RNA–Protein interactions for RNA: ENST00000250489.8

TMEM55B-201, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TMEM55B, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM55B-201ENST00000250489 ZNF644Q9H582 1327 aaPredicted RBP36.27■■■■□ 3.4
TMEM55B-201ENST00000250489 GPATCH8Q9UKJ3 1502 aaKnown RBP36.25■■■■□ 3.39
TMEM55B-201ENST00000250489 ATP10BO94823 1461 aa36.22■■■■□ 3.39
TMEM55B-201ENST00000250489 CAMSAP2Q08AD1 1489 aa36.22■■■■□ 3.39
TMEM55B-201ENST00000250489 TONSLQ96HA7 1378 aa36.22■■■■□ 3.39
TMEM55B-201ENST00000250489 DENND4BO75064 1496 aaPredicted RBP36.21■■■■□ 3.39
TMEM55B-201ENST00000250489 CFDP1Q9UEE9 299 aaPredicted RBP36.17■■■■□ 3.38
TMEM55B-201ENST00000250489 PTPRGP23470 1445 aa36.15■■■■□ 3.38
TMEM55B-201ENST00000250489 TRIM52Q96A61 297 aa36.15■■■■□ 3.38
TMEM55B-201ENST00000250489 SHROOM2Q13796 1616 aa36.14■■■■□ 3.38
TMEM55B-201ENST00000250489 PLEKHD1A6NEE1 506 aa36.13■■■■□ 3.37
TMEM55B-201ENST00000250489 ABCC10Q5T3U5 1492 aa36.1■■■■□ 3.37
TMEM55B-201ENST00000250489 YTHDC1Q96MU7 727 aaKnown RBP36.09■■■■□ 3.37
TMEM55B-201ENST00000250489 CDC42BPAQ5VT25 1732 aa36.08■■■■□ 3.37
TMEM55B-201ENST00000250489 ADGBQ8N7X0 1667 aa36.07■■■■□ 3.36
TMEM55B-201ENST00000250489 CROCC2H7BZ55 1655 aa36.06■■■■□ 3.36
TMEM55B-201ENST00000250489 MPHOSPH9Q99550 1183 aa36.06■■■■□ 3.36
TMEM55B-201ENST00000250489 KDM5BQ9UGL1 1544 aa36.06■■■■□ 3.36
TMEM55B-201ENST00000250489 ADGRL2O95490 1459 aa36.01■■■■□ 3.36
TMEM55B-201ENST00000250489 ZNF777Q9ULD5 760 aaPredicted RBP36■■■■□ 3.35
TMEM55B-201ENST00000250489 NCOA1Q15788 1441 aa35.99■■■■□ 3.35
TMEM55B-201ENST00000250489 ERCC6L2Q5T890 1561 aa35.9■■■■□ 3.34
TMEM55B-201ENST00000250489 SHANK2Q9UPX8 1470 aa35.88■■■■□ 3.33
TMEM55B-201ENST00000250489 ANKRD30AQ9BXX3 1397 aa35.87■■■■□ 3.33
TMEM55B-201ENST00000250489 ANKRD30BQ9BXX2 1392 aa35.86■■■■□ 3.33
TMEM55B-201ENST00000250489 FOXD1Q16676 465 aa35.85■■■■□ 3.33
TMEM55B-201ENST00000250489 CLASP1Q7Z460 1538 aa35.84■■■■□ 3.33
TMEM55B-201ENST00000250489 PZPP20742 1482 aa35.83■■■■□ 3.33
TMEM55B-201ENST00000250489 ABCC2Q92887 1545 aa35.82■■■■□ 3.33
TMEM55B-201ENST00000250489 HIRIP3Q9BW71 556 aaPredicted RBP35.82■■■■□ 3.32
TMEM55B-201ENST00000250489 GTF3C3Q9Y5Q9 886 aa35.82■■■■□ 3.32
TMEM55B-201ENST00000250489 DDX10Q13206 875 aaKnown RBP35.8■■■■□ 3.32
TMEM55B-201ENST00000250489 SLC4A1APQ9BWU0 796 aaKnown RBP35.8■■■■□ 3.32
TMEM55B-201ENST00000250489 PREX2Q70Z35 1606 aa35.8■■■■□ 3.32
TMEM55B-201ENST00000250489 ARHGEF5Q12774 1597 aa35.79■■■■□ 3.32
TMEM55B-201ENST00000250489 RPRD2Q5VT52 1461 aaKnown RBP35.79■■■■□ 3.32
TMEM55B-201ENST00000250489 C9orf84Q5VXU9 1444 aa35.79■■■■□ 3.32
TMEM55B-201ENST00000250489 CDC42BPBQ9Y5S2 1711 aa35.77■■■■□ 3.32
TMEM55B-201ENST00000250489 ANKRD50Q9ULJ7 1429 aa35.74■■■■□ 3.31
TMEM55B-201ENST00000250489 SAMD9LQ8IVG5 1584 aa35.74■■■■□ 3.31
TMEM55B-201ENST00000250489 MBD5Q9P267 1494 aa35.73■■■■□ 3.31
TMEM55B-201ENST00000250489 L3MBTL2Q969R5 705 aa35.71■■■■□ 3.31
TMEM55B-201ENST00000250489 TEX14Q8IWB6 1497 aa35.69■■■■□ 3.3
TMEM55B-201ENST00000250489 TTC37Q6PGP7 1564 aa35.68■■■■□ 3.3
TMEM55B-201ENST00000250489 TSPY4P0CV99 314 aa35.67■■■■□ 3.3
TMEM55B-201ENST00000250489 TSPY10P0CW01 314 aa35.67■■■■□ 3.3
TMEM55B-201ENST00000250489 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.67■■■■□ 3.3
TMEM55B-201ENST00000250489 HNRNPMP52272 730 aaKnown RBP eCLIP35.66■■■■□ 3.3
TMEM55B-201ENST00000250489 CCDC141Q6ZP82 1450 aa35.65■■■■□ 3.3
TMEM55B-201ENST00000250489 KIAA1107Q9UPP5 1409 aa35.64■■■■□ 3.3
TMEM55B-201ENST00000250489 UHRF1BP1LA0JNW5 1464 aa35.62■■■■□ 3.29
TMEM55B-201ENST00000250489 KIF15Q9NS87 1388 aa35.59■■■■□ 3.29
TMEM55B-201ENST00000250489 KDM5DQ9BY66 1539 aa35.59■■■■□ 3.29
TMEM55B-201ENST00000250489 ARHGAP5Q13017 1502 aa35.58■■■■□ 3.29
TMEM55B-201ENST00000250489 ZCCHC11Q5TAX3 1644 aaKnown RBP35.58■■■■□ 3.29
TMEM55B-201ENST00000250489 RSPH4AQ5TD94 716 aa35.57■■■■□ 3.28
TMEM55B-201ENST00000250489 MYO5CQ9NQX4 1742 aa35.57■■■■□ 3.28
TMEM55B-201ENST00000250489 HSPA5P11021 654 aaKnown RBP35.55■■■■□ 3.28
TMEM55B-201ENST00000250489 SYCP2Q9BX26 1530 aa35.54■■■■□ 3.28
TMEM55B-201ENST00000250489 PKD2Q13563 968 aa35.54■■■■□ 3.28
TMEM55B-201ENST00000250489 MAST1Q9Y2H9 1570 aa35.52■■■■□ 3.28
TMEM55B-201ENST00000250489 NUP155O75694 1391 aa35.52■■■■□ 3.28
TMEM55B-201ENST00000250489 EIF4G2P78344 907 aaKnown RBP eCLIP35.5■■■■□ 3.27
TMEM55B-201ENST00000250489 KCNH8Q96L42 1107 aa35.49■■■■□ 3.27
TMEM55B-201ENST00000250489 NBPF8Q3BBV2 869 aa35.49■■■■□ 3.27
TMEM55B-201ENST00000250489 PLEKHH2Q8IVE3 1493 aa35.47■■■■□ 3.27
TMEM55B-201ENST00000250489 ANP32CO43423 234 aa35.44■■■■□ 3.26
TMEM55B-201ENST00000250489 PLCH2O75038 1416 aa35.4■■■■□ 3.26
TMEM55B-201ENST00000250489 CCER2I3L3R5 266 aa35.4■■■■□ 3.26
TMEM55B-201ENST00000250489 WASHC2AQ641Q2 1341 aa35.4■■■■□ 3.26
TMEM55B-201ENST00000250489 PLXNC1O60486 1568 aa35.37■■■■□ 3.25
TMEM55B-201ENST00000250489 ARHGEF12Q9NZN5 1544 aa35.34■■■■□ 3.25
TMEM55B-201ENST00000250489 FAM135AQ9P2D6 1515 aa35.32■■■■□ 3.24
TMEM55B-201ENST00000250489 UNC13BO14795 1591 aa35.31■■■■□ 3.24
TMEM55B-201ENST00000250489 SPATA31E1Q6ZUB1 1445 aa35.31■■■■□ 3.24
TMEM55B-201ENST00000250489 ABCC1P33527 1531 aa35.28■■■■□ 3.24
TMEM55B-201ENST00000250489 EFCAB2Q5VUJ9 269 aa35.27■■■■□ 3.24
TMEM55B-201ENST00000250489 CCDC7Q96M83 1385 aa35.23■■■■□ 3.23
TMEM55B-201ENST00000250489 ARAP3Q8WWN8 1544 aa35.23■■■■□ 3.23
TMEM55B-201ENST00000250489 DUOX2Q9NRD8 1548 aa35.22■■■■□ 3.23
TMEM55B-201ENST00000250489 UHRF1BP1Q6BDS2 1440 aa35.22■■■■□ 3.23
TMEM55B-201ENST00000250489 C11orf95C9JLR9 678 aaPredicted RBP35.22■■■■□ 3.23
TMEM55B-201ENST00000250489 CNTLNQ9NXG0 1405 aa35.21■■■■□ 3.23
TMEM55B-201ENST00000250489 POLR1AO95602 1720 aaPredicted RBP35.2■■■■□ 3.23
TMEM55B-201ENST00000250489 WDR7Q9Y4E6 1490 aa35.19■■■■□ 3.22
TMEM55B-201ENST00000250489 IQGAP3Q86VI3 1631 aa35.17■■■■□ 3.22
TMEM55B-201ENST00000250489 ERBINQ96RT1 1412 aa35.16■■■■□ 3.22
TMEM55B-201ENST00000250489 TRAPPC8Q9Y2L5 1435 aa35.15■■■■□ 3.22
TMEM55B-201ENST00000250489 MAGI2Q86UL8 1455 aa35.13■■■■□ 3.21
TMEM55B-201ENST00000250489 RALGAPBQ86X10 1494 aa35.13■■■■□ 3.21
TMEM55B-201ENST00000250489 ZNF326Q5BKZ1 582 aaKnown RBP35.12■■■■□ 3.21
TMEM55B-201ENST00000250489 KDM5CP41229 1560 aa35.09■■■■□ 3.21
TMEM55B-201ENST00000250489 KIF7Q2M1P5 1343 aa35.09■■■■□ 3.21
TMEM55B-201ENST00000250489 USP47Q96K76 1375 aa35.09■■■■□ 3.21
TMEM55B-201ENST00000250489 ABCA9Q8IUA7 1624 aa35.07■■■■□ 3.2
TMEM55B-201ENST00000250489 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.06■■■■□ 3.2
TMEM55B-201ENST00000250489 PLA2R1Q13018 1463 aa35.04■■■■□ 3.2
TMEM55B-201ENST00000250489 CCDC144AA2RUR9 1427 aa35.04■■■■□ 3.2
TMEM55B-201ENST00000250489 RTEL1-TNFRSF6BF6WH68 1400 aa35.04■■■■□ 3.2
TMEM55B-201ENST00000250489 ZFYVE16Q7Z3T8 1539 aa35.02■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms