RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 MRS2Q9HD23 443 aa17.11■□□□□ 0.33
NUP88-201ENST00000225696 HECW1Q76N89 1606 aa17.11■□□□□ 0.33
NUP88-201ENST00000225696 PPP4R2Q9NY27 417 aa17.1■□□□□ 0.33
NUP88-201ENST00000225696 NCOA1Q15788 1441 aa17.1■□□□□ 0.33
NUP88-201ENST00000225696 GCC2Q8IWJ2 1684 aa17.09■□□□□ 0.33
NUP88-201ENST00000225696 IFT140Q96RY7 1462 aa17.07■□□□□ 0.32
NUP88-201ENST00000225696 CDK13Q14004 1512 aaKnown RBP17.07■□□□□ 0.32
NUP88-201ENST00000225696 TARBP1Q13395 1621 aaKnown RBP17.07■□□□□ 0.32
NUP88-201ENST00000225696 CNGB1Q14028 1251 aaPredicted RBP17.05■□□□□ 0.32
NUP88-201ENST00000225696 KIF7Q2M1P5 1343 aa17.05■□□□□ 0.32
NUP88-201ENST00000225696 EPRSP07814 1512 aaKnown RBP17.04■□□□□ 0.32
NUP88-201ENST00000225696 ANKRD30BQ9BXX2 1392 aa17.04■□□□□ 0.32
NUP88-201ENST00000225696 ZBED9Q6R2W3 1325 aa17.04■□□□□ 0.32
NUP88-201ENST00000225696 ZNF644Q9H582 1327 aaPredicted RBP17.04■□□□□ 0.32
NUP88-201ENST00000225696 SENP3-EIF4A1A0A087X0R7 540 aa17.04■□□□□ 0.32
NUP88-201ENST00000225696 ERICH6BQ5W0A0 696 aa17.03■□□□□ 0.32
NUP88-201ENST00000225696 AKNAQ7Z591 1439 aa17.02■□□□□ 0.32
NUP88-201ENST00000225696 SPATA31E1Q6ZUB1 1445 aa17.01■□□□□ 0.31
NUP88-201ENST00000225696 TEX14Q8IWB6 1497 aa17.01■□□□□ 0.31
NUP88-201ENST00000225696 RPRD2Q5VT52 1461 aaKnown RBP17■□□□□ 0.31
NUP88-201ENST00000225696 ERICH6Q7L0X2 663 aa16.99■□□□□ 0.31
NUP88-201ENST00000225696 MIA2Q96PC5 1412 aa16.98■□□□□ 0.31
NUP88-201ENST00000225696 SLC4A1APQ9BWU0 796 aaKnown RBP16.97■□□□□ 0.31
NUP88-201ENST00000225696 DAPK1P53355 1430 aa16.96■□□□□ 0.31
NUP88-201ENST00000225696 ABCC5O15440 1437 aa16.95■□□□□ 0.3
NUP88-201ENST00000225696 POLR3GLQ9BT43 218 aa16.93■□□□□ 0.3
NUP88-201ENST00000225696 DHX29Q7Z478 1369 aaKnown RBP16.93■□□□□ 0.3
NUP88-201ENST00000225696 IQGAP2Q13576 1575 aa16.92■□□□□ 0.3
NUP88-201ENST00000225696 PAK3O75914 559 aaPredicted RBP16.91■□□□□ 0.3
NUP88-201ENST00000225696 ZNF326Q5BKZ1 582 aaKnown RBP16.91■□□□□ 0.3
NUP88-201ENST00000225696 ROCK1Q13464 1354 aa16.91■□□□□ 0.3
NUP88-201ENST00000225696 PBRM1Q86U86 1689 aa16.89■□□□□ 0.29
NUP88-201ENST00000225696 BCORL1Q5H9F3 1711 aa16.88■□□□□ 0.29
NUP88-201ENST00000225696 SMG6Q86US8 1419 aaKnown RBP16.87■□□□□ 0.29
NUP88-201ENST00000225696 PZPP20742 1482 aa16.87■□□□□ 0.29
NUP88-201ENST00000225696 DNMT1P26358 1616 aaKnown RBP16.87■□□□□ 0.29
NUP88-201ENST00000225696 POLR1AO95602 1720 aaPredicted RBP16.86■□□□□ 0.29
NUP88-201ENST00000225696 NUDCQ9Y266 331 aa16.85■□□□□ 0.29
NUP88-201ENST00000225696 USP47Q96K76 1375 aa16.85■□□□□ 0.29
NUP88-201ENST00000225696 EIF4G3O43432 1585 aaKnown RBP16.84■□□□□ 0.29
NUP88-201ENST00000225696 RNF123Q5XPI4 1314 aa16.83■□□□□ 0.29
NUP88-201ENST00000225696 NUP153P49790 1475 aaKnown RBP16.83■□□□□ 0.28
NUP88-201ENST00000225696 ADAMTS12P58397 1594 aa16.83■□□□□ 0.28
NUP88-201ENST00000225696 ZNF608Q9ULD9 1512 aaPredicted RBP16.83■□□□□ 0.28
NUP88-201ENST00000225696 NBR1Q14596 966 aa16.82■□□□□ 0.28
NUP88-201ENST00000225696 NOP58Q9Y2X3 529 aaKnown RBP16.82■□□□□ 0.28
NUP88-201ENST00000225696 MBD5Q9P267 1494 aa16.82■□□□□ 0.28
NUP88-201ENST00000225696 DEKP35659 375 aaKnown RBP16.82■□□□□ 0.28
NUP88-201ENST00000225696 PNISRQ8TF01 805 aaKnown RBP16.81■□□□□ 0.28
NUP88-201ENST00000225696 CCDC136Q96JN2 1154 aa16.81■□□□□ 0.28
NUP88-201ENST00000225696 MAGI1Q96QZ7 1491 aaPredicted RBP16.8■□□□□ 0.28
NUP88-201ENST00000225696 PKD2Q13563 968 aa16.8■□□□□ 0.28
NUP88-201ENST00000225696 PRG4Q92954 1404 aaPredicted RBP16.8■□□□□ 0.28
NUP88-201ENST00000225696 DISP1Q96F81 1524 aa16.8■□□□□ 0.28
NUP88-201ENST00000225696 ZNF777Q9ULD5 760 aaPredicted RBP16.79■□□□□ 0.28
NUP88-201ENST00000225696 CFDP1Q9UEE9 299 aaPredicted RBP16.77■□□□□ 0.28
NUP88-201ENST00000225696 KIAA1107Q9UPP5 1409 aa16.76■□□□□ 0.27
NUP88-201ENST00000225696 CAMSAP2Q08AD1 1489 aa16.76■□□□□ 0.27
NUP88-201ENST00000225696 KDM5CP41229 1560 aa16.76■□□□□ 0.27
NUP88-201ENST00000225696 TMC1Q8TDI8 760 aa16.75■□□□□ 0.27
NUP88-201ENST00000225696 KIAA0556O60303 1618 aa16.74■□□□□ 0.27
NUP88-201ENST00000225696 KDM2AQ9Y2K7 1162 aa16.72■□□□□ 0.27
NUP88-201ENST00000225696 RAPGEF6Q8TEU7 1601 aa16.71■□□□□ 0.27
NUP88-201ENST00000225696 ST20-MTHFSA0A0A6YYL1 179 aa16.71■□□□□ 0.27
NUP88-201ENST00000225696 CARD11Q9BXL7 1154 aa16.71■□□□□ 0.27
NUP88-201ENST00000225696 GPATCH8Q9UKJ3 1502 aaKnown RBP16.71■□□□□ 0.27
NUP88-201ENST00000225696 IPO9Q96P70 1041 aaKnown RBP16.71■□□□□ 0.27
NUP88-201ENST00000225696 SALL2Q9Y467 1007 aaPredicted RBP16.71■□□□□ 0.27
NUP88-201ENST00000225696 SYNJ2O15056 1496 aa16.71■□□□□ 0.27
NUP88-201ENST00000225696 KIF14Q15058 1648 aa16.71■□□□□ 0.26
NUP88-201ENST00000225696 KIAA0586Q9BVV6 1533 aa16.69■□□□□ 0.26
NUP88-201ENST00000225696 TROQ12816 1431 aaPredicted RBP16.69■□□□□ 0.26
NUP88-201ENST00000225696 PLB1Q6P1J6 1458 aa16.69■□□□□ 0.26
NUP88-201ENST00000225696 LRPPRCP42704 1394 aaKnown RBP16.68■□□□□ 0.26
NUP88-201ENST00000225696 EXOC6Q8TAG9 804 aa16.68■□□□□ 0.26
NUP88-201ENST00000225696 ARID4BQ4LE39 1312 aaPredicted RBP16.67■□□□□ 0.26
NUP88-201ENST00000225696 MYT1LQ9UL68 1186 aa16.67■□□□□ 0.26
NUP88-201ENST00000225696 GRIN2AQ12879 1464 aa16.67■□□□□ 0.26
NUP88-201ENST00000225696 ANKRD50Q9ULJ7 1429 aa16.67■□□□□ 0.26
NUP88-201ENST00000225696 ANP32AP39687 249 aaKnown RBP16.67■□□□□ 0.26
NUP88-201ENST00000225696 NUP155O75694 1391 aa16.66■□□□□ 0.26
NUP88-201ENST00000225696 UHRF1BP1Q6BDS2 1440 aa16.66■□□□□ 0.26
NUP88-201ENST00000225696 ADGRL2O95490 1459 aa16.66■□□□□ 0.26
NUP88-201ENST00000225696 RALGAPBQ86X10 1494 aa16.66■□□□□ 0.26
NUP88-201ENST00000225696 KIF15Q9NS87 1388 aa16.65■□□□□ 0.26
NUP88-201ENST00000225696 ADGBQ8N7X0 1667 aa16.65■□□□□ 0.26
NUP88-201ENST00000225696 ANKRD30AQ9BXX3 1397 aa16.64■□□□□ 0.26
NUP88-201ENST00000225696 RRP1P56182 461 aaKnown RBP16.64■□□□□ 0.25
NUP88-201ENST00000225696 DCAF11Q8TEB1 546 aa16.64■□□□□ 0.25
NUP88-201ENST00000225696 ZBTB47Q9UFB7 747 aaPredicted RBP16.63■□□□□ 0.25
NUP88-201ENST00000225696 MYBBP1AQ9BQG0 1328 aaKnown RBP16.63■□□□□ 0.25
NUP88-201ENST00000225696 ROCK2O75116 1388 aaKnown RBP16.63■□□□□ 0.25
NUP88-201ENST00000225696 NPM2Q86SE8 214 aaKnown RBP16.62■□□□□ 0.25
NUP88-201ENST00000225696 CROCC2H7BZ55 1655 aa16.62■□□□□ 0.25
NUP88-201ENST00000225696 CDCA7LQ96GN5 454 aa16.61■□□□□ 0.25
NUP88-201ENST00000225696 BRD4O60885 1362 aaPredicted RBP16.61■□□□□ 0.25
NUP88-201ENST00000225696 SKAP1Q86WV1 359 aa16.61■□□□□ 0.25
NUP88-201ENST00000225696 CHMP7Q8WUX9 453 aaPredicted RBP16.6■□□□□ 0.25
NUP88-201ENST00000225696 RCAN3Q9UKA8 241 aa16.6■□□□□ 0.25
NUP88-201ENST00000225696 NUP160Q12769 1436 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms