RNA–Protein interactions for RNA: ENSMUST00000213114.1

Ldlr-202, Transcript of Low-density lipoprotein receptor, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ldlr, Length 4,318 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ldlr-202ENSMUST00000213114 Cnga1P29974 684 aa12.41□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Nup155Q99P88 1391 aaKnown RBP12.41□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Lemd3Q9WU40 921 aa12.4□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Lamc3Q9R0B6 1581 aa12.4□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Sart1Q9Z315 806 aaKnown RBP12.38□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Duox2A2AQ99 1517 aa12.38□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Zfp644E9QA22 1323 aa12.38□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Fhad1A6PWD2 1420 aa12.38□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Smg6P61406 1418 aaKnown RBP12.38□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Grin2bQ01097 1482 aa12.37□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Trim30dE9PWL0 497 aa12.37□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Stag3O70576 1240 aa12.37□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Zscan21Q07231 555 aa12.37□□□□□ -0.43
Ldlr-202ENSMUST00000213114 MyclP10166 368 aa12.37□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Mroh2bQ7M6Y6 1581 aa12.36□□□□□ -0.43
Ldlr-202ENSMUST00000213114 CanxP35564 591 aaKnown RBP12.36□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Dhx57Q6P5D3 1388 aaKnown RBP12.35□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Arhgef5E9Q7D5 1581 aa12.35□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Kif3bQ61771 747 aa12.35□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Ccdc9Q8VC31 543 aaKnown RBP12.35□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Dbr1Q923B1 550 aa12.34□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Tdrd9Q14BI7 1383 aa12.34□□□□□ -0.43
Ldlr-202ENSMUST00000213114 PogzQ8BZH4 1409 aaKnown RBP12.34□□□□□ -0.43
Ldlr-202ENSMUST00000213114 NgefQ8CHT1 710 aa12.33□□□□□ -0.43
Ldlr-202ENSMUST00000213114 Map3k1P53349 1493 aa12.33□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Camsap1A2AHC3 1581 aa12.33□□□□□ -0.44
Ldlr-202ENSMUST00000213114 B4galnt3Q6L8S8 986 aa12.32□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Fam135aQ6NS59 1506 aa12.32□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Thoc2B1AZI6 1594 aaKnown RBP12.32□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Mak16Q8BGS0 296 aaKnown RBP12.31□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Supt16hQ920B9 1047 aa12.31□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Ankrd36D3Z4K0 1415 aa12.31□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Srcin1Q9QWI6 1250 aa12.31□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Hsp90aa1P07901 733 aaKnown RBP12.3□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Tmf1B9EKI3 1091 aa12.3□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Stk26Q99JT2 416 aa12.3□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Gtf2e1Q9D0D5 440 aa12.3□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Irx6Q9ER75 438 aa12.3□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Vps8Q0P5W1 1427 aa12.29□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Cc2d2bA0A286YDU8 1405 aa12.29□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Urb2E9Q7L1 1524 aaKnown RBP12.29□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Jph4Q80WT0 628 aa12.29□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Speer4f1Q9D5Q6 258 aa12.28□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Slc4a1apE9PX68 744 aa12.28□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Nolc1E9Q5C9 702 aaKnown RBP12.28□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Hsp90ab1P11499 724 aaKnown RBP12.28□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Tcerg1Q8CGF7 1100 aaKnown RBP12.28□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Rwdd1Q9CQK7 243 aa12.28□□□□□ -0.44
Ldlr-202ENSMUST00000213114 Rock2P70336 1388 aa12.27□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Znf710Q3U288 666 aa12.27□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Dcaf11Q91VU6 549 aa12.27□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Ecm2Q5FW85 670 aa12.26□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Tiam1Q60610 1591 aa12.26□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Dapk1Q80YE7 1442 aa12.26□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Armcx1Q9CX83 456 aa12.25□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Pank3Q8R2W9 370 aa12.25□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Mapk8ip3Q9ESN9 1337 aa12.24□□□□□ -0.45
Ldlr-202ENSMUST00000213114 CrbnQ8C7D2 445 aa12.24□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Cux1P53564 1515 aa12.24□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Soga1E1U8D0 1418 aa12.24□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Fan1Q69ZT1 1020 aa12.23□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Inpp5dQ9ES52 1191 aa12.23□□□□□ -0.45
Ldlr-202ENSMUST00000213114 AqrQ8CFQ3 1481 aaKnown RBP12.22□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Fgd1P52734 960 aa12.22□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Chmp5Q9D7S9 219 aa12.22□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Gm6268A2A3U9 297 aa12.22□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Gm7298A0A0N4SVU1 1476 aa12.22□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Polr1aO35134 1717 aaKnown RBP12.22□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Spag9Q58A65 1321 aaKnown RBP12.21□□□□□ -0.45
Ldlr-202ENSMUST00000213114 CadpsQ80TJ1 1355 aa12.21□□□□□ -0.45
Ldlr-202ENSMUST00000213114 Pabpn1Q8CCS6 302 aaKnown RBP12.2□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Plb1Q3TTY0 1478 aa12.2□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Ift140E9PY46 1464 aa12.2□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Ccdc27Q3V036 639 aa12.2□□□□□ -0.46
Ldlr-202ENSMUST00000213114 TnnQ80Z71 1560 aa12.19□□□□□ -0.46
Ldlr-202ENSMUST00000213114 EprsQ8CGC7 1512 aaKnown RBP12.19□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Golga2Q921M4 999 aa12.19□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Arid4bA2CG63 1314 aaKnown RBP12.18□□□□□ -0.46
Ldlr-202ENSMUST00000213114 U2af1Q9D883 239 aaKnown RBP12.18□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Arhgap31A6X8Z5 1425 aa12.18□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Crocc2F6XLV1 1638 aa12.18□□□□□ -0.46
Ldlr-202ENSMUST00000213114 1700019A02RikA0A087WPV9 146 aa12.18□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Slc4a2P13808 1237 aaKnown RBP12.18□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Txndc2Q6P902 515 aa12.17□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Mbd3Q9Z2D8 285 aaKnown RBP12.16□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Ttll5Q8CHB8 1328 aa12.16□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Esx1O88933 382 aa12.16□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Ppm1gQ61074 542 aa12.15□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Znf316Q6PGE4 1016 aa12.15□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Plin1Q8CGN5 517 aa12.15□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Rpgrip1lQ8CG73 1264 aa12.15□□□□□ -0.46
Ldlr-202ENSMUST00000213114 Dhx9O70133 1380 aaKnown RBP12.14□□□□□ -0.47
Ldlr-202ENSMUST00000213114 Ncoa2Q61026 1462 aa12.14□□□□□ -0.47
Ldlr-202ENSMUST00000213114 Vsig10D3YX43 558 aa12.14□□□□□ -0.47
Ldlr-202ENSMUST00000213114 Psme1P97371 249 aa12.13□□□□□ -0.47
Ldlr-202ENSMUST00000213114 Pcf11G3X9Z4 1553 aa12.13□□□□□ -0.47
Ldlr-202ENSMUST00000213114 DekQ7TNV0 380 aaKnown RBP12.13□□□□□ -0.47
Ldlr-202ENSMUST00000213114 Zscan10Q3URR7 782 aa12.13□□□□□ -0.47
Ldlr-202ENSMUST00000213114 Fam184bQ0KK56 942 aa12.12□□□□□ -0.47
Ldlr-202ENSMUST00000213114 Usp40Q8BWR4 1235 aa12.12□□□□□ -0.47
Retrieved 100 of 22,080 RNA–protein pairs in 100.4 ms