RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 ZNF644Q9H582 1327 aaPredicted RBP21.95■■□□□ 1.1
CCDC47-201ENST00000225726 ABCC5O15440 1437 aa21.95■■□□□ 1.1
CCDC47-201ENST00000225726 PREX2Q70Z35 1606 aa21.94■■□□□ 1.1
CCDC47-201ENST00000225726 ROCK1Q13464 1354 aa21.93■■□□□ 1.1
CCDC47-201ENST00000225726 CROCC2H7BZ55 1655 aa21.92■■□□□ 1.1
CCDC47-201ENST00000225726 MAPKBP1O60336 1514 aa21.92■■□□□ 1.1
CCDC47-201ENST00000225726 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.91■■□□□ 1.12e-9■■■■□ 23.9
CCDC47-201ENST00000225726 TTC37Q6PGP7 1564 aa21.9■■□□□ 1.1
CCDC47-201ENST00000225726 CHIC2Q9UKJ5 165 aa21.9■■□□□ 1.1
CCDC47-201ENST00000225726 CDC42BPBQ9Y5S2 1711 aa21.9■■□□□ 1.1
CCDC47-201ENST00000225726 ADGBQ8N7X0 1667 aa21.89■■□□□ 1.09
CCDC47-201ENST00000225726 ZNF777Q9ULD5 760 aaPredicted RBP21.88■■□□□ 1.09
CCDC47-201ENST00000225726 RRP7BPQ9NSQ0 103 aa21.87■■□□□ 1.09
CCDC47-201ENST00000225726 MYO5CQ9NQX4 1742 aa21.87■■□□□ 1.09
CCDC47-201ENST00000225726 ARHGEF5Q12774 1597 aa21.84■■□□□ 1.09
CCDC47-201ENST00000225726 ADGRL2O95490 1459 aa21.84■■□□□ 1.09
CCDC47-201ENST00000225726 SAMD9LQ8IVG5 1584 aa21.83■■□□□ 1.09
CCDC47-201ENST00000225726 SHANK2Q9UPX8 1470 aa21.83■■□□□ 1.09
CCDC47-201ENST00000225726 KDM6BO15054 1643 aa21.82■■□□□ 1.08
CCDC47-201ENST00000225726 ACIN1Q9UKV3 1341 aaKnown RBP21.81■■□□□ 1.08
CCDC47-201ENST00000225726 ARHGAP5Q13017 1502 aa21.8■■□□□ 1.08
CCDC47-201ENST00000225726 WDR7Q9Y4E6 1490 aa21.8■■□□□ 1.08
CCDC47-201ENST00000225726 KCNH8Q96L42 1107 aa21.78■■□□□ 1.08
CCDC47-201ENST00000225726 NCOA1Q15788 1441 aa21.77■■□□□ 1.08
CCDC47-201ENST00000225726 MBD5Q9P267 1494 aa21.77■■□□□ 1.08
CCDC47-201ENST00000225726 PLCH2O75038 1416 aa21.76■■□□□ 1.07
CCDC47-201ENST00000225726 ANKRD30AQ9BXX3 1397 aa21.75■■□□□ 1.07
CCDC47-201ENST00000225726 PLEKHH2Q8IVE3 1493 aa21.75■■□□□ 1.07
CCDC47-201ENST00000225726 C9orf84Q5VXU9 1444 aa21.75■■□□□ 1.07
CCDC47-201ENST00000225726 CCDC141Q6ZP82 1450 aa21.74■■□□□ 1.07
CCDC47-201ENST00000225726 ARAP3Q8WWN8 1544 aa21.73■■□□□ 1.07
CCDC47-201ENST00000225726 RSPH4AQ5TD94 716 aa21.73■■□□□ 1.07
CCDC47-201ENST00000225726 SYCP2Q9BX26 1530 aa21.72■■□□□ 1.07
CCDC47-201ENST00000225726 KIAA1107Q9UPP5 1409 aa21.72■■□□□ 1.07
CCDC47-201ENST00000225726 ASXL2Q76L83 1435 aa21.71■■□□□ 1.07
CCDC47-201ENST00000225726 HNRNPMP52272 730 aaKnown RBP eCLIP21.71■■□□□ 1.07
CCDC47-201ENST00000225726 ABCA9Q8IUA7 1624 aa21.71■■□□□ 1.07
CCDC47-201ENST00000225726 TSPY4P0CV99 314 aa21.7■■□□□ 1.06
CCDC47-201ENST00000225726 TSPY10P0CW01 314 aa21.7■■□□□ 1.06
CCDC47-201ENST00000225726 MAST1Q9Y2H9 1570 aa21.69■■□□□ 1.06
CCDC47-201ENST00000225726 TRIM52Q96A61 297 aa21.68■■□□□ 1.06
CCDC47-201ENST00000225726 NPM1P06748 294 aaKnown RBP eCLIP21.67■■□□□ 1.06
CCDC47-201ENST00000225726 EFCAB2Q5VUJ9 269 aa21.67■■□□□ 1.06
CCDC47-201ENST00000225726 ABCC1P33527 1531 aa21.65■■□□□ 1.06
CCDC47-201ENST00000225726 TIMELESSQ9UNS1 1208 aa21.65■■□□□ 1.06
CCDC47-201ENST00000225726 DENND4BO75064 1496 aaPredicted RBP21.65■■□□□ 1.06
CCDC47-201ENST00000225726 SIN3AQ96ST3 1273 aa21.64■■□□□ 1.06
CCDC47-201ENST00000225726 ANKRD50Q9ULJ7 1429 aa21.63■■□□□ 1.05
CCDC47-201ENST00000225726 ARHGEF12Q9NZN5 1544 aa21.62■■□□□ 1.05
CCDC47-201ENST00000225726 MPHOSPH9Q99550 1183 aa21.61■■□□□ 1.05
CCDC47-201ENST00000225726 RIMBP3CA6NJZ7 1639 aa21.61■■□□□ 1.05
CCDC47-201ENST00000225726 RIMBP3BA6NNM3 1639 aa21.61■■□□□ 1.05
CCDC47-201ENST00000225726 RIMBP3Q9UFD9 1639 aa21.61■■□□□ 1.05
CCDC47-201ENST00000225726 NEUROD1Q13562 356 aa21.61■■□□□ 1.05
CCDC47-201ENST00000225726 KIF15Q9NS87 1388 aa21.6■■□□□ 1.05
CCDC47-201ENST00000225726 PLXNC1O60486 1568 aa21.6■■□□□ 1.05
CCDC47-201ENST00000225726 ZNF316A6NFI3 1004 aaPredicted RBP21.6■■□□□ 1.05
CCDC47-201ENST00000225726 PZPP20742 1482 aa21.57■■□□□ 1.04
CCDC47-201ENST00000225726 FANCAO15360 1455 aa21.56■■□□□ 1.04
CCDC47-201ENST00000225726 KDM5DQ9BY66 1539 aa21.54■■□□□ 1.04
CCDC47-201ENST00000225726 TRAPPC8Q9Y2L5 1435 aa21.53■■□□□ 1.04
CCDC47-201ENST00000225726 TONSLQ96HA7 1378 aa21.52■■□□□ 1.03
CCDC47-201ENST00000225726 SLC4A1APQ9BWU0 796 aaKnown RBP21.52■■□□□ 1.03
CCDC47-201ENST00000225726 CFAP74Q9C0B2 1584 aa21.5■■□□□ 1.03
CCDC47-201ENST00000225726 DUOX2Q9NRD8 1548 aa21.5■■□□□ 1.03
CCDC47-201ENST00000225726 RTEL1-TNFRSF6BF6WH68 1400 aa21.49■■□□□ 1.03
CCDC47-201ENST00000225726 ANKRD30BQ9BXX2 1392 aa21.49■■□□□ 1.03
CCDC47-201ENST00000225726 PELP1Q8IZL8 1130 aaKnown RBP21.48■■□□□ 1.03
CCDC47-201ENST00000225726 ADGRL1O94910 1474 aa21.47■■□□□ 1.03
CCDC47-201ENST00000225726 UNC13BO14795 1591 aa21.47■■□□□ 1.03
CCDC47-201ENST00000225726 CYB5RLQ6IPT4 315 aa21.46■■□□□ 1.03
CCDC47-201ENST00000225726 CD109Q6YHK3 1445 aa21.46■■□□□ 1.03
CCDC47-201ENST00000225726 ZFYVE16Q7Z3T8 1539 aa21.46■■□□□ 1.03
CCDC47-201ENST00000225726 PPP1R15AO75807 674 aaPredicted RBP21.46■■□□□ 1.03
CCDC47-201ENST00000225726 NUP155O75694 1391 aa21.45■■□□□ 1.03
CCDC47-201ENST00000225726 ERBINQ96RT1 1412 aa21.45■■□□□ 1.02
CCDC47-201ENST00000225726 FOXD1Q16676 465 aa21.44■■□□□ 1.02
CCDC47-201ENST00000225726 INO80Q9ULG1 1556 aaPredicted RBP21.44■■□□□ 1.02
CCDC47-201ENST00000225726 SPAG9O60271 1321 aaKnown RBP21.43■■□□□ 1.02
CCDC47-201ENST00000225726 SCAPERQ9BY12 1400 aa21.43■■□□□ 1.02
CCDC47-201ENST00000225726 RPRD2Q5VT52 1461 aaKnown RBP21.42■■□□□ 1.02
CCDC47-201ENST00000225726 ATP7AQ04656 1500 aa21.41■■□□□ 1.02
CCDC47-201ENST00000225726 DIEXFQ68CQ4 756 aaKnown RBP21.41■■□□□ 1.02
CCDC47-201ENST00000225726 AFAP1Q8N556 730 aa21.4■■□□□ 1.02
CCDC47-201ENST00000225726 PKD2Q13563 968 aa21.39■■□□□ 1.02
CCDC47-201ENST00000225726 FAM135AQ9P2D6 1515 aa21.39■■□□□ 1.02
CCDC47-201ENST00000225726 GLI2P10070 1586 aa21.39■■□□□ 1.01
CCDC47-201ENST00000225726 MAGI2Q86UL8 1455 aa21.38■■□□□ 1.01
CCDC47-201ENST00000225726 IQGAP3Q86VI3 1631 aa21.38■■□□□ 1.01
CCDC47-201ENST00000225726 MAP3K4Q9Y6R4 1608 aa21.38■■□□□ 1.01
CCDC47-201ENST00000225726 ZNF518AQ6AHZ1 1483 aa21.36■■□□□ 1.01
CCDC47-201ENST00000225726 NEO1Q92859 1461 aa21.36■■□□□ 1.01
CCDC47-201ENST00000225726 KDM5CP41229 1560 aa21.32■■□□□ 1
CCDC47-201ENST00000225726 POGZQ7Z3K3 1410 aa21.32■■□□□ 1
CCDC47-201ENST00000225726 TEX14Q8IWB6 1497 aa21.32■■□□□ 1
CCDC47-201ENST00000225726 KIDINS220Q9ULH0 1771 aa21.31■■□□□ 1
CCDC47-201ENST00000225726 EIF2AK4Q9P2K8 1649 aaKnown RBP21.3■■□□□ 1
CCDC47-201ENST00000225726 DIP2BQ9P265 1576 aa21.3■■□□□ 1
CCDC47-201ENST00000225726 DEPDC5O75140 1603 aa21.29■■□□□ 1
CCDC47-201ENST00000225726 L3MBTL2Q969R5 705 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms