RNA–Protein interactions for RNA: ENST00000253048.9

ZC3H4-201, Transcript of zinc finger CCCH-type containing 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene ZC3H4, Length 6,119 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4-201ENST00000253048 TAF7LQ5H9L4 462 aa18.44■□□□□ 0.54
ZC3H4-201ENST00000253048 FRAT1Q92837 279 aaPredicted RBP18.44■□□□□ 0.54
ZC3H4-201ENST00000253048 CEP164Q9UPV0 1460 aa18.43■□□□□ 0.54
ZC3H4-201ENST00000253048 WASHC2CQ9Y4E1 1318 aa18.43■□□□□ 0.54
ZC3H4-201ENST00000253048 KIF3BO15066 747 aa18.41■□□□□ 0.54
ZC3H4-201ENST00000253048 FOXD1Q16676 465 aa18.41■□□□□ 0.54
ZC3H4-201ENST00000253048 FHAD1B1AJZ9 1412 aa18.41■□□□□ 0.54
ZC3H4-201ENST00000253048 CHMP3Q9Y3E7 222 aa18.39■□□□□ 0.53
ZC3H4-201ENST00000253048 GORABQ5T7V8 394 aa18.39■□□□□ 0.53
ZC3H4-201ENST00000253048 CHMP4AQ9BY43 222 aa18.38■□□□□ 0.53
ZC3H4-201ENST00000253048 KRI1Q8N9T8 703 aaKnown RBP18.37■□□□□ 0.53
ZC3H4-201ENST00000253048 SENP3-EIF4A1A0A087X0R7 540 aa18.37■□□□□ 0.53
ZC3H4-201ENST00000253048 SOGA1O94964 1423 aa18.36■□□□□ 0.53
ZC3H4-201ENST00000253048 GNL2Q13823 731 aaKnown RBP18.36■□□□□ 0.53
ZC3H4-201ENST00000253048 FRAT2O75474 233 aaPredicted RBP18.35■□□□□ 0.53
ZC3H4-201ENST00000253048 AMPHP49418 695 aa18.34■□□□□ 0.53
ZC3H4-201ENST00000253048 SPAG9O60271 1321 aaKnown RBP18.34■□□□□ 0.53
ZC3H4-201ENST00000253048 NUTM2DQ5VT03 806 aaPredicted RBP18.34■□□□□ 0.53
ZC3H4-201ENST00000253048 TRIM44Q96DX7 344 aaPredicted RBP18.33■□□□□ 0.53
ZC3H4-201ENST00000253048 BAZ1AQ9NRL2 1556 aaPredicted RBP18.33■□□□□ 0.52
ZC3H4-201ENST00000253048 PRM3Q9NNZ6 103 aa18.32■□□□□ 0.52
ZC3H4-201ENST00000253048 NUTM2FA1L443 756 aa18.32■□□□□ 0.52
ZC3H4-201ENST00000253048 LTV1Q96GA3 475 aaPredicted RBP18.32■□□□□ 0.52
ZC3H4-201ENST00000253048 IRX6P78412 446 aaPredicted RBP18.31■□□□□ 0.52
ZC3H4-201ENST00000253048 GOLGA6L6A8MZA4 724 aa18.31■□□□□ 0.52
ZC3H4-201ENST00000253048 CALD1Q05682 793 aaKnown RBP18.31■□□□□ 0.52
ZC3H4-201ENST00000253048 TDRD9Q8NDG6 1382 aaKnown RBP18.31■□□□□ 0.52
ZC3H4-201ENST00000253048 CEP162Q5TB80 1403 aa18.3■□□□□ 0.52
ZC3H4-201ENST00000253048 SF3B2Q13435 895 aaKnown RBP18.3■□□□□ 0.52
ZC3H4-201ENST00000253048 DDRGK1Q96HY6 314 aa18.29■□□□□ 0.52
ZC3H4-201ENST00000253048 MCCP23508 829 aa18.28■□□□□ 0.52
ZC3H4-201ENST00000253048 PTMAP06454 111 aaKnown RBP18.28■□□□□ 0.52
ZC3H4-201ENST00000253048 CWC22Q9HCG8 908 aaKnown RBP18.28■□□□□ 0.52
ZC3H4-201ENST00000253048 FAM69CQ0P6D2 419 aa18.27■□□□□ 0.52
ZC3H4-201ENST00000253048 TERF2IPQ9NYB0 399 aa18.27■□□□□ 0.52
ZC3H4-201ENST00000253048 EIF3AQ14152 1382 aaKnown RBP18.26■□□□□ 0.51
ZC3H4-201ENST00000253048 STK31Q9BXU1 1019 aa18.26■□□□□ 0.51
ZC3H4-201ENST00000253048 MIER1Q8N108 512 aa18.25■□□□□ 0.51
ZC3H4-201ENST00000253048 GOLGA6L4A6NEF3 574 aa18.25■□□□□ 0.51
ZC3H4-201ENST00000253048 PKD2Q13563 968 aa18.25■□□□□ 0.51
ZC3H4-201ENST00000253048 CTDP1Q9Y5B0 961 aaPredicted RBP18.24■□□□□ 0.51
ZC3H4-201ENST00000253048 ANP32EQ9BTT0 268 aa18.23■□□□□ 0.51
ZC3H4-201ENST00000253048 TRIM34Q9BYJ4 488 aa18.23■□□□□ 0.51
ZC3H4-201ENST00000253048 HDAC5Q9UQL6 1122 aa18.23■□□□□ 0.51
ZC3H4-201ENST00000253048 SMARCA2P51531 1590 aa18.23■□□□□ 0.51
ZC3H4-201ENST00000253048 ATF3P18847 181 aa18.22■□□□□ 0.51
ZC3H4-201ENST00000253048 SYTL4Q96C24 671 aaPredicted RBP18.22■□□□□ 0.51
ZC3H4-201ENST00000253048 ANKRD30AQ9BXX3 1397 aa18.21■□□□□ 0.51
ZC3H4-201ENST00000253048 VPS53Q5VIR6 699 aa18.21■□□□□ 0.51
ZC3H4-201ENST00000253048 HNRNPMP52272 730 aaKnown RBP eCLIP18.21■□□□□ 0.518e-12■■■■■ 54.4
ZC3H4-201ENST00000253048 KIAA1211Q6ZU35 1233 aa18.2■□□□□ 0.5
ZC3H4-201ENST00000253048 U2AF1L5P0DN76 240 aaPredicted RBP18.2■□□□□ 0.5
ZC3H4-201ENST00000253048 U2AF1Q01081 240 aaKnown RBP eCLIP18.2■□□□□ 0.5
ZC3H4-201ENST00000253048 C1orf141Q5JVX7 400 aa18.2■□□□□ 0.5
ZC3H4-201ENST00000253048 APBB1O00213 710 aa18.19■□□□□ 0.5
ZC3H4-201ENST00000253048 HSP90AB1P08238 724 aaKnown RBP18.18■□□□□ 0.5
ZC3H4-201ENST00000253048 PLCB2Q00722 1185 aa18.18■□□□□ 0.5
ZC3H4-201ENST00000253048 JPH4Q96JJ6 628 aa18.18■□□□□ 0.5
ZC3H4-201ENST00000253048 NRDCO43847 1150 aa18.18■□□□□ 0.5
ZC3H4-201ENST00000253048 GPATCH3Q96I76 525 aa18.18■□□□□ 0.5
ZC3H4-201ENST00000253048 NUP155O75694 1391 aa18.18■□□□□ 0.5
ZC3H4-201ENST00000253048 IPO8O15397 1037 aaKnown RBP18.17■□□□□ 0.5
ZC3H4-201ENST00000253048 FBXW7Q969H0 707 aa18.17■□□□□ 0.5
ZC3H4-201ENST00000253048 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.16■□□□□ 0.5
ZC3H4-201ENST00000253048 ARHGAP35Q9NRY4 1499 aa18.16■□□□□ 0.5
ZC3H4-201ENST00000253048 NBR1Q14596 966 aa18.15■□□□□ 0.5
ZC3H4-201ENST00000253048 ROCK2O75116 1388 aaKnown RBP18.15■□□□□ 0.5
ZC3H4-201ENST00000253048 PSME1Q06323 249 aa18.15■□□□□ 0.5
ZC3H4-201ENST00000253048 NOL10Q9BSC4 688 aaKnown RBP18.15■□□□□ 0.5
ZC3H4-201ENST00000253048 RSPH4AQ5TD94 716 aa18.15■□□□□ 0.5
ZC3H4-201ENST00000253048 RGS3P49796 1198 aa18.14■□□□□ 0.49
ZC3H4-201ENST00000253048 CFAP44Q96MT7 982 aa18.14■□□□□ 0.49
ZC3H4-201ENST00000253048 KIAA2012Q0VF49 1180 aa18.13■□□□□ 0.49
ZC3H4-201ENST00000253048 TNIKQ9UKE5 1360 aa18.13■□□□□ 0.49
ZC3H4-201ENST00000253048 TTC5Q8N0Z6 440 aa18.12■□□□□ 0.49
ZC3H4-201ENST00000253048 MARCH6O60337 910 aa18.12■□□□□ 0.49
ZC3H4-201ENST00000253048 DNTTIP2Q5QJE6 756 aaKnown RBP18.12■□□□□ 0.49
ZC3H4-201ENST00000253048 SIN3AQ96ST3 1273 aa18.12■□□□□ 0.49
ZC3H4-201ENST00000253048 TOMM22Q9NS69 142 aa18.12■□□□□ 0.49
ZC3H4-201ENST00000253048 CHAF1AQ13111 956 aaPredicted RBP18.1■□□□□ 0.49
ZC3H4-201ENST00000253048 PPP1R1BQ9UD71 204 aaPredicted RBP18.1■□□□□ 0.49
ZC3H4-201ENST00000253048 TCEAL9Q9UHQ7 104 aa18.09■□□□□ 0.49
ZC3H4-201ENST00000253048 AMOTL1Q8IY63 956 aa18.09■□□□□ 0.49
ZC3H4-201ENST00000253048 FMN1Q68DA7 1419 aa18.09■□□□□ 0.49
ZC3H4-201ENST00000253048 WASHC2AQ641Q2 1341 aa18.08■□□□□ 0.49
ZC3H4-201ENST00000253048 LMOD3Q0VAK6 560 aa18.08■□□□□ 0.49
ZC3H4-201ENST00000253048 CNKSR2Q8WXI2 1034 aa18.08■□□□□ 0.49
ZC3H4-201ENST00000253048 RAD21O60216 631 aa18.07■□□□□ 0.48
ZC3H4-201ENST00000253048 L1TD1Q5T7N2 865 aaKnown RBP18.07■□□□□ 0.48
ZC3H4-201ENST00000253048 PTPRGP23470 1445 aa18.07■□□□□ 0.48
ZC3H4-201ENST00000253048 KTN1Q86UP2 1357 aaKnown RBP18.07■□□□□ 0.48
ZC3H4-201ENST00000253048 RASSF8Q8NHQ8 419 aa18.07■□□□□ 0.48
ZC3H4-201ENST00000253048 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.06■□□□□ 0.48
ZC3H4-201ENST00000253048 COG3Q96JB2 828 aa18.05■□□□□ 0.48
ZC3H4-201ENST00000253048 HSP90B1P14625 803 aaKnown RBP18.05■□□□□ 0.48
ZC3H4-201ENST00000253048 SLC4A10Q6U841 1118 aa18.04■□□□□ 0.48
ZC3H4-201ENST00000253048 TRAK1Q9UPV9 953 aa18.03■□□□□ 0.48
ZC3H4-201ENST00000253048 CADPSQ9ULU8 1353 aa18.03■□□□□ 0.48
ZC3H4-201ENST00000253048 VGFO15240 615 aaPredicted RBP18.03■□□□□ 0.48
ZC3H4-201ENST00000253048 ITPRIPQ8IWB1 547 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms