RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 FGD1P98174 961 aa9.61□□□□□ -0.87
RIF1-201ENST00000243326 MAPK8IP3Q9UPT6 1336 aa9.61□□□□□ -0.87
RIF1-201ENST00000243326 RRP7AQ9Y3A4 280 aaKnown RBP9.6□□□□□ -0.87
RIF1-201ENST00000243326 PPP1R15AO75807 674 aaPredicted RBP9.6□□□□□ -0.87
RIF1-201ENST00000243326 ITPRIPQ8IWB1 547 aa9.6□□□□□ -0.87
RIF1-201ENST00000243326 CFAP53Q96M91 514 aa9.59□□□□□ -0.87
RIF1-201ENST00000243326 C11orf95C9JLR9 678 aaPredicted RBP9.59□□□□□ -0.87
RIF1-201ENST00000243326 LMOD2Q6P5Q4 547 aa9.59□□□□□ -0.87
RIF1-201ENST00000243326 CRBNQ96SW2 442 aa9.58□□□□□ -0.88
RIF1-201ENST00000243326 HSP90AA2PQ14568 343 aaPredicted RBP9.58□□□□□ -0.88
RIF1-201ENST00000243326 BCL2L13Q9BXK5 485 aa9.58□□□□□ -0.88
RIF1-201ENST00000243326 GOLGA6L4A6NEF3 574 aa9.58□□□□□ -0.88
RIF1-201ENST00000243326 PAK3O75914 559 aaPredicted RBP9.58□□□□□ -0.88
RIF1-201ENST00000243326 PDE4AP27815 886 aa9.57□□□□□ -0.88
RIF1-201ENST00000243326 CCDC9Q9Y3X0 531 aaKnown RBP9.57□□□□□ -0.88
RIF1-201ENST00000243326 STK26Q9P289 416 aa9.56□□□□□ -0.88
RIF1-201ENST00000243326 RSF1Q96T23 1441 aaPredicted RBP9.56□□□□□ -0.88
RIF1-201ENST00000243326 CCER2I3L3R5 266 aa9.56□□□□□ -0.88
RIF1-201ENST00000243326 RB1CC1Q8TDY2 1594 aa9.55□□□□□ -0.88
RIF1-201ENST00000243326 CCNB3Q8WWL7 1395 aa9.55□□□□□ -0.88
RIF1-201ENST00000243326 PRKCSHP14314 528 aaPredicted RBP9.55□□□□□ -0.88
RIF1-201ENST00000243326 CFDP1Q9UEE9 299 aaPredicted RBP9.55□□□□□ -0.88
RIF1-201ENST00000243326 RAB3GAP2Q9H2M9 1393 aa9.55□□□□□ -0.88
RIF1-201ENST00000243326 MAPK8IP2Q13387 824 aaPredicted RBP9.54□□□□□ -0.88
RIF1-201ENST00000243326 HSP90B1P14625 803 aaKnown RBP9.54□□□□□ -0.88
RIF1-201ENST00000243326 CHAF1AQ13111 956 aaPredicted RBP9.54□□□□□ -0.88
RIF1-201ENST00000243326 MORC1Q86VD1 984 aa9.54□□□□□ -0.88
RIF1-201ENST00000243326 TCERG1O14776 1098 aaKnown RBP9.54□□□□□ -0.88
RIF1-201ENST00000243326 GON4LQ3T8J9 2241 aa9.54□□□□□ -0.88
RIF1-201ENST00000243326 GSE1Q14687 1217 aa9.53□□□□□ -0.88
RIF1-201ENST00000243326 MPNDQ8N594 471 aa9.53□□□□□ -0.88
RIF1-201ENST00000243326 TNIKQ9UKE5 1360 aa9.53□□□□□ -0.88
RIF1-201ENST00000243326 EIF4G1Q04637 1599 aaKnown RBP9.53□□□□□ -0.88
RIF1-201ENST00000243326 NUDCQ9Y266 331 aa9.53□□□□□ -0.88
RIF1-201ENST00000243326 CLSTN1O94985 981 aa9.53□□□□□ -0.88
RIF1-201ENST00000243326 FAM13BQ9NYF5 915 aa9.53□□□□□ -0.88
RIF1-201ENST00000243326 NUTM2DQ5VT03 806 aaPredicted RBP9.53□□□□□ -0.88
RIF1-201ENST00000243326 POGKQ9P215 609 aa9.53□□□□□ -0.88
RIF1-201ENST00000243326 RBM10P98175 930 aaKnown RBP9.52□□□□□ -0.88
RIF1-201ENST00000243326 FBXW7Q969H0 707 aa9.52□□□□□ -0.89
RIF1-201ENST00000243326 CREBRFQ8IUR6 639 aa9.51□□□□□ -0.89
RIF1-201ENST00000243326 SETD5Q9C0A6 1442 aa9.51□□□□□ -0.89
RIF1-201ENST00000243326 CHMP3Q9Y3E7 222 aa9.51□□□□□ -0.89
RIF1-201ENST00000243326 SKAP1Q86WV1 359 aa9.51□□□□□ -0.89
RIF1-201ENST00000243326 TNNT3P45378 269 aaPredicted RBP9.5□□□□□ -0.89
RIF1-201ENST00000243326 KIAA2012Q0VF49 1180 aa9.5□□□□□ -0.89
RIF1-201ENST00000243326 GBP4Q96PP9 640 aa9.5□□□□□ -0.89
RIF1-201ENST00000243326 KTN1Q86UP2 1357 aaKnown RBP9.5□□□□□ -0.89
RIF1-201ENST00000243326 FOSBP53539 338 aa9.5□□□□□ -0.89
RIF1-201ENST00000243326 SRPK2P78362 688 aaKnown RBP9.49□□□□□ -0.89
RIF1-201ENST00000243326 PKD2Q13563 968 aa9.49□□□□□ -0.89
RIF1-201ENST00000243326 WRNQ14191 1432 aaPredicted RBP eCLIP9.49□□□□□ -0.899e-6■■■■■ 50.1
RIF1-201ENST00000243326 ZNF771Q7L3S4 317 aaPredicted RBP9.49□□□□□ -0.89
RIF1-201ENST00000243326 ZNF592Q92610 1267 aa9.49□□□□□ -0.89
RIF1-201ENST00000243326 ISY1Q9ULR0 285 aaKnown RBP9.49□□□□□ -0.89
RIF1-201ENST00000243326 ELL2O00472 640 aaPredicted RBP9.48□□□□□ -0.89
RIF1-201ENST00000243326 GOLGA6L6A8MZA4 724 aa9.48□□□□□ -0.89
RIF1-201ENST00000243326 MLECQ14165 292 aa9.48□□□□□ -0.89
RIF1-201ENST00000243326 TRIM6-TRIM34B2RNG4 842 aa9.48□□□□□ -0.89
RIF1-201ENST00000243326 CHMP7Q8WUX9 453 aaPredicted RBP9.48□□□□□ -0.89
RIF1-201ENST00000243326 PTMSP20962 102 aa9.47□□□□□ -0.89
RIF1-201ENST00000243326 U2AF1L5P0DN76 240 aaPredicted RBP9.47□□□□□ -0.89
RIF1-201ENST00000243326 U2AF1Q01081 240 aaKnown RBP eCLIP9.47□□□□□ -0.892e-6■■■■□ 20.3
RIF1-201ENST00000243326 CCDC88BA6NC98 1476 aa9.47□□□□□ -0.89
RIF1-201ENST00000243326 PATL2C9JE40 543 aaKnown RBP9.47□□□□□ -0.89
RIF1-201ENST00000243326 SLC4A10Q6U841 1118 aa9.47□□□□□ -0.89
RIF1-201ENST00000243326 SMC4Q9NTJ3 1288 aa9.47□□□□□ -0.89
RIF1-201ENST00000243326 CALD1Q05682 793 aaKnown RBP9.46□□□□□ -0.89
RIF1-201ENST00000243326 COG6Q9Y2V7 657 aa9.46□□□□□ -0.89
RIF1-201ENST00000243326 L3MBTL2Q969R5 705 aa9.46□□□□□ -0.89
RIF1-201ENST00000243326 CEP164Q9UPV0 1460 aa9.46□□□□□ -0.89
RIF1-201ENST00000243326 ZNF330Q9Y3S2 320 aaPredicted RBP9.46□□□□□ -0.89
RIF1-201ENST00000243326 RSPH6AQ9H0K4 717 aa9.46□□□□□ -0.9
RIF1-201ENST00000243326 CCAR2Q8N163 923 aaKnown RBP9.46□□□□□ -0.9
RIF1-201ENST00000243326 GNL2Q13823 731 aaKnown RBP9.46□□□□□ -0.9
RIF1-201ENST00000243326 TMF1P82094 1093 aa9.46□□□□□ -0.9
RIF1-201ENST00000243326 MSH5O43196 834 aa9.45□□□□□ -0.9
RIF1-201ENST00000243326 NPM1P06748 294 aaKnown RBP eCLIP9.45□□□□□ -0.9
RIF1-201ENST00000243326 RWDD1Q9H446 243 aaPredicted RBP9.45□□□□□ -0.9
RIF1-201ENST00000243326 R3HCC1Q9Y3T6 440 aaKnown RBP9.45□□□□□ -0.9
RIF1-201ENST00000243326 KDM4AO75164 1064 aa9.44□□□□□ -0.9
RIF1-201ENST00000243326 ZNF428Q96B54 188 aa9.44□□□□□ -0.9
RIF1-201ENST00000243326 ROCK2O75116 1388 aaKnown RBP9.44□□□□□ -0.9
RIF1-201ENST00000243326 CECR2Q9BXF3 1484 aa9.44□□□□□ -0.9
RIF1-201ENST00000243326 RRP1P56182 461 aaKnown RBP9.43□□□□□ -0.9
RIF1-201ENST00000243326 DDX49Q9Y6V7 483 aaKnown RBP9.43□□□□□ -0.9
RIF1-201ENST00000243326 HAP1P54257 671 aaPredicted RBP9.43□□□□□ -0.9
RIF1-201ENST00000243326 PLEKHD1A6NEE1 506 aa9.43□□□□□ -0.9
RIF1-201ENST00000243326 DHX37Q8IY37 1157 aaKnown RBP9.43□□□□□ -0.9
RIF1-201ENST00000243326 USP35Q9P2H5 1018 aa9.43□□□□□ -0.9
RIF1-201ENST00000243326 PKNOX2Q96KN3 472 aa9.43□□□□□ -0.9
RIF1-201ENST00000243326 EEA1Q15075 1411 aa9.42□□□□□ -0.9
RIF1-201ENST00000243326 NECTIN2Q92692 538 aa9.42□□□□□ -0.9
RIF1-201ENST00000243326 MPHOSPH9Q99550 1183 aa9.42□□□□□ -0.9
RIF1-201ENST00000243326 NUTM2FA1L443 756 aa9.42□□□□□ -0.9
RIF1-201ENST00000243326 NFKBIBQ15653 356 aa9.42□□□□□ -0.9
RIF1-201ENST00000243326 FRAT2O75474 233 aaPredicted RBP9.42□□□□□ -0.9
RIF1-201ENST00000243326 MCCP23508 829 aa9.41□□□□□ -0.9
RIF1-201ENST00000243326 DHX57Q6P158 1386 aaKnown RBP9.41□□□□□ -0.9
RIF1-201ENST00000243326 FBXO3Q9UK99 471 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms