RNA–Protein interactions for RNA: ENST00000244303.10

HIF3A-202, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 2,250 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-202ENST00000244303 ANP32CO43423 234 aa20.32■□□□□ 0.84
HIF3A-202ENST00000244303 CCER2I3L3R5 266 aa20.3■□□□□ 0.84
HIF3A-202ENST00000244303 TRIM52Q96A61 297 aa20.3■□□□□ 0.84
HIF3A-202ENST00000244303 TROQ12816 1431 aaPredicted RBP20.28■□□□□ 0.84
HIF3A-202ENST00000244303 PRG4Q92954 1404 aaPredicted RBP20.28■□□□□ 0.84
HIF3A-202ENST00000244303 DNMT1P26358 1616 aaKnown RBP20.25■□□□□ 0.83
HIF3A-202ENST00000244303 ZNF644Q9H582 1327 aaPredicted RBP20.24■□□□□ 0.83
HIF3A-202ENST00000244303 DAPK1P53355 1430 aa20.24■□□□□ 0.83
HIF3A-202ENST00000244303 MPHOSPH9Q99550 1183 aa20.24■□□□□ 0.83
HIF3A-202ENST00000244303 ABCC5O15440 1437 aa20.22■□□□□ 0.83
HIF3A-202ENST00000244303 ABCA8O94911 1581 aa20.21■□□□□ 0.83
HIF3A-202ENST00000244303 ROCK1Q13464 1354 aa20.2■□□□□ 0.82
HIF3A-202ENST00000244303 ADCY10Q96PN6 1610 aa20.18■□□□□ 0.82
HIF3A-202ENST00000244303 FOXD1Q16676 465 aa20.18■□□□□ 0.82
HIF3A-202ENST00000244303 CFDP1Q9UEE9 299 aaPredicted RBP20.18■□□□□ 0.82
HIF3A-202ENST00000244303 GPATCH8Q9UKJ3 1502 aaKnown RBP20.18■□□□□ 0.82
HIF3A-202ENST00000244303 KIF14Q15058 1648 aa20.17■□□□□ 0.82
HIF3A-202ENST00000244303 HSPA5P11021 654 aaKnown RBP20.17■□□□□ 0.82
HIF3A-202ENST00000244303 PLEKHD1A6NEE1 506 aa20.16■□□□□ 0.82
HIF3A-202ENST00000244303 ATP10BO94823 1461 aa20.16■□□□□ 0.82
HIF3A-202ENST00000244303 ITSN2Q9NZM3 1697 aa20.15■□□□□ 0.82
HIF3A-202ENST00000244303 CAMSAP2Q08AD1 1489 aa20.14■□□□□ 0.82
HIF3A-202ENST00000244303 WASHC2AQ641Q2 1341 aa20.14■□□□□ 0.82
HIF3A-202ENST00000244303 L3MBTL2Q969R5 705 aa20.14■□□□□ 0.81
HIF3A-202ENST00000244303 CHD1O14646 1710 aa20.14■□□□□ 0.81
HIF3A-202ENST00000244303 PTPRGP23470 1445 aa20.13■□□□□ 0.81
HIF3A-202ENST00000244303 FKBP8Q14318 412 aa20.13■□□□□ 0.81
HIF3A-202ENST00000244303 EIF4G2P78344 907 aaKnown RBP eCLIP20.12■□□□□ 0.81
HIF3A-202ENST00000244303 ANKRD30BQ9BXX2 1392 aa20.12■□□□□ 0.81
HIF3A-202ENST00000244303 RPRD2Q5VT52 1461 aaKnown RBP20.11■□□□□ 0.81
HIF3A-202ENST00000244303 BCANQ96GW7 911 aa20.11■□□□□ 0.81
HIF3A-202ENST00000244303 ZNF777Q9ULD5 760 aaPredicted RBP20.11■□□□□ 0.81
HIF3A-202ENST00000244303 ADGBQ8N7X0 1667 aa20.1■□□□□ 0.81
HIF3A-202ENST00000244303 TEX14Q8IWB6 1497 aa20.08■□□□□ 0.81
HIF3A-202ENST00000244303 ABCC10Q5T3U5 1492 aa20.08■□□□□ 0.8
HIF3A-202ENST00000244303 TSHZ2Q9NRE2 1034 aa20.07■□□□□ 0.8
HIF3A-202ENST00000244303 CROCC2H7BZ55 1655 aa20.06■□□□□ 0.8
HIF3A-202ENST00000244303 SLC4A1APQ9BWU0 796 aaKnown RBP20.06■□□□□ 0.8
HIF3A-202ENST00000244303 NCOA1Q15788 1441 aa20.04■□□□□ 0.8
HIF3A-202ENST00000244303 CNTLNQ9NXG0 1405 aa20.04■□□□□ 0.8
HIF3A-202ENST00000244303 NEFLP07196 543 aa20.04■□□□□ 0.8
HIF3A-202ENST00000244303 SHROOM2Q13796 1616 aa20.03■□□□□ 0.8
HIF3A-202ENST00000244303 CDC42BPAQ5VT25 1732 aa20.03■□□□□ 0.8
HIF3A-202ENST00000244303 NBPF8Q3BBV2 869 aa20.03■□□□□ 0.8
HIF3A-202ENST00000244303 PZPP20742 1482 aa20.03■□□□□ 0.8
HIF3A-202ENST00000244303 POLR1AO95602 1720 aaPredicted RBP20.02■□□□□ 0.8
HIF3A-202ENST00000244303 ADGRL2O95490 1459 aa20.02■□□□□ 0.8
HIF3A-202ENST00000244303 C11orf95C9JLR9 678 aaPredicted RBP20.01■□□□□ 0.79
HIF3A-202ENST00000244303 CCDC7Q96M83 1385 aa20■□□□□ 0.79
HIF3A-202ENST00000244303 ANKRD30AQ9BXX3 1397 aa19.99■□□□□ 0.79
HIF3A-202ENST00000244303 HNRNPUQ00839 825 aaKnown RBP eCLIP19.98■□□□□ 0.79
HIF3A-202ENST00000244303 ERCC6L2Q5T890 1561 aa19.95■□□□□ 0.78
HIF3A-202ENST00000244303 SPATA31E1Q6ZUB1 1445 aa19.95■□□□□ 0.78
HIF3A-202ENST00000244303 KIAA1107Q9UPP5 1409 aa19.93■□□□□ 0.78
HIF3A-202ENST00000244303 SHANK2Q9UPX8 1470 aa19.93■□□□□ 0.78
HIF3A-202ENST00000244303 C9orf84Q5VXU9 1444 aa19.92■□□□□ 0.78
HIF3A-202ENST00000244303 HNRNPMP52272 730 aaKnown RBP eCLIP19.91■□□□□ 0.78
HIF3A-202ENST00000244303 CCDC184Q52MB2 194 aa19.91■□□□□ 0.78
HIF3A-202ENST00000244303 MBD5Q9P267 1494 aa19.91■□□□□ 0.78
HIF3A-202ENST00000244303 ANKRD50Q9ULJ7 1429 aa19.91■□□□□ 0.78
HIF3A-202ENST00000244303 TSPY4P0CV99 314 aa19.91■□□□□ 0.78
HIF3A-202ENST00000244303 TSPY10P0CW01 314 aa19.91■□□□□ 0.78
HIF3A-202ENST00000244303 PRKRIP1Q9H875 184 aaPredicted RBP19.91■□□□□ 0.78
HIF3A-202ENST00000244303 KIF7Q2M1P5 1343 aa19.89■□□□□ 0.78
HIF3A-202ENST00000244303 ABCC2Q92887 1545 aa19.89■□□□□ 0.77
HIF3A-202ENST00000244303 CLASP1Q7Z460 1538 aa19.88■□□□□ 0.77
HIF3A-202ENST00000244303 ARHGEF5Q12774 1597 aa19.88■□□□□ 0.77
HIF3A-202ENST00000244303 PKD2Q13563 968 aa19.87■□□□□ 0.77
HIF3A-202ENST00000244303 CDC42BPBQ9Y5S2 1711 aa19.87■□□□□ 0.77
HIF3A-202ENST00000244303 PREX2Q70Z35 1606 aa19.87■□□□□ 0.77
HIF3A-202ENST00000244303 SAMD9LQ8IVG5 1584 aa19.85■□□□□ 0.77
HIF3A-202ENST00000244303 BCORL1Q5H9F3 1711 aa19.84■□□□□ 0.77
HIF3A-202ENST00000244303 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.83■□□□□ 0.76
HIF3A-202ENST00000244303 RSPH4AQ5TD94 716 aa19.82■□□□□ 0.76
HIF3A-202ENST00000244303 CCDC141Q6ZP82 1450 aa19.82■□□□□ 0.76
HIF3A-202ENST00000244303 TTC37Q6PGP7 1564 aa19.82■□□□□ 0.76
HIF3A-202ENST00000244303 ANP32EQ9BTT0 268 aa19.82■□□□□ 0.76
HIF3A-202ENST00000244303 MRS2Q9HD23 443 aa19.82■□□□□ 0.76
HIF3A-202ENST00000244303 KIF15Q9NS87 1388 aa19.82■□□□□ 0.76
HIF3A-202ENST00000244303 KDM5CP41229 1560 aa19.81■□□□□ 0.76
HIF3A-202ENST00000244303 ZNF326Q5BKZ1 582 aaKnown RBP19.81■□□□□ 0.76
HIF3A-202ENST00000244303 FAM9BQ8IZU0 186 aa19.81■□□□□ 0.76
HIF3A-202ENST00000244303 NUP155O75694 1391 aa19.81■□□□□ 0.76
HIF3A-202ENST00000244303 USP47Q96K76 1375 aa19.8■□□□□ 0.76
HIF3A-202ENST00000244303 ARHGAP5Q13017 1502 aa19.79■□□□□ 0.76
HIF3A-202ENST00000244303 KDM5DQ9BY66 1539 aa19.79■□□□□ 0.76
HIF3A-202ENST00000244303 UHRF1BP1LA0JNW5 1464 aa19.78■□□□□ 0.76
HIF3A-202ENST00000244303 IRX6P78412 446 aaPredicted RBP19.77■□□□□ 0.75
HIF3A-202ENST00000244303 SYCP2Q9BX26 1530 aa19.76■□□□□ 0.75
HIF3A-202ENST00000244303 ZCCHC11Q5TAX3 1644 aaKnown RBP19.75■□□□□ 0.75
HIF3A-202ENST00000244303 UHRF1BP1Q6BDS2 1440 aa19.75■□□□□ 0.75
HIF3A-202ENST00000244303 MYO5CQ9NQX4 1742 aa19.74■□□□□ 0.75
HIF3A-202ENST00000244303 DHX29Q7Z478 1369 aaKnown RBP19.74■□□□□ 0.75
HIF3A-202ENST00000244303 RALGAPBQ86X10 1494 aa19.74■□□□□ 0.75
HIF3A-202ENST00000244303 ARHGEF12Q9NZN5 1544 aa19.73■□□□□ 0.75
HIF3A-202ENST00000244303 ZBED9Q6R2W3 1325 aa19.73■□□□□ 0.75
HIF3A-202ENST00000244303 PLEKHH2Q8IVE3 1493 aa19.72■□□□□ 0.75
HIF3A-202ENST00000244303 POLR3GLQ9BT43 218 aa19.72■□□□□ 0.75
HIF3A-202ENST00000244303 MAST1Q9Y2H9 1570 aa19.71■□□□□ 0.75
HIF3A-202ENST00000244303 RBM19Q9Y4C8 960 aaKnown RBP19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms