RNA–Protein interactions for RNA: ENST00000238379.9

HDHD3-201, Transcript of haloacid dehalogenase like hydrolase domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDHD3, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3-201ENST00000238379 NAIPQ13075 1403 aa22.59■■□□□ 1.21
HDHD3-201ENST00000238379 KCNH8Q96L42 1107 aa22.59■■□□□ 1.21
HDHD3-201ENST00000238379 ZNF777Q9ULD5 760 aaPredicted RBP22.59■■□□□ 1.21
HDHD3-201ENST00000238379 PREX2Q70Z35 1606 aa22.57■■□□□ 1.2
HDHD3-201ENST00000238379 AKNAQ7Z591 1439 aa22.57■■□□□ 1.2
HDHD3-201ENST00000238379 CHIC2Q9UKJ5 165 aa22.57■■□□□ 1.2
HDHD3-201ENST00000238379 CDC42BPBQ9Y5S2 1711 aa22.56■■□□□ 1.2
HDHD3-201ENST00000238379 WDR7Q9Y4E6 1490 aa22.55■■□□□ 1.2
HDHD3-201ENST00000238379 CLSPNQ9HAW4 1339 aa22.54■■□□□ 1.2
HDHD3-201ENST00000238379 ROCK1Q13464 1354 aa22.52■■□□□ 1.2
HDHD3-201ENST00000238379 RRP7BPQ9NSQ0 103 aa22.52■■□□□ 1.2
HDHD3-201ENST00000238379 ASXL2Q76L83 1435 aa22.5■■□□□ 1.19
HDHD3-201ENST00000238379 MYO5CQ9NQX4 1742 aa22.5■■□□□ 1.19
HDHD3-201ENST00000238379 GCC2Q8IWJ2 1684 aa22.49■■□□□ 1.19
HDHD3-201ENST00000238379 SAMD9LQ8IVG5 1584 aa22.49■■□□□ 1.19
HDHD3-201ENST00000238379 NPM1P06748 294 aaKnown RBP eCLIP22.49■■□□□ 1.19
HDHD3-201ENST00000238379 PLCH2O75038 1416 aa22.48■■□□□ 1.19
HDHD3-201ENST00000238379 ARHGAP5Q13017 1502 aa22.48■■□□□ 1.19
HDHD3-201ENST00000238379 RIMBP3CA6NJZ7 1639 aa22.47■■□□□ 1.19
HDHD3-201ENST00000238379 RIMBP3BA6NNM3 1639 aa22.47■■□□□ 1.19
HDHD3-201ENST00000238379 RIMBP3Q9UFD9 1639 aa22.47■■□□□ 1.19
HDHD3-201ENST00000238379 MBD5Q9P267 1494 aa22.47■■□□□ 1.19
HDHD3-201ENST00000238379 CROCC2H7BZ55 1655 aa22.46■■□□□ 1.19
HDHD3-201ENST00000238379 ARHGEF5Q12774 1597 aa22.45■■□□□ 1.18
HDHD3-201ENST00000238379 HNRNPMP52272 730 aaKnown RBP eCLIP22.44■■□□□ 1.18
HDHD3-201ENST00000238379 ADGRL2O95490 1459 aa22.43■■□□□ 1.18
HDHD3-201ENST00000238379 SHANK2Q9UPX8 1470 aa22.43■■□□□ 1.18
HDHD3-201ENST00000238379 NCOA1Q15788 1441 aa22.43■■□□□ 1.18
HDHD3-201ENST00000238379 MAPKBP1O60336 1514 aa22.42■■□□□ 1.18
HDHD3-201ENST00000238379 CYB5RLQ6IPT4 315 aa22.42■■□□□ 1.18
HDHD3-201ENST00000238379 ABCA9Q8IUA7 1624 aa22.41■■□□□ 1.18
HDHD3-201ENST00000238379 KDM6BO15054 1643 aa22.41■■□□□ 1.18
HDHD3-201ENST00000238379 ARAP3Q8WWN8 1544 aa22.41■■□□□ 1.18
HDHD3-201ENST00000238379 RSPH4AQ5TD94 716 aa22.41■■□□□ 1.18
HDHD3-201ENST00000238379 EFCAB2Q5VUJ9 269 aa22.41■■□□□ 1.18
HDHD3-201ENST00000238379 ADGBQ8N7X0 1667 aa22.4■■□□□ 1.18
HDHD3-201ENST00000238379 KIAA1107Q9UPP5 1409 aa22.4■■□□□ 1.18
HDHD3-201ENST00000238379 PLEKHH2Q8IVE3 1493 aa22.4■■□□□ 1.18
HDHD3-201ENST00000238379 C9orf84Q5VXU9 1444 aa22.39■■□□□ 1.17
HDHD3-201ENST00000238379 CCDC141Q6ZP82 1450 aa22.39■■□□□ 1.17
HDHD3-201ENST00000238379 SYCP2Q9BX26 1530 aa22.38■■□□□ 1.17
HDHD3-201ENST00000238379 TSPY4P0CV99 314 aa22.38■■□□□ 1.17
HDHD3-201ENST00000238379 TSPY10P0CW01 314 aa22.38■■□□□ 1.17
HDHD3-201ENST00000238379 ANKRD30AQ9BXX3 1397 aa22.38■■□□□ 1.17
HDHD3-201ENST00000238379 ARHGEF12Q9NZN5 1544 aa22.35■■□□□ 1.17
HDHD3-201ENST00000238379 ACIN1Q9UKV3 1341 aaKnown RBP22.33■■□□□ 1.16
HDHD3-201ENST00000238379 ABCC1P33527 1531 aa22.32■■□□□ 1.16
HDHD3-201ENST00000238379 MAST1Q9Y2H9 1570 aa22.29■■□□□ 1.16
HDHD3-201ENST00000238379 FANCAO15360 1455 aa22.29■■□□□ 1.16
HDHD3-201ENST00000238379 TRIM52Q96A61 297 aa22.28■■□□□ 1.16
HDHD3-201ENST00000238379 ANKRD50Q9ULJ7 1429 aa22.27■■□□□ 1.16
HDHD3-201ENST00000238379 KIF15Q9NS87 1388 aa22.26■■□□□ 1.15
HDHD3-201ENST00000238379 TRAPPC8Q9Y2L5 1435 aa22.25■■□□□ 1.15
HDHD3-201ENST00000238379 DENND4BO75064 1496 aaPredicted RBP22.25■■□□□ 1.15
HDHD3-201ENST00000238379 CD109Q6YHK3 1445 aa22.24■■□□□ 1.15
HDHD3-201ENST00000238379 MPHOSPH9Q99550 1183 aa22.22■■□□□ 1.15
HDHD3-201ENST00000238379 SIN3AQ96ST3 1273 aa22.22■■□□□ 1.15
HDHD3-201ENST00000238379 PLXNC1O60486 1568 aa22.2■■□□□ 1.14
HDHD3-201ENST00000238379 ADGRL1O94910 1474 aa22.19■■□□□ 1.14
HDHD3-201ENST00000238379 SCAPERQ9BY12 1400 aa22.18■■□□□ 1.14
HDHD3-201ENST00000238379 AFAP1Q8N556 730 aa22.17■■□□□ 1.14
HDHD3-201ENST00000238379 PZPP20742 1482 aa22.16■■□□□ 1.14
HDHD3-201ENST00000238379 NEUROD1Q13562 356 aa22.15■■□□□ 1.14
HDHD3-201ENST00000238379 RTEL1-TNFRSF6BF6WH68 1400 aa22.15■■□□□ 1.14
HDHD3-201ENST00000238379 GLI2P10070 1586 aa22.15■■□□□ 1.14
HDHD3-201ENST00000238379 SPAG9O60271 1321 aaKnown RBP22.14■■□□□ 1.14
HDHD3-201ENST00000238379 CFAP74Q9C0B2 1584 aa22.14■■□□□ 1.13
HDHD3-201ENST00000238379 SLC4A1APQ9BWU0 796 aaKnown RBP22.13■■□□□ 1.13
HDHD3-201ENST00000238379 TIMELESSQ9UNS1 1208 aa22.13■■□□□ 1.13
HDHD3-201ENST00000238379 ZFYVE16Q7Z3T8 1539 aa22.12■■□□□ 1.13
HDHD3-201ENST00000238379 MAP3K4Q9Y6R4 1608 aa22.12■■□□□ 1.13
HDHD3-201ENST00000238379 DUOX2Q9NRD8 1548 aa22.11■■□□□ 1.13
HDHD3-201ENST00000238379 KDM5DQ9BY66 1539 aa22.1■■□□□ 1.13
HDHD3-201ENST00000238379 NUP155O75694 1391 aa22.09■■□□□ 1.13
HDHD3-201ENST00000238379 NEO1Q92859 1461 aa22.09■■□□□ 1.13
HDHD3-201ENST00000238379 INO80Q9ULG1 1556 aaPredicted RBP22.09■■□□□ 1.13
HDHD3-201ENST00000238379 FOXD1Q16676 465 aa22.08■■□□□ 1.13
HDHD3-201ENST00000238379 DIP2BQ9P265 1576 aa22.08■■□□□ 1.13
HDHD3-201ENST00000238379 ERBINQ96RT1 1412 aa22.07■■□□□ 1.12
HDHD3-201ENST00000238379 ANKRD30BQ9BXX2 1392 aa22.07■■□□□ 1.12
HDHD3-201ENST00000238379 ATP7AQ04656 1500 aa22.07■■□□□ 1.12
HDHD3-201ENST00000238379 ZNF518AQ6AHZ1 1483 aa22.06■■□□□ 1.12
HDHD3-201ENST00000238379 FAM69CQ0P6D2 419 aa22.06■■□□□ 1.12
HDHD3-201ENST00000238379 POGZQ7Z3K3 1410 aa22.04■■□□□ 1.12
HDHD3-201ENST00000238379 UNC13BO14795 1591 aa22.03■■□□□ 1.12
HDHD3-201ENST00000238379 PKD2Q13563 968 aa22.02■■□□□ 1.12
HDHD3-201ENST00000238379 KDM5CP41229 1560 aa22.01■■□□□ 1.11
HDHD3-201ENST00000238379 TONSLQ96HA7 1378 aa22.01■■□□□ 1.11
HDHD3-201ENST00000238379 KIDINS220Q9ULH0 1771 aa22■■□□□ 1.11
HDHD3-201ENST00000238379 FAM135AQ9P2D6 1515 aa21.99■■□□□ 1.11
HDHD3-201ENST00000238379 MAGI2Q86UL8 1455 aa21.99■■□□□ 1.11
HDHD3-201ENST00000238379 PPP1R15AO75807 674 aaPredicted RBP21.99■■□□□ 1.11
HDHD3-201ENST00000238379 MLH3Q9UHC1 1453 aa21.98■■□□□ 1.11
HDHD3-201ENST00000238379 ZNF316A6NFI3 1004 aaPredicted RBP21.97■■□□□ 1.11
HDHD3-201ENST00000238379 MYT1LQ9UL68 1186 aa21.96■■□□□ 1.11
HDHD3-201ENST00000238379 RPRD2Q5VT52 1461 aaKnown RBP21.96■■□□□ 1.11
HDHD3-201ENST00000238379 DHX29Q7Z478 1369 aaKnown RBP21.95■■□□□ 1.1
HDHD3-201ENST00000238379 IQGAP3Q86VI3 1631 aa21.95■■□□□ 1.1
HDHD3-201ENST00000238379 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.94■■□□□ 1.1
HDHD3-201ENST00000238379 RAPGEF3O95398 923 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms