ENST00000258772 NUP160Q12769 1436 aa21■□□□□ 0.95
DDX56-201ENST00000258772 MRS2Q9HD23 443 aa20.99■□□□□ 0.95
DDX56-201ENST00000258772 RBM19Q9Y4C8 960 aaKnown RBP20.99■□□□□ 0.95
DDX56-201ENST00000258772 MBD5Q9P267 1494 aa20.99■□□□□ 0.95
DDX56-201ENST00000258772 PKD2Q13563 968 aa20.98■□□□□ 0.95
DDX56-201ENST00000258772 FAM9BQ8IZU0 186 aa20.98■□□□□ 0.95
DDX56-201ENST00000258772 PLEKHD1A6NEE1 506 aa20.96■□□□□ 0.95
DDX56-201ENST00000258772 ANKRD50Q9ULJ7 1429 aa20.96■□□□□ 0.95
DDX56-201ENST00000258772 CDC42BPAQ5VT25 1732 aa20.95■□□□□ 0.94
DDX56-201ENST00000258772 IRX6P78412 446 aaPredicted RBP20.94■□□□□ 0.94
DDX56-201ENST00000258772 ABCA8O94911 1581 aa20.93■□□□□ 0.94
DDX56-201ENST00000258772 ERICH6BQ5W0A0 696 aa20.93■□□□□ 0.94
DDX56-201ENST00000258772 ANP32EQ9BTT0 268 aa20.93■□□□□ 0.94
DDX56-201ENST00000258772 ZBED9Q6R2W3 1325 aa20.92■□□□□ 0.94
DDX56-201ENST00000258772 ABCC10Q5T3U5 1492 aa20.92■□□□□ 0.94
DDX56-201ENST00000258772 USP47Q96K76 1375 aa20.91■□□□□ 0.94
DDX56-201ENST00000258772 ATP10BO94823 1461 aa20.91■□□□□ 0.94
DDX56-201ENST00000258772 ZNF326Q5BKZ1 582 aaKnown RBP20.9■□□□□ 0.94
DDX56-201ENST00000258772 BCORL1Q5H9F3 1711 aa20.9■□□□□ 0.94
DDX56-201ENST00000258772 SHANK2Q9UPX8 1470 aa20.9■□□□□ 0.94
DDX56-201ENST00000258772 NUP155O75694 1391 aa20.88■□□□□ 0.93
DDX56-201ENST00000258772 C9orf84Q5VXU9 1444 aa20.88■□□□□ 0.93
DDX56-201ENST00000258772 DHX29Q7Z478 1369 aaKnown RBP20.88■□□□□ 0.93
DDX56-201ENST00000258772 KDM5CP41229 1560 aa20.86■□□□□ 0.93
DDX56-201ENST00000258772 ARID4BQ4LE39 1312 aaPredicted RBP20.86■□□□□ 0.93
DDX56-201ENST00000258772 UHRF1BP1Q6BDS2 1440 aa20.86■□□□□ 0.93
DDX56-201ENST00000258772 TSPY4P0CV99 314 aa20.86■□□□□ 0.93
DDX56-201ENST00000258772 TSPY10P0CW01 314 aa20.86■□□□□ 0.93
DDX56-201ENST00000258772 PPP4R2Q9NY27 417 aa20.84■□□□□ 0.93
DDX56-201ENST00000258772 KDM5DQ9BY66 1539 aa20.83■□□□□ 0.92
DDX56-201ENST00000258772 POLR3GLQ9BT43 218 aa20.82■□□□□ 0.92
DDX56-201ENST00000258772 RALGAPBQ86X10 1494 aa20.81■□□□□ 0.92
DDX56-201ENST00000258772 ARHGEF12Q9NZN5 1544 aa20.8■□□□□ 0.92
DDX56-201ENST00000258772 HNRNPMP52272 730 aaKnown RBP eCLIP20.8■□□□□ 0.92
DDX56-201ENST00000258772 ARHGEF5Q12774 1597 aa20.79■□□□□ 0.92
DDX56-201ENST00000258772 KIF15Q9NS87 1388 aa20.79■□□□□ 0.92
DDX56-201ENST00000258772 PTPRGP23470 1445 aa20.78■□□□□ 0.92
DDX56-201ENST00000258772 CARD11Q9BXL7 1154 aa20.78■□□□□ 0.92
DDX56-201ENST00000258772 ROCK2O75116 1388 aaKnown RBP20.77■□□□□ 0.92
DDX56-201ENST00000258772 CNGB1Q14028 1251 aaPredicted RBP20.75■□□□□ 0.91
DDX56-201ENST00000258772 KDM2AQ9Y2K7 1162 aa20.75■□□□□ 0.91
DDX56-201ENST00000258772 CDC42BPBQ9Y5S2 1711 aa20.72■□□□□ 0.91
DDX56-201ENST00000258772 DCAF11Q8TEB1 546 aa20.72■□□□□ 0.91
DDX56-201ENST00000258772 SMG6Q86US8 1419 aaKnown RBP20.72■□□□□ 0.91
DDX56-201ENST00000258772 ST20-MTHFSA0A0A6YYL1 179 aa20.71■□□□□ 0.91
DDX56-201ENST00000258772 RSPH4AQ5TD94 716 aa20.71■□□□□ 0.91
DDX56-201ENST00000258772 CCDC141Q6ZP82 1450 aa20.71■□□□□ 0.91
DDX56-201ENST00000258772 SAMD9LQ8IVG5 1584 aa20.71■□□□□ 0.91
DDX56-201ENST00000258772 PNISRQ8TF01 805 aaKnown RBP20.69■□□□□ 0.9
DDX56-201ENST00000258772 PREX2Q70Z35 1606 aa20.69■□□□□ 0.9
DDX56-201ENST00000258772 B4GALNT3Q6L9W6 998 aa20.69■□□□□ 0.9
DDX56-201ENST00000258772 FAM135AQ9P2D6 1515 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms