RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 CDK11AQ9UQ88 783 aaPredicted RBP26.06■■□□□ 1.76
CPSF3-201ENST00000238112 DNMT1P26358 1616 aaKnown RBP26.05■■□□□ 1.76
CPSF3-201ENST00000238112 NUP153P49790 1475 aaKnown RBP26.05■■□□□ 1.76
CPSF3-201ENST00000238112 ABCC5O15440 1437 aa26.04■■□□□ 1.76
CPSF3-201ENST00000238112 RAPGEF6Q8TEU7 1601 aa26.03■■□□□ 1.76
CPSF3-201ENST00000238112 HNRNPUQ00839 825 aaKnown RBP eCLIP26.02■■□□□ 1.76
CPSF3-201ENST00000238112 ANKRD30BQ9BXX2 1392 aa26.02■■□□□ 1.76
CPSF3-201ENST00000238112 GRIN2AQ12879 1464 aa26■■□□□ 1.75
CPSF3-201ENST00000238112 RPRD2Q5VT52 1461 aaKnown RBP26■■□□□ 1.75
CPSF3-201ENST00000238112 CNTLNQ9NXG0 1405 aa26■■□□□ 1.75
CPSF3-201ENST00000238112 ZNF644Q9H582 1327 aaPredicted RBP26■■□□□ 1.75
CPSF3-201ENST00000238112 SLC4A1APQ9BWU0 796 aaKnown RBP25.97■■□□□ 1.75
CPSF3-201ENST00000238112 NCOA1Q15788 1441 aa25.95■■□□□ 1.74
CPSF3-201ENST00000238112 EIF4G3O43432 1585 aaKnown RBP25.93■■□□□ 1.74
CPSF3-201ENST00000238112 TEX14Q8IWB6 1497 aa25.93■■□□□ 1.74
CPSF3-201ENST00000238112 CCDC7Q96M83 1385 aa25.93■■□□□ 1.74
CPSF3-201ENST00000238112 TROQ12816 1431 aaPredicted RBP25.92■■□□□ 1.74
CPSF3-201ENST00000238112 NBPF8Q3BBV2 869 aa25.91■■□□□ 1.74
CPSF3-201ENST00000238112 PRG4Q92954 1404 aaPredicted RBP25.9■■□□□ 1.74
CPSF3-201ENST00000238112 CFDP1Q9UEE9 299 aaPredicted RBP25.89■■□□□ 1.74
CPSF3-201ENST00000238112 C11orf95C9JLR9 678 aaPredicted RBP25.89■■□□□ 1.74
CPSF3-201ENST00000238112 CAMSAP2Q08AD1 1489 aa25.89■■□□□ 1.73
CPSF3-201ENST00000238112 ITSN2Q9NZM3 1697 aa25.86■■□□□ 1.73
CPSF3-201ENST00000238112 MAGI1Q96QZ7 1491 aaPredicted RBP25.85■■□□□ 1.73
CPSF3-201ENST00000238112 CHMP7Q8WUX9 453 aaPredicted RBP25.85■■□□□ 1.73
CPSF3-201ENST00000238112 PRKRIP1Q9H875 184 aaPredicted RBP25.85■■□□□ 1.73
CPSF3-201ENST00000238112 PZPP20742 1482 aa25.83■■□□□ 1.73
CPSF3-201ENST00000238112 PLB1Q6P1J6 1458 aa25.83■■□□□ 1.73
CPSF3-201ENST00000238112 GPATCH8Q9UKJ3 1502 aaKnown RBP25.82■■□□□ 1.72
CPSF3-201ENST00000238112 SPATA31E1Q6ZUB1 1445 aa25.81■■□□□ 1.72
CPSF3-201ENST00000238112 ZNF777Q9ULD5 760 aaPredicted RBP25.81■■□□□ 1.72
CPSF3-201ENST00000238112 ADGBQ8N7X0 1667 aa25.81■■□□□ 1.72
CPSF3-201ENST00000238112 CEP170Q5SW79 1584 aa25.8■■□□□ 1.72
CPSF3-201ENST00000238112 SYNJ2O15056 1496 aa25.8■■□□□ 1.72
CPSF3-201ENST00000238112 CCDC184Q52MB2 194 aa25.8■■□□□ 1.72
CPSF3-201ENST00000238112 KIF7Q2M1P5 1343 aa25.79■■□□□ 1.72
CPSF3-201ENST00000238112 CARMIL2Q6F5E8 1435 aa25.78■■□□□ 1.72
CPSF3-201ENST00000238112 ADCY10Q96PN6 1610 aa25.78■■□□□ 1.72
CPSF3-201ENST00000238112 ADGRL2O95490 1459 aa25.78■■□□□ 1.72
CPSF3-201ENST00000238112 MRS2Q9HD23 443 aa25.77■■□□□ 1.72
CPSF3-201ENST00000238112 ERCC6Q03468 1493 aa25.77■■□□□ 1.72
CPSF3-201ENST00000238112 KIF14Q15058 1648 aa25.77■■□□□ 1.72
CPSF3-201ENST00000238112 KIAA1107Q9UPP5 1409 aa25.76■■□□□ 1.71
CPSF3-201ENST00000238112 RBM19Q9Y4C8 960 aaKnown RBP25.76■■□□□ 1.71
CPSF3-201ENST00000238112 ANKRD30AQ9BXX3 1397 aa25.76■■□□□ 1.71
CPSF3-201ENST00000238112 FBLN2P98095 1184 aa25.75■■□□□ 1.71
CPSF3-201ENST00000238112 FAM9BQ8IZU0 186 aa25.75■■□□□ 1.71
CPSF3-201ENST00000238112 ANP32EQ9BTT0 268 aa25.75■■□□□ 1.71
CPSF3-201ENST00000238112 POLR1AO95602 1720 aaPredicted RBP25.74■■□□□ 1.71
CPSF3-201ENST00000238112 CROCC2H7BZ55 1655 aa25.73■■□□□ 1.71
CPSF3-201ENST00000238112 IRX6P78412 446 aaPredicted RBP25.72■■□□□ 1.71
CPSF3-201ENST00000238112 JPH4Q96JJ6 628 aa25.71■■□□□ 1.71
CPSF3-201ENST00000238112 MBD5Q9P267 1494 aa25.71■■□□□ 1.71
CPSF3-201ENST00000238112 PKD2Q13563 968 aa25.7■■□□□ 1.71
CPSF3-201ENST00000238112 ERICH6BQ5W0A0 696 aa25.69■■□□□ 1.7
CPSF3-201ENST00000238112 ANKRD50Q9ULJ7 1429 aa25.68■■□□□ 1.7
CPSF3-201ENST00000238112 ZBED9Q6R2W3 1325 aa25.68■■□□□ 1.7
CPSF3-201ENST00000238112 NUP160Q12769 1436 aa25.68■■□□□ 1.7
CPSF3-201ENST00000238112 PLEKHD1A6NEE1 506 aa25.67■■□□□ 1.7
CPSF3-201ENST00000238112 ZNF326Q5BKZ1 582 aaKnown RBP25.66■■□□□ 1.7
CPSF3-201ENST00000238112 USP47Q96K76 1375 aa25.65■■□□□ 1.7
CPSF3-201ENST00000238112 SHANK2Q9UPX8 1470 aa25.62■■□□□ 1.69
CPSF3-201ENST00000238112 C9orf84Q5VXU9 1444 aa25.61■■□□□ 1.69
CPSF3-201ENST00000238112 NUP155O75694 1391 aa25.59■■□□□ 1.69
CPSF3-201ENST00000238112 ABCA8O94911 1581 aa25.59■■□□□ 1.69
CPSF3-201ENST00000238112 PPP4R2Q9NY27 417 aa25.59■■□□□ 1.69
CPSF3-201ENST00000238112 CDC42BPAQ5VT25 1732 aa25.58■■□□□ 1.69
CPSF3-201ENST00000238112 ABCC10Q5T3U5 1492 aa25.58■■□□□ 1.69
CPSF3-201ENST00000238112 POLR3GLQ9BT43 218 aa25.58■■□□□ 1.69
CPSF3-201ENST00000238112 ARID4BQ4LE39 1312 aaPredicted RBP25.57■■□□□ 1.68
CPSF3-201ENST00000238112 ATP10BO94823 1461 aa25.57■■□□□ 1.68
CPSF3-201ENST00000238112 DHX29Q7Z478 1369 aaKnown RBP25.57■■□□□ 1.68
CPSF3-201ENST00000238112 TSPY4P0CV99 314 aa25.57■■□□□ 1.68
CPSF3-201ENST00000238112 TSPY10P0CW01 314 aa25.57■■□□□ 1.68
CPSF3-201ENST00000238112 KDM5CP41229 1560 aa25.55■■□□□ 1.68
CPSF3-201ENST00000238112 BCORL1Q5H9F3 1711 aa25.54■■□□□ 1.68
CPSF3-201ENST00000238112 UHRF1BP1Q6BDS2 1440 aa25.54■■□□□ 1.68
CPSF3-201ENST00000238112 RALGAPBQ86X10 1494 aa25.52■■□□□ 1.68
CPSF3-201ENST00000238112 KDM5DQ9BY66 1539 aa25.51■■□□□ 1.67
CPSF3-201ENST00000238112 ARHGEF12Q9NZN5 1544 aa25.51■■□□□ 1.67
CPSF3-201ENST00000238112 CNGB1Q14028 1251 aaPredicted RBP25.5■■□□□ 1.67
CPSF3-201ENST00000238112 ROCK2O75116 1388 aaKnown RBP25.5■■□□□ 1.67
CPSF3-201ENST00000238112 CARD11Q9BXL7 1154 aa25.49■■□□□ 1.67
CPSF3-201ENST00000238112 KIF15Q9NS87 1388 aa25.49■■□□□ 1.67
CPSF3-201ENST00000238112 HNRNPMP52272 730 aaKnown RBP eCLIP25.46■■□□□ 1.673e-8■■■■□ 24.4
CPSF3-201ENST00000238112 ARHGEF5Q12774 1597 aa25.45■■□□□ 1.66
CPSF3-201ENST00000238112 PTPRGP23470 1445 aa25.43■■□□□ 1.66
CPSF3-201ENST00000238112 SMG6Q86US8 1419 aaKnown RBP25.43■■□□□ 1.66
CPSF3-201ENST00000238112 KDM2AQ9Y2K7 1162 aa25.42■■□□□ 1.66
CPSF3-201ENST00000238112 FANCIQ9NVI1 1328 aa25.41■■□□□ 1.66
CPSF3-201ENST00000238112 DCAF11Q8TEB1 546 aa25.4■■□□□ 1.66
CPSF3-201ENST00000238112 B4GALNT3Q6L9W6 998 aa25.39■■□□□ 1.66
CPSF3-201ENST00000238112 CCDC141Q6ZP82 1450 aa25.39■■□□□ 1.65
CPSF3-201ENST00000238112 NUDCQ9Y266 331 aa25.37■■□□□ 1.65
CPSF3-201ENST00000238112 ST20-MTHFSA0A0A6YYL1 179 aa25.37■■□□□ 1.65
CPSF3-201ENST00000238112 TMC1Q8TDI8 760 aa25.37■■□□□ 1.65
CPSF3-201ENST00000238112 RSPH4AQ5TD94 716 aa25.36■■□□□ 1.65
CPSF3-201ENST00000238112 SAMD9LQ8IVG5 1584 aa25.34■■□□□ 1.65
CPSF3-201ENST00000238112 FAM135AQ9P2D6 1515 aa25.34■■□□□ 1.65
CPSF3-201ENST00000238112 PNISRQ8TF01 805 aaKnown RBP25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 844.1 ms