RNA–Protein interactions for RNA: ENST00000249806.10

CLN6-201, Transcript of CLN6, transmembrane ER protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN6, Length 2,243 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-201ENST00000249806 CFDP1Q9UEE9 299 aaPredicted RBP31.06■■■□□ 2.56
CLN6-201ENST00000249806 ABCA8O94911 1581 aa31.05■■■□□ 2.56
CLN6-201ENST00000249806 GPATCH8Q9UKJ3 1502 aaKnown RBP31.04■■■□□ 2.56
CLN6-201ENST00000249806 ROCK1Q13464 1354 aa31.03■■■□□ 2.56
CLN6-201ENST00000249806 GTF3C3Q9Y5Q9 886 aa31.03■■■□□ 2.56
CLN6-201ENST00000249806 HIRIP3Q9BW71 556 aaPredicted RBP31.02■■■□□ 2.56
CLN6-201ENST00000249806 MPHOSPH9Q99550 1183 aa31.01■■■□□ 2.56
CLN6-201ENST00000249806 ADCY10Q96PN6 1610 aa31.01■■■□□ 2.55
CLN6-201ENST00000249806 ZNF777Q9ULD5 760 aaPredicted RBP31.01■■■□□ 2.55
CLN6-201ENST00000249806 ATP10BO94823 1461 aa31■■■□□ 2.55
CLN6-201ENST00000249806 PLEKHD1A6NEE1 506 aa31■■■□□ 2.55
CLN6-201ENST00000249806 CAMSAP2Q08AD1 1489 aa30.99■■■□□ 2.55
CLN6-201ENST00000249806 CHD1O14646 1710 aa30.99■■■□□ 2.55
CLN6-201ENST00000249806 ITSN2Q9NZM3 1697 aa30.98■■■□□ 2.55
CLN6-201ENST00000249806 FOXD1Q16676 465 aa30.94■■■□□ 2.54
CLN6-201ENST00000249806 PTPRGP23470 1445 aa30.94■■■□□ 2.54
CLN6-201ENST00000249806 DDX10Q13206 875 aaKnown RBP30.93■■■□□ 2.54
CLN6-201ENST00000249806 KDM5BQ9UGL1 1544 aa30.91■■■□□ 2.54
CLN6-201ENST00000249806 CDC42BPAQ5VT25 1732 aa30.86■■■□□ 2.53
CLN6-201ENST00000249806 ABCC10Q5T3U5 1492 aa30.85■■■□□ 2.53
CLN6-201ENST00000249806 NCOA1Q15788 1441 aa30.85■■■□□ 2.53
CLN6-201ENST00000249806 SLC4A1APQ9BWU0 796 aaKnown RBP30.8■■■□□ 2.52
CLN6-201ENST00000249806 ADGBQ8N7X0 1667 aa30.79■■■□□ 2.52
CLN6-201ENST00000249806 CROCC2H7BZ55 1655 aa30.78■■■□□ 2.52
CLN6-201ENST00000249806 SHROOM2Q13796 1616 aa30.77■■■□□ 2.52
CLN6-201ENST00000249806 ANKRD30BQ9BXX2 1392 aa30.77■■■□□ 2.52
CLN6-201ENST00000249806 ADGRL2O95490 1459 aa30.75■■■□□ 2.51
CLN6-201ENST00000249806 L3MBTL2Q969R5 705 aa30.75■■■□□ 2.51
CLN6-201ENST00000249806 KCNH8Q96L42 1107 aa30.75■■■□□ 2.51
CLN6-201ENST00000249806 ERCC6L2Q5T890 1561 aa30.73■■■□□ 2.51
CLN6-201ENST00000249806 ANKRD30AQ9BXX3 1397 aa30.72■■■□□ 2.51
CLN6-201ENST00000249806 PZPP20742 1482 aa30.7■■■□□ 2.5
CLN6-201ENST00000249806 HNRNPMP52272 730 aaKnown RBP eCLIP30.67■■■□□ 2.5
CLN6-201ENST00000249806 RPRD2Q5VT52 1461 aaKnown RBP30.67■■■□□ 2.5
CLN6-201ENST00000249806 C9orf84Q5VXU9 1444 aa30.64■■■□□ 2.5
CLN6-201ENST00000249806 ANKRD50Q9ULJ7 1429 aa30.64■■■□□ 2.5
CLN6-201ENST00000249806 TSPY4P0CV99 314 aa30.63■■■□□ 2.49
CLN6-201ENST00000249806 TSPY10P0CW01 314 aa30.63■■■□□ 2.49
CLN6-201ENST00000249806 CDC42BPBQ9Y5S2 1711 aa30.61■■■□□ 2.49
CLN6-201ENST00000249806 SHANK2Q9UPX8 1470 aa30.6■■■□□ 2.49
CLN6-201ENST00000249806 HSPA5P11021 654 aaKnown RBP30.6■■■□□ 2.49
CLN6-201ENST00000249806 MBD5Q9P267 1494 aa30.58■■■□□ 2.49
CLN6-201ENST00000249806 TEX14Q8IWB6 1497 aa30.57■■■□□ 2.48
CLN6-201ENST00000249806 ABCC2Q92887 1545 aa30.56■■■□□ 2.48
CLN6-201ENST00000249806 PKD2Q13563 968 aa30.56■■■□□ 2.48
CLN6-201ENST00000249806 NBPF8Q3BBV2 869 aa30.56■■■□□ 2.48
CLN6-201ENST00000249806 SAMD9LQ8IVG5 1584 aa30.56■■■□□ 2.48
CLN6-201ENST00000249806 PREX2Q70Z35 1606 aa30.56■■■□□ 2.48
CLN6-201ENST00000249806 KIAA1107Q9UPP5 1409 aa30.54■■■□□ 2.48
CLN6-201ENST00000249806 EIF4G2P78344 907 aaKnown RBP eCLIP30.54■■■□□ 2.482e-6■■□□□ 13.4
CLN6-201ENST00000249806 ARHGEF5Q12774 1597 aa30.53■■■□□ 2.48
CLN6-201ENST00000249806 ANP32CO43423 234 aa30.53■■■□□ 2.48
CLN6-201ENST00000249806 CLASP1Q7Z460 1538 aa30.52■■■□□ 2.48
CLN6-201ENST00000249806 TTC37Q6PGP7 1564 aa30.51■■■□□ 2.48
CLN6-201ENST00000249806 NUP155O75694 1391 aa30.51■■■□□ 2.47
CLN6-201ENST00000249806 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.5■■■□□ 2.472e-6■■■■□ 19.9
CLN6-201ENST00000249806 KIF15Q9NS87 1388 aa30.5■■■□□ 2.47
CLN6-201ENST00000249806 WASHC2AQ641Q2 1341 aa30.48■■■□□ 2.47
CLN6-201ENST00000249806 CCDC141Q6ZP82 1450 aa30.47■■■□□ 2.47
CLN6-201ENST00000249806 ARHGAP5Q13017 1502 aa30.45■■■□□ 2.47
CLN6-201ENST00000249806 RSPH4AQ5TD94 716 aa30.43■■■□□ 2.46
CLN6-201ENST00000249806 SYCP2Q9BX26 1530 aa30.42■■■□□ 2.46
CLN6-201ENST00000249806 CCER2I3L3R5 266 aa30.42■■■□□ 2.46
CLN6-201ENST00000249806 C11orf95C9JLR9 678 aaPredicted RBP30.38■■■□□ 2.45
CLN6-201ENST00000249806 ZCCHC11Q5TAX3 1644 aaKnown RBP30.38■■■□□ 2.45
CLN6-201ENST00000249806 MYO5CQ9NQX4 1742 aa30.37■■■□□ 2.45
CLN6-201ENST00000249806 KDM5DQ9BY66 1539 aa30.36■■■□□ 2.45
CLN6-201ENST00000249806 UHRF1BP1LA0JNW5 1464 aa30.33■■■□□ 2.45
CLN6-201ENST00000249806 ZNF326Q5BKZ1 582 aaKnown RBP30.31■■■□□ 2.44
CLN6-201ENST00000249806 SPATA31E1Q6ZUB1 1445 aa30.3■■■□□ 2.44
CLN6-201ENST00000249806 ARHGEF12Q9NZN5 1544 aa30.27■■■□□ 2.44
CLN6-201ENST00000249806 CCDC7Q96M83 1385 aa30.27■■■□□ 2.44
CLN6-201ENST00000249806 PLCH2O75038 1416 aa30.27■■■□□ 2.44
CLN6-201ENST00000249806 MAST1Q9Y2H9 1570 aa30.26■■■□□ 2.44
CLN6-201ENST00000249806 PLEKHH2Q8IVE3 1493 aa30.25■■■□□ 2.43
CLN6-201ENST00000249806 FAM135AQ9P2D6 1515 aa30.24■■■□□ 2.43
CLN6-201ENST00000249806 EFCAB2Q5VUJ9 269 aa30.22■■■□□ 2.43
CLN6-201ENST00000249806 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.21■■■□□ 2.43
CLN6-201ENST00000249806 CNTLNQ9NXG0 1405 aa30.21■■■□□ 2.43
CLN6-201ENST00000249806 KIF7Q2M1P5 1343 aa30.18■■■□□ 2.42
CLN6-201ENST00000249806 KDM2AQ9Y2K7 1162 aa30.16■■■□□ 2.42
CLN6-201ENST00000249806 PLXNC1O60486 1568 aa30.16■■■□□ 2.42
CLN6-201ENST00000249806 USP47Q96K76 1375 aa30.14■■■□□ 2.42
CLN6-201ENST00000249806 UHRF1BP1Q6BDS2 1440 aa30.14■■■□□ 2.42
CLN6-201ENST00000249806 UNC13BO14795 1591 aa30.13■■■□□ 2.41
CLN6-201ENST00000249806 TRAPPC8Q9Y2L5 1435 aa30.13■■■□□ 2.41
CLN6-201ENST00000249806 DCAF11Q8TEB1 546 aa30.12■■■□□ 2.41
CLN6-201ENST00000249806 POLR1AO95602 1720 aaPredicted RBP30.11■■■□□ 2.41
CLN6-201ENST00000249806 SUPT16HQ9Y5B9 1047 aaKnown RBP30.11■■■□□ 2.41
CLN6-201ENST00000249806 ABCC1P33527 1531 aa30.11■■■□□ 2.41
CLN6-201ENST00000249806 DUOX2Q9NRD8 1548 aa30.09■■■□□ 2.41
CLN6-201ENST00000249806 KDM5CP41229 1560 aa30.07■■■□□ 2.4
CLN6-201ENST00000249806 BCORL1Q5H9F3 1711 aa30.06■■■□□ 2.4
CLN6-201ENST00000249806 RALGAPBQ86X10 1494 aa30.06■■■□□ 2.4
CLN6-201ENST00000249806 AFAP1Q8N556 730 aa30.06■■■□□ 2.4
CLN6-201ENST00000249806 CCDC144AA2RUR9 1427 aa30.05■■■□□ 2.4
CLN6-201ENST00000249806 CARD11Q9BXL7 1154 aa30.05■■■□□ 2.4
CLN6-201ENST00000249806 PLA2R1Q13018 1463 aa30.05■■■□□ 2.4
CLN6-201ENST00000249806 WDR7Q9Y4E6 1490 aa30.05■■■□□ 2.4
CLN6-201ENST00000249806 PRKRIP1Q9H875 184 aaPredicted RBP30.04■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms