RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 RRP7BPQ9NSQ0 103 aa25.37■■□□□ 1.65
VRK1-201ENST00000216639 ABCC5O15440 1437 aa25.36■■□□□ 1.65
VRK1-201ENST00000216639 ZNF644Q9H582 1327 aaPredicted RBP25.36■■□□□ 1.65
VRK1-201ENST00000216639 CDC42BPAQ5VT25 1732 aa25.34■■□□□ 1.65
VRK1-201ENST00000216639 UHRF1BP1LA0JNW5 1464 aa25.33■■□□□ 1.64
VRK1-201ENST00000216639 ZNF777Q9ULD5 760 aaPredicted RBP25.31■■□□□ 1.64
VRK1-201ENST00000216639 TIMELESSQ9UNS1 1208 aa25.29■■□□□ 1.64
VRK1-201ENST00000216639 DIEXFQ68CQ4 756 aaKnown RBP25.25■■□□□ 1.63
VRK1-201ENST00000216639 CROCC2H7BZ55 1655 aa25.24■■□□□ 1.63
VRK1-201ENST00000216639 ADGBQ8N7X0 1667 aa25.24■■□□□ 1.63
VRK1-201ENST00000216639 KDM5BQ9UGL1 1544 aa25.22■■□□□ 1.63
VRK1-201ENST00000216639 ZCCHC11Q5TAX3 1644 aaKnown RBP25.22■■□□□ 1.63
VRK1-201ENST00000216639 PREX2Q70Z35 1606 aa25.22■■□□□ 1.63
VRK1-201ENST00000216639 NEUROD1Q13562 356 aa25.21■■□□□ 1.63
VRK1-201ENST00000216639 TRIM52Q96A61 297 aa25.21■■□□□ 1.63
VRK1-201ENST00000216639 SIN3AQ96ST3 1273 aa25.21■■□□□ 1.63
VRK1-201ENST00000216639 ADGRL2O95490 1459 aa25.21■■□□□ 1.63
VRK1-201ENST00000216639 OSCARQ8IYS5 282 aa25.2■■□□□ 1.63
VRK1-201ENST00000216639 KDM6BO15054 1643 aa25.2■■□□□ 1.62
VRK1-201ENST00000216639 SHANK2Q9UPX8 1470 aa25.19■■□□□ 1.62
VRK1-201ENST00000216639 ANKRD30AQ9BXX3 1397 aa25.18■■□□□ 1.62
VRK1-201ENST00000216639 NCOA1Q15788 1441 aa25.17■■□□□ 1.62
VRK1-201ENST00000216639 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.16■■□□□ 1.626e-6■■■■■ 38.2
VRK1-201ENST00000216639 CDC42BPBQ9Y5S2 1711 aa25.16■■□□□ 1.62
VRK1-201ENST00000216639 ARHGEF5Q12774 1597 aa25.15■■□□□ 1.62
VRK1-201ENST00000216639 TTC37Q6PGP7 1564 aa25.14■■□□□ 1.62
VRK1-201ENST00000216639 RSPH4AQ5TD94 716 aa25.14■■□□□ 1.61
VRK1-201ENST00000216639 TSPY4P0CV99 314 aa25.13■■□□□ 1.61
VRK1-201ENST00000216639 TSPY10P0CW01 314 aa25.13■■□□□ 1.61
VRK1-201ENST00000216639 MYO5CQ9NQX4 1742 aa25.12■■□□□ 1.61
VRK1-201ENST00000216639 ARHGAP5Q13017 1502 aa25.11■■□□□ 1.61
VRK1-201ENST00000216639 SAMD9LQ8IVG5 1584 aa25.11■■□□□ 1.61
VRK1-201ENST00000216639 C9orf84Q5VXU9 1444 aa25.11■■□□□ 1.61
VRK1-201ENST00000216639 MPHOSPH9Q99550 1183 aa25.1■■□□□ 1.61
VRK1-201ENST00000216639 TONSLQ96HA7 1378 aa25.1■■□□□ 1.61
VRK1-201ENST00000216639 KCNH8Q96L42 1107 aa25.09■■□□□ 1.61
VRK1-201ENST00000216639 CCDC141Q6ZP82 1450 aa25.08■■□□□ 1.6
VRK1-201ENST00000216639 PLEKHH2Q8IVE3 1493 aa25.08■■□□□ 1.6
VRK1-201ENST00000216639 MBD5Q9P267 1494 aa25.08■■□□□ 1.6
VRK1-201ENST00000216639 HNRNPMP52272 730 aaKnown RBP eCLIP25.06■■□□□ 1.64e-7■■□□□ 14.4
VRK1-201ENST00000216639 DENND4BO75064 1496 aaPredicted RBP25.04■■□□□ 1.6
VRK1-201ENST00000216639 ANKRD50Q9ULJ7 1429 aa25.03■■□□□ 1.6
VRK1-201ENST00000216639 PPP1R15AO75807 674 aaPredicted RBP25.03■■□□□ 1.6
VRK1-201ENST00000216639 PLCH2O75038 1416 aa25.02■■□□□ 1.6
VRK1-201ENST00000216639 KIAA1107Q9UPP5 1409 aa25.02■■□□□ 1.6
VRK1-201ENST00000216639 WDR7Q9Y4E6 1490 aa25■■□□□ 1.59
VRK1-201ENST00000216639 SYCP2Q9BX26 1530 aa25■■□□□ 1.59
VRK1-201ENST00000216639 SLC4A1APQ9BWU0 796 aaKnown RBP24.99■■□□□ 1.59
VRK1-201ENST00000216639 EFCAB2Q5VUJ9 269 aa24.98■■□□□ 1.59
VRK1-201ENST00000216639 MAST1Q9Y2H9 1570 aa24.97■■□□□ 1.59
VRK1-201ENST00000216639 KIF15Q9NS87 1388 aa24.96■■□□□ 1.59
VRK1-201ENST00000216639 ARAP3Q8WWN8 1544 aa24.96■■□□□ 1.59
VRK1-201ENST00000216639 PZPP20742 1482 aa24.94■■□□□ 1.58
VRK1-201ENST00000216639 ANKRD30BQ9BXX2 1392 aa24.92■■□□□ 1.58
VRK1-201ENST00000216639 NPM1P06748 294 aaKnown RBP eCLIP24.92■■□□□ 1.58
VRK1-201ENST00000216639 ABCC1P33527 1531 aa24.88■■□□□ 1.57
VRK1-201ENST00000216639 FOXD1Q16676 465 aa24.88■■□□□ 1.57
VRK1-201ENST00000216639 ASXL2Q76L83 1435 aa24.88■■□□□ 1.57
VRK1-201ENST00000216639 KDM5DQ9BY66 1539 aa24.87■■□□□ 1.57
VRK1-201ENST00000216639 ABCA9Q8IUA7 1624 aa24.87■■□□□ 1.57
VRK1-201ENST00000216639 PLXNC1O60486 1568 aa24.87■■□□□ 1.57
VRK1-201ENST00000216639 NUP155O75694 1391 aa24.86■■□□□ 1.57
VRK1-201ENST00000216639 RPRD2Q5VT52 1461 aaKnown RBP24.85■■□□□ 1.57
VRK1-201ENST00000216639 ARHGEF12Q9NZN5 1544 aa24.84■■□□□ 1.57
VRK1-201ENST00000216639 PKD2Q13563 968 aa24.81■■□□□ 1.56
VRK1-201ENST00000216639 DUOX2Q9NRD8 1548 aa24.79■■□□□ 1.56
VRK1-201ENST00000216639 FANCAO15360 1455 aa24.78■■□□□ 1.56
VRK1-201ENST00000216639 TRAPPC8Q9Y2L5 1435 aa24.76■■□□□ 1.55
VRK1-201ENST00000216639 L3MBTL2Q969R5 705 aa24.75■■□□□ 1.55
VRK1-201ENST00000216639 RTEL1-TNFRSF6BF6WH68 1400 aa24.75■■□□□ 1.55
VRK1-201ENST00000216639 ERBINQ96RT1 1412 aa24.75■■□□□ 1.55
VRK1-201ENST00000216639 AEBP2Q6ZN18 517 aaPredicted RBP24.75■■□□□ 1.55
VRK1-201ENST00000216639 MIER1Q8N108 512 aa24.75■■□□□ 1.55
VRK1-201ENST00000216639 UNC13BO14795 1591 aa24.74■■□□□ 1.55
VRK1-201ENST00000216639 SPAG9O60271 1321 aaKnown RBP24.72■■□□□ 1.55
VRK1-201ENST00000216639 TEX14Q8IWB6 1497 aa24.72■■□□□ 1.55
VRK1-201ENST00000216639 FAM135AQ9P2D6 1515 aa24.71■■□□□ 1.55
VRK1-201ENST00000216639 ADGRL1O94910 1474 aa24.69■■□□□ 1.54
VRK1-201ENST00000216639 ZFYVE16Q7Z3T8 1539 aa24.66■■□□□ 1.54
VRK1-201ENST00000216639 AFAP1Q8N556 730 aa24.66■■□□□ 1.54
VRK1-201ENST00000216639 CFAP74Q9C0B2 1584 aa24.65■■□□□ 1.54
VRK1-201ENST00000216639 SCAPERQ9BY12 1400 aa24.65■■□□□ 1.54
VRK1-201ENST00000216639 IQGAP3Q86VI3 1631 aa24.64■■□□□ 1.54
VRK1-201ENST00000216639 MAGI2Q86UL8 1455 aa24.63■■□□□ 1.53
VRK1-201ENST00000216639 CD109Q6YHK3 1445 aa24.62■■□□□ 1.53
VRK1-201ENST00000216639 INO80Q9ULG1 1556 aaPredicted RBP24.62■■□□□ 1.53
VRK1-201ENST00000216639 ATP7AQ04656 1500 aa24.61■■□□□ 1.53
VRK1-201ENST00000216639 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.61■■□□□ 1.53
VRK1-201ENST00000216639 EIF4G2P78344 907 aaKnown RBP eCLIP24.58■■□□□ 1.521e-6■□□□□ 9.4
VRK1-201ENST00000216639 HIRIP3Q9BW71 556 aaPredicted RBP24.58■■□□□ 1.52
VRK1-201ENST00000216639 MYT1LQ9UL68 1186 aa24.56■■□□□ 1.52
VRK1-201ENST00000216639 CENPBP07199 599 aaPredicted RBP24.55■■□□□ 1.52
VRK1-201ENST00000216639 ZNF518AQ6AHZ1 1483 aa24.55■■□□□ 1.52
VRK1-201ENST00000216639 RIMBP3CA6NJZ7 1639 aa24.54■■□□□ 1.52
VRK1-201ENST00000216639 RIMBP3BA6NNM3 1639 aa24.54■■□□□ 1.52
VRK1-201ENST00000216639 RIMBP3Q9UFD9 1639 aa24.54■■□□□ 1.52
VRK1-201ENST00000216639 DDX10Q13206 875 aaKnown RBP24.54■■□□□ 1.52
VRK1-201ENST00000216639 NBPF8Q3BBV2 869 aa24.54■■□□□ 1.52
VRK1-201ENST00000216639 CYB5RLQ6IPT4 315 aa24.53■■□□□ 1.52
VRK1-201ENST00000216639 CCDC144AA2RUR9 1427 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms