RNA–Protein interactions for RNA: ENST00000219084.10

CHD9-201, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 8,739 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-201ENST00000219084 CHGAP10645 457 aaKnown RBP5.63□□□□□ -1.51
CHD9-201ENST00000219084 KDM2AQ9Y2K7 1162 aa5.63□□□□□ -1.51
CHD9-201ENST00000219084 CUL7Q14999 1698 aa5.63□□□□□ -1.51
CHD9-201ENST00000219084 MSNP26038 577 aaKnown RBP5.63□□□□□ -1.51
CHD9-201ENST00000219084 NCBP3Q53F19 620 aaKnown RBP5.63□□□□□ -1.51
CHD9-201ENST00000219084 HSP90AB1P08238 724 aaKnown RBP5.63□□□□□ -1.51
CHD9-201ENST00000219084 KIF15Q9NS87 1388 aa5.63□□□□□ -1.51
CHD9-201ENST00000219084 ARID3CA6NKF2 412 aa5.62□□□□□ -1.51
CHD9-201ENST00000219084 HDGFP51858 240 aaKnown RBP5.62□□□□□ -1.51
CHD9-201ENST00000219084 TOP2BQ02880 1626 aa5.62□□□□□ -1.51
CHD9-201ENST00000219084 AAMPQ13685 434 aa5.62□□□□□ -1.51
CHD9-201ENST00000219084 HECW1Q76N89 1606 aa5.62□□□□□ -1.51
CHD9-201ENST00000219084 FYCO1Q9BQS8 1478 aa5.62□□□□□ -1.51
CHD9-201ENST00000219084 DNTTIP2Q5QJE6 756 aaKnown RBP5.61□□□□□ -1.51
CHD9-201ENST00000219084 PMFBP1Q8TBY8 1022 aa5.61□□□□□ -1.51
CHD9-201ENST00000219084 KIF21AQ7Z4S6 1674 aa5.61□□□□□ -1.51
CHD9-201ENST00000219084 PHF14O94880 888 aa5.61□□□□□ -1.51
CHD9-201ENST00000219084 HTATSF1O43719 755 aaKnown RBP5.61□□□□□ -1.51
CHD9-201ENST00000219084 CSPP1Q1MSJ5 1256 aa5.61□□□□□ -1.51
CHD9-201ENST00000219084 SCAPERQ9BY12 1400 aa5.61□□□□□ -1.51
CHD9-201ENST00000219084 HDAC5Q9UQL6 1122 aa5.61□□□□□ -1.51
CHD9-201ENST00000219084 NAP1L5Q96NT1 182 aaPredicted RBP5.61□□□□□ -1.51
CHD9-201ENST00000219084 PPP1R15AO75807 674 aaPredicted RBP5.6□□□□□ -1.51
CHD9-201ENST00000219084 RBM19Q9Y4C8 960 aaKnown RBP5.6□□□□□ -1.51
CHD9-201ENST00000219084 EHBP1L1Q8N3D4 1523 aa5.59□□□□□ -1.51
CHD9-201ENST00000219084 ZBED9Q6R2W3 1325 aa5.59□□□□□ -1.51
CHD9-201ENST00000219084 RWDD1Q9H446 243 aaPredicted RBP5.59□□□□□ -1.51
CHD9-201ENST00000219084 SALL2Q9Y467 1007 aaPredicted RBP5.59□□□□□ -1.51
CHD9-201ENST00000219084 IPO9Q96P70 1041 aaKnown RBP5.59□□□□□ -1.51
CHD9-201ENST00000219084 CHMP4CQ96CF2 233 aa5.59□□□□□ -1.52
CHD9-201ENST00000219084 BCL11AQ9H165 835 aa5.59□□□□□ -1.52
CHD9-201ENST00000219084 IRX6P78412 446 aaPredicted RBP5.58□□□□□ -1.52
CHD9-201ENST00000219084 FANCIQ9NVI1 1328 aa5.58□□□□□ -1.52
CHD9-201ENST00000219084 DDX11L8A8MPP1 907 aa5.58□□□□□ -1.52
CHD9-201ENST00000219084 DEKP35659 375 aaKnown RBP5.58□□□□□ -1.52
CHD9-201ENST00000219084 RSPH6AQ9H0K4 717 aa5.58□□□□□ -1.52
CHD9-201ENST00000219084 RCAN3Q9UKA8 241 aa5.58□□□□□ -1.52
CHD9-201ENST00000219084 UNC13AQ9UPW8 1703 aa5.58□□□□□ -1.52
CHD9-201ENST00000219084 HMGXB3Q12766 1538 aa5.58□□□□□ -1.52
CHD9-201ENST00000219084 STAC3Q96MF2 364 aa5.58□□□□□ -1.52
CHD9-201ENST00000219084 CC2D2AQ9P2K1 1620 aa5.58□□□□□ -1.52
CHD9-201ENST00000219084 KIAA2012Q0VF49 1180 aa5.58□□□□□ -1.52
CHD9-201ENST00000219084 ATAD2BQ9ULI0 1458 aa5.58□□□□□ -1.52
CHD9-201ENST00000219084 MIA2Q96PC5 1412 aa5.57□□□□□ -1.52
CHD9-201ENST00000219084 SKOR2Q2VWA4 1001 aaPredicted RBP5.57□□□□□ -1.52
CHD9-201ENST00000219084 NLRP13Q86W25 1043 aa5.57□□□□□ -1.52
CHD9-201ENST00000219084 CCDC34Q96HJ3 373 aa5.57□□□□□ -1.52
CHD9-201ENST00000219084 CTTNBP2Q8WZ74 1663 aa5.57□□□□□ -1.52
CHD9-201ENST00000219084 GOLGA6L4A6NEF3 574 aa5.56□□□□□ -1.52
CHD9-201ENST00000219084 LMOD3Q0VAK6 560 aa5.56□□□□□ -1.52
CHD9-201ENST00000219084 MYBBP1AQ9BQG0 1328 aaKnown RBP5.56□□□□□ -1.52
CHD9-201ENST00000219084 GPATCH3Q96I76 525 aa5.56□□□□□ -1.52
CHD9-201ENST00000219084 ITSN2Q9NZM3 1697 aa5.56□□□□□ -1.52
CHD9-201ENST00000219084 DHX57Q6P158 1386 aaKnown RBP5.56□□□□□ -1.52
CHD9-201ENST00000219084 MAP3K1Q13233 1512 aa5.56□□□□□ -1.52
CHD9-201ENST00000219084 HSPA5P11021 654 aaKnown RBP5.55□□□□□ -1.52
CHD9-201ENST00000219084 CENPQQ7L2Z9 268 aaPredicted RBP5.55□□□□□ -1.52
CHD9-201ENST00000219084 CNTLNQ9NXG0 1405 aa5.55□□□□□ -1.52
CHD9-201ENST00000219084 TIAM1Q13009 1591 aa5.55□□□□□ -1.52
CHD9-201ENST00000219084 TPM4P67936 248 aa5.55□□□□□ -1.52
CHD9-201ENST00000219084 MYOM3Q5VTT5 1437 aa5.55□□□□□ -1.52
CHD9-201ENST00000219084 CCDC144AA2RUR9 1427 aa5.55□□□□□ -1.52
CHD9-201ENST00000219084 CADPSQ9ULU8 1353 aa5.55□□□□□ -1.52
CHD9-201ENST00000219084 POGKQ9P215 609 aa5.55□□□□□ -1.52
CHD9-201ENST00000219084 CASKIN1Q8WXD9 1431 aa5.55□□□□□ -1.52
CHD9-201ENST00000219084 LRRC9Q6ZRR7 1453 aa5.55□□□□□ -1.52
CHD9-201ENST00000219084 DCAF11Q8TEB1 546 aa5.54□□□□□ -1.52
CHD9-201ENST00000219084 MPHOSPH9Q99550 1183 aa5.54□□□□□ -1.52
CHD9-201ENST00000219084 ROCK1Q13464 1354 aa5.54□□□□□ -1.52
CHD9-201ENST00000219084 NINLQ9Y2I6 1382 aa5.54□□□□□ -1.52
CHD9-201ENST00000219084 HMMRO75330 724 aa5.54□□□□□ -1.52
CHD9-201ENST00000219084 GOLGA6L3A6NEY3 463 aa5.54□□□□□ -1.52
CHD9-201ENST00000219084 KIAA1211Q6ZU35 1233 aa5.54□□□□□ -1.52
CHD9-201ENST00000219084 BIVM-ERCC5R4GMW8 1640 aa5.54□□□□□ -1.52
CHD9-201ENST00000219084 MORC1Q86VD1 984 aa5.54□□□□□ -1.52
CHD9-201ENST00000219084 HDGFL2Q7Z4V5 671 aaPredicted RBP5.54□□□□□ -1.52
CHD9-201ENST00000219084 LAS1LQ9Y4W2 734 aaKnown RBP5.54□□□□□ -1.52
CHD9-201ENST00000219084 RRBP1Q9P2E9 1410 aaKnown RBP5.54□□□□□ -1.52
CHD9-201ENST00000219084 RGS3P49796 1198 aa5.54□□□□□ -1.52
CHD9-201ENST00000219084 B4GALNT3Q6L9W6 998 aa5.54□□□□□ -1.52
CHD9-201ENST00000219084 KIF3AQ9Y496 699 aa5.53□□□□□ -1.52
CHD9-201ENST00000219084 NUP155O75694 1391 aa5.53□□□□□ -1.52
CHD9-201ENST00000219084 SIN3AQ96ST3 1273 aa5.53□□□□□ -1.52
CHD9-201ENST00000219084 PLEKHH2Q8IVE3 1493 aa5.53□□□□□ -1.52
CHD9-201ENST00000219084 AMER1Q5JTC6 1135 aaPredicted RBP5.53□□□□□ -1.52
CHD9-201ENST00000219084 ATP6V1DQ9Y5K8 247 aa5.53□□□□□ -1.52
CHD9-201ENST00000219084 HIRIP3Q9BW71 556 aaPredicted RBP5.53□□□□□ -1.52
CHD9-201ENST00000219084 KCNJ4P48050 445 aa5.53□□□□□ -1.52
CHD9-201ENST00000219084 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.53□□□□□ -1.52
CHD9-201ENST00000219084 FGD6Q6ZV73 1430 aa5.53□□□□□ -1.52
CHD9-201ENST00000219084 FGD1P98174 961 aa5.53□□□□□ -1.52
CHD9-201ENST00000219084 THOC2Q8NI27 1593 aaKnown RBP5.52□□□□□ -1.53
CHD9-201ENST00000219084 FANCD2Q9BXW9 1451 aa5.52□□□□□ -1.53
CHD9-201ENST00000219084 OS9Q13438 667 aaPredicted RBP5.52□□□□□ -1.53
CHD9-201ENST00000219084 FRAT1Q92837 279 aaPredicted RBP5.52□□□□□ -1.53
CHD9-201ENST00000219084 SPAG9O60271 1321 aaKnown RBP5.52□□□□□ -1.53
CHD9-201ENST00000219084 CGNL1Q0VF96 1302 aa5.52□□□□□ -1.53
CHD9-201ENST00000219084 ST18O60284 1047 aa5.52□□□□□ -1.53
CHD9-201ENST00000219084 GOLGA2Q08379 1002 aa5.52□□□□□ -1.53
CHD9-201ENST00000219084 RGL3Q3MIN7 710 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms