RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 ARHGAP35Q9NRY4 1499 aa18.16■□□□□ 0.5
SIX4-201ENST00000216513 NESP48681 1621 aa18.16■□□□□ 0.5
SIX4-201ENST00000216513 NUP155O75694 1391 aa18.15■□□□□ 0.5
SIX4-201ENST00000216513 SIN3AQ96ST3 1273 aa18.15■□□□□ 0.5
SIX4-201ENST00000216513 EIF5BO60841 1220 aaKnown RBP18.14■□□□□ 0.5
SIX4-201ENST00000216513 HDGFL2Q7Z4V5 671 aaPredicted RBP18.14■□□□□ 0.49
SIX4-201ENST00000216513 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.14■□□□□ 0.49
SIX4-201ENST00000216513 HSP90AA1P07900 732 aaKnown RBP18.13■□□□□ 0.49
SIX4-201ENST00000216513 ANKRD30AQ9BXX3 1397 aa18.13■□□□□ 0.49
SIX4-201ENST00000216513 TMF1P82094 1093 aa18.1■□□□□ 0.49
SIX4-201ENST00000216513 FGD5Q6ZNL6 1462 aa18.1■□□□□ 0.49
SIX4-201ENST00000216513 EVA1CP58658 441 aa18.09■□□□□ 0.49
SIX4-201ENST00000216513 MSH5O43196 834 aa18.08■□□□□ 0.49
SIX4-201ENST00000216513 GOLGA2Q08379 1002 aa18.08■□□□□ 0.49
SIX4-201ENST00000216513 CCDC136Q96JN2 1154 aa18.07■□□□□ 0.48
SIX4-201ENST00000216513 KANK4Q5T7N3 995 aaPredicted RBP18.07■□□□□ 0.48
SIX4-201ENST00000216513 LTV1Q96GA3 475 aaPredicted RBP18.06■□□□□ 0.48
SIX4-201ENST00000216513 TAOK2Q9UL54 1235 aa18.06■□□□□ 0.48
SIX4-201ENST00000216513 MRC2Q9UBG0 1479 aa18.06■□□□□ 0.48
SIX4-201ENST00000216513 CCDC18Q5T9S5 1454 aa18.06■□□□□ 0.48
SIX4-201ENST00000216513 MORC1Q86VD1 984 aa18.05■□□□□ 0.48
SIX4-201ENST00000216513 TMX4Q9H1E5 349 aaPredicted RBP18.03■□□□□ 0.48
SIX4-201ENST00000216513 RTF1Q92541 710 aaKnown RBP18.03■□□□□ 0.48
SIX4-201ENST00000216513 RSPH4AQ5TD94 716 aa18.03■□□□□ 0.48
SIX4-201ENST00000216513 NCAPD3P42695 1498 aa18.02■□□□□ 0.48
SIX4-201ENST00000216513 KLHL34Q8N239 644 aa18.02■□□□□ 0.47
SIX4-201ENST00000216513 TULP1O00294 542 aaPredicted RBP18■□□□□ 0.47
SIX4-201ENST00000216513 ATF3P18847 181 aa17.99■□□□□ 0.47
SIX4-201ENST00000216513 PIP4K2BP78356 416 aa17.99■□□□□ 0.47
SIX4-201ENST00000216513 OS9Q13438 667 aaPredicted RBP17.98■□□□□ 0.47
SIX4-201ENST00000216513 UPF2Q9HAU5 1272 aaKnown RBP17.98■□□□□ 0.47
SIX4-201ENST00000216513 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.97■□□□□ 0.47
SIX4-201ENST00000216513 PRG4Q92954 1404 aaPredicted RBP17.97■□□□□ 0.47
SIX4-201ENST00000216513 TRAK1Q9UPV9 953 aa17.97■□□□□ 0.47
SIX4-201ENST00000216513 PNNQ9H307 717 aaKnown RBP17.96■□□□□ 0.47
SIX4-201ENST00000216513 PRDM2Q13029 1718 aa17.96■□□□□ 0.47
SIX4-201ENST00000216513 AMPHP49418 695 aa17.96■□□□□ 0.46
SIX4-201ENST00000216513 FTSJ3Q8IY81 847 aaKnown RBP17.94■□□□□ 0.46
SIX4-201ENST00000216513 MPHOSPH9Q99550 1183 aa17.93■□□□□ 0.46
SIX4-201ENST00000216513 GRIN2BQ13224 1484 aa17.93■□□□□ 0.46
SIX4-201ENST00000216513 ROCK2O75116 1388 aaKnown RBP17.92■□□□□ 0.46
SIX4-201ENST00000216513 PSME1Q06323 249 aa17.91■□□□□ 0.46
SIX4-201ENST00000216513 G3V3G9 751 aa17.9■□□□□ 0.46
SIX4-201ENST00000216513 DCAF8Q5TAQ9 597 aa17.9■□□□□ 0.46
SIX4-201ENST00000216513 ISY1Q9ULR0 285 aaKnown RBP17.9■□□□□ 0.46
SIX4-201ENST00000216513 DCAF8L1A6NGE4 600 aa17.9■□□□□ 0.46
SIX4-201ENST00000216513 SYTL4Q96C24 671 aaPredicted RBP17.89■□□□□ 0.45
SIX4-201ENST00000216513 IFT140Q96RY7 1462 aa17.89■□□□□ 0.45
SIX4-201ENST00000216513 SUPT16HQ9Y5B9 1047 aaKnown RBP17.88■□□□□ 0.45
SIX4-201ENST00000216513 VPS8Q8N3P4 1428 aa17.88■□□□□ 0.45
SIX4-201ENST00000216513 NUTM2BA6NNL0 878 aaPredicted RBP17.88■□□□□ 0.45
SIX4-201ENST00000216513 NUTM2EB1AL46 878 aaPredicted RBP17.88■□□□□ 0.45
SIX4-201ENST00000216513 NUTM2AQ8IVF1 878 aaPredicted RBP17.88■□□□□ 0.45
SIX4-201ENST00000216513 TERF2IPQ9NYB0 399 aa17.87■□□□□ 0.45
SIX4-201ENST00000216513 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.87■□□□□ 0.45
SIX4-201ENST00000216513 FRAT1Q92837 279 aaPredicted RBP17.87■□□□□ 0.45
SIX4-201ENST00000216513 GTF2E1P29083 439 aaPredicted RBP17.86■□□□□ 0.45
SIX4-201ENST00000216513 VGFO15240 615 aaPredicted RBP17.85■□□□□ 0.45
SIX4-201ENST00000216513 MINK1Q8N4C8 1332 aaPredicted RBP17.84■□□□□ 0.45
SIX4-201ENST00000216513 SETD5Q9C0A6 1442 aa17.84■□□□□ 0.45
SIX4-201ENST00000216513 PROSER2Q86WR7 435 aaPredicted RBP17.84■□□□□ 0.45
SIX4-201ENST00000216513 SNAPC4Q5SXM2 1469 aa17.83■□□□□ 0.44
SIX4-201ENST00000216513 EIF3AQ14152 1382 aaKnown RBP17.83■□□□□ 0.44
SIX4-201ENST00000216513 AFAP1Q8N556 730 aa17.82■□□□□ 0.44
SIX4-201ENST00000216513 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.81■□□□□ 0.44
SIX4-201ENST00000216513 U2AF1L5P0DN76 240 aaPredicted RBP17.81■□□□□ 0.44
SIX4-201ENST00000216513 U2AF1Q01081 240 aaKnown RBP eCLIP17.81■□□□□ 0.44
SIX4-201ENST00000216513 IGF1RP08069 1367 aa17.8■□□□□ 0.44
SIX4-201ENST00000216513 RAPGEF3O95398 923 aa17.8■□□□□ 0.44
SIX4-201ENST00000216513 SF3B2Q13435 895 aaKnown RBP17.79■□□□□ 0.44
SIX4-201ENST00000216513 TXNDC2Q86VQ3 553 aa17.79■□□□□ 0.44
SIX4-201ENST00000216513 RUSC2Q8N2Y8 1516 aa17.78■□□□□ 0.44
SIX4-201ENST00000216513 ANP32BQ92688 251 aaKnown RBP17.78■□□□□ 0.44
SIX4-201ENST00000216513 CHMP3Q9Y3E7 222 aa17.78■□□□□ 0.44
SIX4-201ENST00000216513 RTN4Q9NQC3 1192 aaKnown RBP17.77■□□□□ 0.44
SIX4-201ENST00000216513 ARHGAP5Q13017 1502 aa17.76■□□□□ 0.43
SIX4-201ENST00000216513 USP35Q9P2H5 1018 aa17.75■□□□□ 0.43
SIX4-201ENST00000216513 NUTM2GQ5VZR2 741 aa17.74■□□□□ 0.43
SIX4-201ENST00000216513 RGS3P49796 1198 aa17.74■□□□□ 0.43
SIX4-201ENST00000216513 CCDC144AA2RUR9 1427 aa17.73■□□□□ 0.43
SIX4-201ENST00000216513 ZNF644Q9H582 1327 aaPredicted RBP17.73■□□□□ 0.43
SIX4-201ENST00000216513 TAF7LQ5H9L4 462 aa17.72■□□□□ 0.43
SIX4-201ENST00000216513 NAP1L2Q9ULW6 460 aaPredicted RBP17.72■□□□□ 0.43
SIX4-201ENST00000216513 AMER1Q5JTC6 1135 aaPredicted RBP17.72■□□□□ 0.43
SIX4-201ENST00000216513 PPP1R1BQ9UD71 204 aaPredicted RBP17.72■□□□□ 0.43
SIX4-201ENST00000216513 SYNJ2O15056 1496 aa17.72■□□□□ 0.43
SIX4-201ENST00000216513 HSPA5P11021 654 aaKnown RBP17.71■□□□□ 0.43
SIX4-201ENST00000216513 ESCO1Q5FWF5 840 aa17.71■□□□□ 0.42
SIX4-201ENST00000216513 C1orf141Q5JVX7 400 aa17.71■□□□□ 0.42
SIX4-201ENST00000216513 COG3Q96JB2 828 aa17.71■□□□□ 0.42
SIX4-201ENST00000216513 NCLP19338 710 aaKnown RBP17.7■□□□□ 0.42
SIX4-201ENST00000216513 CDK11BP21127 795 aaKnown RBP17.7■□□□□ 0.42
SIX4-201ENST00000216513 SPRYD3Q8NCJ5 442 aa17.7■□□□□ 0.42
SIX4-201ENST00000216513 THEMISQ8N1K5 641 aaPredicted RBP17.7■□□□□ 0.42
SIX4-201ENST00000216513 POGZQ7Z3K3 1410 aa17.7■□□□□ 0.42
SIX4-201ENST00000216513 B4GALNT3Q6L9W6 998 aa17.69■□□□□ 0.42
SIX4-201ENST00000216513 UACAQ9BZF9 1416 aa17.69■□□□□ 0.42
SIX4-201ENST00000216513 CASC1Q6TDU7 716 aa17.69■□□□□ 0.42
SIX4-201ENST00000216513 TOPBP1Q92547 1522 aa17.68■□□□□ 0.42
SIX4-201ENST00000216513 CFTRP13569 1480 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms