RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Stag3O70576 1240 aa20.38■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Grin2bQ01097 1482 aa20.36■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Arhgef5E9Q7D5 1581 aa20.35■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Cnga1P29974 684 aa20.35■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Duox2A2AQ99 1517 aa20.34■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Fhad1A6PWD2 1420 aa20.34■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Ccdc27Q3V036 639 aa20.33■□□□□ 0.84
Ccdc88b-201ENSMUST00000113440 Lemd3Q9WU40 921 aa20.33■□□□□ 0.84
Ccdc88b-201ENSMUST00000113440 Mroh2bQ7M6Y6 1581 aa20.32■□□□□ 0.84
Ccdc88b-201ENSMUST00000113440 Smg6P61406 1418 aaKnown RBP20.32■□□□□ 0.84
Ccdc88b-201ENSMUST00000113440 Sart1Q9Z315 806 aaKnown RBP20.31■□□□□ 0.84
Ccdc88b-201ENSMUST00000113440 Map3k1P53349 1493 aa20.31■□□□□ 0.84
Ccdc88b-201ENSMUST00000113440 Ppp1r18Q8BQ30 594 aa20.26■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Zfp644E9QA22 1323 aa20.26■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Ankrd36D3Z4K0 1415 aa20.26■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Trim30dE9PWL0 497 aa20.25■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 CanxP35564 591 aaKnown RBP20.25■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Kif3bQ61771 747 aa20.25■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 PogzQ8BZH4 1409 aaKnown RBP20.24■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Zscan21Q07231 555 aa20.23■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Vps8Q0P5W1 1427 aa20.23■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Cc2d2bA0A286YDU8 1405 aa20.23■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Polr1aO35134 1717 aaKnown RBP20.23■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Cux1P53564 1515 aa20.22■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Dbr1Q923B1 550 aa20.22■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Gtf2e1Q9D0D5 440 aa20.22■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Tiam1Q60610 1591 aa20.22■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Urb2E9Q7L1 1524 aaKnown RBP20.21■□□□□ 0.83
Ccdc88b-201ENSMUST00000113440 Tdrd9Q14BI7 1383 aa20.2■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Wdr62Q3U3T8 1523 aa20.2■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Jph4Q80WT0 628 aa20.2■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 B4galnt3Q6L8S8 986 aa20.19■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Tmf1B9EKI3 1091 aa20.19■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Mapk8ip3Q9ESN9 1337 aa20.18■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Camsap1A2AHC3 1581 aa20.18■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Supt16hQ920B9 1047 aa20.17■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Rock2P70336 1388 aa20.17■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Mak16Q8BGS0 296 aaKnown RBP20.16■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Fgd1P52734 960 aa20.16■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Stk26Q99JT2 416 aa20.15■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Nolc1E9Q5C9 702 aaKnown RBP20.15■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 NgefQ8CHT1 710 aa20.15■□□□□ 0.82
Ccdc88b-201ENSMUST00000113440 Hsp90ab1P11499 724 aaKnown RBP20.14■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Srcin1Q9QWI6 1250 aa20.13■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Ncoa2Q61026 1462 aa20.13■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Tcerg1Q8CGF7 1100 aaKnown RBP20.11■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Speer4f1Q9D5Q6 258 aa20.11■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Dapk1Q80YE7 1442 aa20.11■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Znf710Q3U288 666 aa20.11■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Rwdd1Q9CQK7 243 aa20.11■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Soga1E1U8D0 1418 aa20.1■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Gm7298A0A0N4SVU1 1476 aa20.1■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Irx6Q9ER75 438 aa20.1■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Slc4a1apE9PX68 744 aa20.09■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Armcx1Q9CX83 456 aa20.08■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Lamc3Q9R0B6 1581 aa20.08■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 Mrc2Q64449 1479 aa20.08■□□□□ 0.81
Ccdc88b-201ENSMUST00000113440 AqrQ8CFQ3 1481 aaKnown RBP20.08■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 Dcaf11Q91VU6 549 aa20.08■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 Spag9Q58A65 1321 aaKnown RBP20.07■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 MyclP10166 368 aa20.07■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 Pank3Q8R2W9 370 aa20.06■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 CrbnQ8C7D2 445 aa20.06■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 Ift140E9PY46 1464 aa20.05■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 Gm6268A2A3U9 297 aa20.05■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 Irx3P81067 507 aa20.05■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 Trim44Q9QXA7 346 aa20.04■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 Fan1Q69ZT1 1020 aa20.04■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 Pcf11G3X9Z4 1553 aa20.02■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 Ecm2Q5FW85 670 aa20.02■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 Inpp5dQ9ES52 1191 aa20.02■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 EprsQ8CGC7 1512 aaKnown RBP20.02■□□□□ 0.8
Ccdc88b-201ENSMUST00000113440 CadpsQ80TJ1 1355 aa20.01■□□□□ 0.79
Ccdc88b-201ENSMUST00000113440 Arhgap31A6X8Z5 1425 aa20.01■□□□□ 0.79
Ccdc88b-201ENSMUST00000113440 Htatsf1Q8BGC0 757 aa20.01■□□□□ 0.79
Ccdc88b-201ENSMUST00000113440 Ppm1gQ61074 542 aa19.99■□□□□ 0.79
Ccdc88b-201ENSMUST00000113440 DekQ7TNV0 380 aaKnown RBP19.98■□□□□ 0.79
Ccdc88b-201ENSMUST00000113440 Plb1Q3TTY0 1478 aa19.98■□□□□ 0.79
Ccdc88b-201ENSMUST00000113440 Chmp5Q9D7S9 219 aa19.97■□□□□ 0.79
Ccdc88b-201ENSMUST00000113440 Mbd3Q9Z2D8 285 aaKnown RBP19.97■□□□□ 0.79
Ccdc88b-201ENSMUST00000113440 Golga2Q921M4 999 aa19.96■□□□□ 0.79
Ccdc88b-201ENSMUST00000113440 Arid4bA2CG63 1314 aaKnown RBP19.96■□□□□ 0.79
Ccdc88b-201ENSMUST00000113440 1700019A02RikA0A087WPV9 146 aa19.95■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 U2af1Q9D883 239 aaKnown RBP19.95■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 NudcO35685 332 aaKnown RBP19.94■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 Slc4a2P13808 1237 aaKnown RBP19.94■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 Naip2Q9QUK4 1447 aa19.94■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 Ttll5Q8CHB8 1328 aa19.94■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 Iqcf3Q9D498 203 aa19.92■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 Dhx9O70133 1380 aaKnown RBP19.91■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 Pabpn1Q8CCS6 302 aaKnown RBP19.9■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 Psme1P97371 249 aa19.9■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 Rpgrip1lQ8CG73 1264 aa19.9■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 Txndc2Q6P902 515 aa19.9■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 Stard8Q8K031 1019 aa19.9■□□□□ 0.78
Ccdc88b-201ENSMUST00000113440 Vsig10D3YX43 558 aa19.89■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Ankrd26Q811D2 1581 aa19.89■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 A2mQ6GQT1 1474 aa19.88■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 SynmQ70IV5 1561 aa19.88■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Ythdc1E9Q5K9 736 aaKnown RBP19.88■□□□□ 0.77
Retrieved 100 of 22,080 RNA–protein pairs in 37.5 ms